Rh7AG303100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005943
Physical Location & Seq
Forward (+)
33429648 .. 33430228
581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG303100.1

Sequence Viewer

Length: 378 bp
ATGAGAGATCTCGACATTCCAAGCACGGCAGCGGCAGTTGTCAAATTGAAGCATTTCGATGTCCCTCTGACGTCGCCGGCGACCAATTCTCTGGTCAATTGCTCTGCCTCCAACGGGATCTACGTTACACCATCGGCCGGAGCTCTCTCTCATGCTCGTCTGAATCAAACTGAATTGAGTTCGATTATCGGCGAGAGGAGGAAAAAGAAGATGTTTAGGATACACAGGAATAGGCCGATGAGGTTAGGAGAGGTTAAACTGTATCAGAAGAAGCTACAACGTTTCATAGATTTGAGCAAAGGTATACATACTCTTCTGTATTTGTTGTCAAATTTCAGATTTCAAATTTTGTTCATAATTTCAAATGGCAGGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.15

Weight (kDa)

10.8

Isoelectric Point (pI)

22.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 304
AciI CCGC 1 cut(s) 32
AclI AACGTT 1 cut(s) 280
AclWI GGATC 1 cut(s) 125
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 2 cut(s) 331, 345
AcyI GRCGYC 1 cut(s) 71
AfiI CCNNNNNNNGG 2 cut(s) 114, 137
AgsI TTSAA 3 cut(s) 49, 344, 363
AluBI AGCT 2 cut(s) 143, 274
AluI AGCT 2 cut(s) 143, 274
Alw21I GWGCWC 1 cut(s) 145
AlwI GGATC 1 cut(s) 125
AoxI GGCC 2 cut(s) 135, 233
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 2 cut(s) 331, 345
Asp700I GAANNNNTTC 1 cut(s) 53
BanII GRGCYC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 41
BccI CCATC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 42
BciVI GTATCC 1 cut(s) 213
BfuI GTATCC 1 cut(s) 213
BglII AGATCT 1 cut(s) 7
BisI GCNGC 2 cut(s) 30, 33
BlsI GCNGC 2 cut(s) 31, 34
BsaHI GRCGYC 1 cut(s) 71
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 137
Bse118I RCCGGY 1 cut(s) 76
BseLI CCNNNNNNNGG 2 cut(s) 114, 137
BseRI GAGGAG 1 cut(s) 211
BseX3I CGGCCG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 41
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 137, 235
BsiEI CGRYCG 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 145
BsiSI CCGG 2 cut(s) 77, 138
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 2 cut(s) 114, 137
BsmFI GGGAC 1 cut(s) 47
BsnI GGCC 2 cut(s) 137, 235
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 2 cut(s) 7, 117
BspACI CCGC 1 cut(s) 32
BspANI GGCC 2 cut(s) 137, 235
BspPI GGATC 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
BssMI GATC 2 cut(s) 7, 117
BssNAI GTATAC 1 cut(s) 305
BssNI GRCGYC 1 cut(s) 71
Bst1107I GTATAC 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 261
Bst6I CTCTTC 1 cut(s) 318
BstACI GRCGYC 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 78
BstKTI GATC 2 cut(s) 10, 120
BstMBI GATC 2 cut(s) 7, 117
BstMCI CGRYCG 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 41
BstX2I RGATCY 2 cut(s) 7, 117
BstXI CCANNNNNNTGG 1 cut(s) 91
BstYI RGATCY 2 cut(s) 7, 117
BstZ17I GTATAC 1 cut(s) 305
BstZI CGGCCG 1 cut(s) 135
BsuI GTATCC 1 cut(s) 213
BsuRI GGCC 2 cut(s) 137, 235
Cac8I GCNNGC 1 cut(s) 78
Cfr10I RCCGGY 1 cut(s) 76
CviAII CATG 1 cut(s) 152
CviJI RGCY 4 cut(s) 137, 143, 235, 274
CviKI_1 RGCY 4 cut(s) 137, 143, 235, 274
DpnI GATC 2 cut(s) 9, 119
DpnII GATC 2 cut(s) 7, 117
EaeI YGGCCR 1 cut(s) 135
EagI CGGCCG 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
Ecl136II GAGCTC 1 cut(s) 143
EclXI CGGCCG 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 145
Eco52I CGGCCG 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 143
EcoT38I GRGCYC 1 cut(s) 145
FaeI CATG 1 cut(s) 155
FaiI YATR 6 cut(s) 153, 287, 305, 309, 356, 376
FaqI GGGAC 1 cut(s) 47
FatI CATG 1 cut(s) 151
FblI GTMKAC 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 30, 33
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 2 cut(s) 30, 33
GluI GCNGC 2 cut(s) 30, 33
HaeIII GGCC 2 cut(s) 137, 235
HapII CCGG 2 cut(s) 77, 138
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 1 cut(s) 155
HinfI GANTC 1 cut(s) 163
HpaII CCGG 2 cut(s) 77, 138
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 4 cut(s) 69, 162, 267, 338
Hpy188III TCNNGA 1 cut(s) 11
Hpy8I GTNNAC 1 cut(s) 305
Hpy99I CGWCG 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 261
HpyCH4IV ACGT 3 cut(s) 71, 123, 280
HpySE526I ACGT 3 cut(s) 71, 123, 280
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 1 cut(s) 155
KroI GCCGGC 1 cut(s) 76
KroNI GCCGGC 1 cut(s) 78
Kzo9I GATC 2 cut(s) 7, 117
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 5 cut(s) 77, 90, 151, 211, 355
Lsp1109I GCAGC 1 cut(s) 41
MaeII ACGT 3 cut(s) 71, 123, 280
MaeIII GTNAC 1 cut(s) 124
MalI GATC 2 cut(s) 9, 119
MboI GATC 2 cut(s) 7, 117
MboII GAAGA 3 cut(s) 220, 280, 305
MfeI CAATTG 1 cut(s) 97
MflI RGATCY 2 cut(s) 7, 117
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 7 cut(s) 44, 85, 97, 173, 331, 345, 357
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 6 cut(s) 75, 118, 189, 192, 234, 244
MreI CGCCGGCG 1 cut(s) 76
MroNI GCCGGC 1 cut(s) 76
MroXI GAANNNNTTC 1 cut(s) 53
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 57
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 2 cut(s) 77, 138
MunI CAATTG 1 cut(s) 97
NaeI GCCGGC 1 cut(s) 78
NdeII GATC 2 cut(s) 7, 117
NgoMIV GCCGGC 1 cut(s) 76
NlaIII CATG 1 cut(s) 155
PcsI WCGNNNNNNNCGW 2 cut(s) 77, 120
PdiI GCCGGC 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 1 cut(s) 163
PkrI GCNGC 2 cut(s) 31, 34
Psp124BI GAGCTC 1 cut(s) 145
Psp1406I AACGTT 1 cut(s) 280
PsuI RGATCY 2 cut(s) 7, 117
RseI CAYNNNNRTG 1 cut(s) 57
SacI GAGCTC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 2 cut(s) 30, 33
Sau3AI GATC 2 cut(s) 7, 117
SduI GDGCHC 1 cut(s) 145
SetI ASST 8 cut(s) 74, 126, 145, 245, 255, 276, 283, 304
SgrAI CRCCGGYG 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 57
Sse9I AATT 7 cut(s) 44, 85, 97, 173, 331, 345, 357
SsiI CCGC 1 cut(s) 32
SstI GAGCTC 1 cut(s) 145
TaaI ACNGT 1 cut(s) 261
TaiI ACGT 3 cut(s) 74, 126, 283
TaqI TCGA 3 cut(s) 12, 57, 182
TasI AATT 7 cut(s) 44, 85, 97, 173, 331, 345, 357
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 274, 343
XapI RAATTY 2 cut(s) 331, 345
XmiI GTMKAC 1 cut(s) 304
XmnI GAANNNNTTC 1 cut(s) 53
ZraI GACGTC 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.