Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000323.1

Orthogroup ID

OG0005943

Physical Location & Seq

Genomic Coordinates Reverse (-)

61929 .. 65330

Gene Structure 3402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000323.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atggcatcatacctgcatccctccatcgtcagatcatggatcagcaccgacacatcgaaaggactagcctcctcgttgccctttgaatcaattggccagcacttgccgccccatcacccccacaccactgtattcgaaacaacctcccataccagatcagatcagaacgatctaattgatgagaagagaagattacgagcaaggcctcgccgcagccctgcatactcgccaccggcgctggtcctcctcaccttcccagtcagcgacgactctcctcctccgccgcagtccacggctcgcccaggatctcaacctcgaccacctcctctctcccagtgctccgacctcgataagcacctctgcaatctccaaaaatcctcccaggtcctcgacatcatcaagtccgacgccgaccatgtcctctccaacgtctcctccacccgcgacctcgccgaccacgtcagctccaagatccgcaacctctccaatctccagaaatcctcccaggtcctcgacatcgtcaagtccaacgctgaccacgtcctctccaacgtctcctccacctgcgacctcgccaaccacgtcagtgccaagatccgcgacctcgccgaccacatctgcgccaaggtccgcgagcttgacctcgcccagtcgcgcatcaactccacgctcctccgtttggatgcgattgtggagcttgacctcgcccagtctcgtggttctgatttttttttgtcgagtcaccggattccggtgaccggtcgctggattccgatcatcagttaccggattcgagtcaccggtagccggagtcctgtcatcggtagccggagaccgcggccggccactggtcaccggagcacagcaaggtggaggatgacttctctctctaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

298

Amino Acids

33.0

Weight (kDa)

10.01

Isoelectric Point (pI)

63.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005943)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000004219 RLG00000005084 RLG00000010195 RLG00000013467 RLG00000014305 RLG00000028980 RLG00000030839 RLG00000032541
rosa_multiflora	Rmu_co8333173.1_g000001 Rmu_sc0001609.1_g000028 Rmu_sc0003426.1_g000014 Rmu_sc0010981.1_g000007 Rmu_sc0019815.1_g000001 Rmu_sc0023018.1_g000001 Rmu_ssc0000323.1_g000018
rosa_roxburghii	Rroxscaffold_1G00008410 Rroxscaffold_4G00294860 Rroxscaffold_5G00373940
rosa_samantha	Rh2BG307500 Rh2CG285600 Rh3CG238400 Rh4CG114700 Rh5DG479400 Rh5DG522500 Rh6CG228800 Rh6DG235200 Rh7AG303100 Rh7CG263200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	572
Acc36I	ACCTGC	2 cut(s)	21, 572
AccII	CGCG	5 cut(s)	444, 600, 633, 655, 838
AclWI	GGATC	4 cut(s)	47, 313, 466, 589
AcoI	YGGCCR	3 cut(s)	94, 839, 843
AcyI	GRCGYC	1 cut(s)	408
AfiI	CCNNNNNNNGG	7 cut(s)	679, 751, 758, 765, 807, 821, 848
AgeI	ACCGGT	2 cut(s)	758, 800
AgsI	TTSAA	1 cut(s)	86
AjiI	CACGTC	3 cut(s)	460, 541, 583
AjnI	CCWGG	3 cut(s)	301, 381, 504
AleI	CACNNNNGTG	1 cut(s)	585
AluBI	AGCT	3 cut(s)	465, 637, 697
AluI	AGCT	3 cut(s)	465, 637, 697
Alw21I	GWGCWC	2 cut(s)	341, 863
Alw26I	GTCTC	4 cut(s)	436, 559, 717, 826
AlwI	GGATC	4 cut(s)	47, 313, 466, 589
AoxI	GGCC	4 cut(s)	94, 203, 839, 843
ApeKI	GCWGC	1 cut(s)	213
AsiGI	ACCGGT	2 cut(s)	758, 800
AspLEI	GCGC	3 cut(s)	238, 623, 657
AspS9I	GGNCC	4 cut(s)	241, 385, 508, 628
AsuHPI	GGTGA	6 cut(s)	107, 241, 734, 766, 790, 845
AsuII	TTCGAA	1 cut(s)	135
AvaII	GGWCC	4 cut(s)	241, 385, 508, 628
BalI	TGGCCA	1 cut(s)	96
BauI	CACGAG	1 cut(s)	714
Bbv12I	GWGCWC	2 cut(s)	341, 863
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	2 cut(s)	32, 120
BceAI	ACGGC	1 cut(s)	309
BciT130I	CCWGG	3 cut(s)	303, 383, 506
BcoDI	GTCTC	4 cut(s)	436, 559, 717, 826
BfaI	CTAG	1 cut(s)	65
BfoI	RGCGCY	1 cut(s)	239
BfuAI	ACCTGC	2 cut(s)	21, 572
BisI	GCNGC	5 cut(s)	107, 211, 214, 284, 839
BlsI	GCNGC	5 cut(s)	108, 212, 215, 285, 840
Bme1390I	CCNGG	3 cut(s)	303, 383, 506
Bme18I	GGWCC	4 cut(s)	241, 385, 508, 628
BmgBI	CACGTC	3 cut(s)	460, 541, 583
BmgT120I	GGNCC	4 cut(s)	241, 385, 508, 628
BmrFI	CCNGG	3 cut(s)	303, 383, 506
BmrI	ACTGGG	4 cut(s)	251, 328, 643, 703
BmsI	GCATC	4 cut(s)	14, 25, 666, 673
BmuI	ACTGGG	4 cut(s)	251, 328, 643, 703
BpmI	CTGGAG	1 cut(s)	476
Bpu14I	TTCGAA	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	773
BsaHI	GRCGYC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	826
BsaJI	CCNNGG	6 cut(s)	291, 301, 381, 504, 624, 836
BsaWI	WCCGGW	6 cut(s)	744, 751, 758, 786, 800, 855
BsaXI	ACNNNNNCTCC	8 cut(s)	419, 449, 449, 479, 530, 542, 560, 572
Bsc4I	CCNNNNNNNGG	7 cut(s)	679, 751, 758, 765, 807, 821, 848
Bse118I	RCCGGY	4 cut(s)	232, 758, 800, 841
Bse1I	ACTGG	5 cut(s)	257, 334, 649, 709, 853
Bse8I	GATNNNNATC	1 cut(s)	773
BseBI	CCWGG	3 cut(s)	303, 383, 506
BseDI	CCNNGG	6 cut(s)	291, 301, 381, 504, 624, 836
BseGI	GGATG	3 cut(s)	16, 688, 882
BseJI	GATNNNNATC	1 cut(s)	773
BseLI	CCNNNNNNNGG	7 cut(s)	679, 751, 758, 765, 807, 821, 848
BseNI	ACTGG	5 cut(s)	257, 334, 649, 709, 853
BseRI	GAGGAG	8 cut(s)	61, 236, 264, 267, 315, 424, 547, 662
BseX3I	CGGCCG	1 cut(s)	839
BseXI	GCAGC	1 cut(s)	225
Bsh1236I	CGCG	5 cut(s)	444, 600, 633, 655, 838
Bsh1285I	CGRYCG	2 cut(s)	763, 842
BshFI	GGCC	4 cut(s)	96, 205, 841, 845
BshTI	ACCGGT	2 cut(s)	758, 800
BsiEI	CGRYCG	2 cut(s)	763, 842
BsiHKAI	GWGCWC	2 cut(s)	341, 863
BslI	CCNNNNNNNGG	7 cut(s)	679, 751, 758, 765, 807, 821, 848
BsmAI	GTCTC	4 cut(s)	436, 559, 717, 826
BsmBI	CGTCTC	2 cut(s)	436, 559
BsnI	GGCC	4 cut(s)	96, 205, 841, 845
Bso31I	GGTCTC	1 cut(s)	826
Bsp119I	TTCGAA	1 cut(s)	135
Bsp1286I	GDGCHC	2 cut(s)	341, 863
Bsp143I	GATC	9 cut(s)	32, 39, 155, 160, 169, 305, 471, 594, 774
BspANI	GGCC	4 cut(s)	96, 205, 841, 845
BspFNI	CGCG	5 cut(s)	444, 600, 633, 655, 838
BspMI	ACCTGC	2 cut(s)	21, 572
BspPI	GGATC	4 cut(s)	47, 313, 466, 589
BspT104I	TTCGAA	1 cut(s)	135
BspTNI	GGTCTC	1 cut(s)	826
BsrFI	RCCGGY	4 cut(s)	232, 758, 800, 841
BsrI	ACTGG	5 cut(s)	257, 334, 649, 709, 853
BssAI	RCCGGY	4 cut(s)	232, 758, 800, 841
BssECI	CCNNGG	6 cut(s)	291, 301, 381, 504, 624, 836
BssMI	GATC	9 cut(s)	32, 39, 155, 160, 169, 305, 471, 594, 774
BssNI	GRCGYC	1 cut(s)	408
BssSI	CACGAG	1 cut(s)	714
BssT1I	CCWWGG	1 cut(s)	624
Bst2BI	CACGAG	1 cut(s)	714
Bst2UI	CCWGG	3 cut(s)	303, 383, 506
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	408
BstBI	TTCGAA	1 cut(s)	135
BstC8I	GCNNGC	4 cut(s)	98, 298, 635, 843
BstDEI	CTNAG	1 cut(s)	891
BstDSI	CCRYGG	2 cut(s)	291, 836
BstEII	GGTNACC	2 cut(s)	754, 851
BstF5I	GGATG	3 cut(s)	16, 688, 882
BstFNI	CGCG	5 cut(s)	444, 600, 633, 655, 838
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	3 cut(s)	238, 623, 657
BstKTI	GATC	9 cut(s)	35, 42, 158, 163, 172, 308, 474, 597, 777
BstMAI	GTCTC	4 cut(s)	436, 559, 717, 826
BstMBI	GATC	9 cut(s)	32, 39, 155, 160, 169, 305, 471, 594, 774
BstMCI	CGRYCG	2 cut(s)	763, 842
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 235
BstNI	CCWGG	3 cut(s)	303, 383, 506
BstPI	GGTNACC	2 cut(s)	754, 851
BstSCI	CCNGG	3 cut(s)	301, 381, 504
BstUI	CGCG	5 cut(s)	444, 600, 633, 655, 838
BstV1I	GCAGC	1 cut(s)	225
BstX2I	RGATCY	3 cut(s)	305, 471, 594
BstXI	CCANNNNNNTGG	1 cut(s)	716
BstYI	RGATCY	3 cut(s)	305, 471, 594
BstZI	CGGCCG	1 cut(s)	839
BsuRI	GGCC	4 cut(s)	96, 205, 841, 845
BtgI	CCRYGG	2 cut(s)	291, 836
BtrI	CACGTC	3 cut(s)	460, 541, 583
BtsCI	GGATG	3 cut(s)	16, 688, 882
BtsIMutI	CAGTG	4 cut(s)	126, 341, 592, 846
BveI	ACCTGC	2 cut(s)	21, 572
Cac8I	GCNNGC	4 cut(s)	98, 298, 635, 843
CfoI	GCGC	3 cut(s)	238, 623, 657
Cfr10I	RCCGGY	4 cut(s)	232, 758, 800, 841
Cfr13I	GGNCC	4 cut(s)	241, 385, 508, 628
Cfr42I	CCGCGG	1 cut(s)	839
CseI	GACGC	1 cut(s)	416
CspAI	ACCGGT	2 cut(s)	758, 800
CviAII	CATG	2 cut(s)	36, 416
DdeI	CTNAG	1 cut(s)	891
DpnI	GATC	9 cut(s)	34, 41, 157, 162, 171, 307, 473, 596, 776
DpnII	GATC	9 cut(s)	32, 39, 155, 160, 169, 305, 471, 594, 774
EaeI	YGGCCR	3 cut(s)	94, 839, 843
EagI	CGGCCG	1 cut(s)	839
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
EciI	GGCGGA	1 cut(s)	270
EclXI	CGGCCG	1 cut(s)	839
Eco130I	CCWWGG	1 cut(s)	624
Eco147I	AGGCCT	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	826
Eco47I	GGWCC	4 cut(s)	241, 385, 508, 628
Eco52I	CGGCCG	1 cut(s)	839
Eco91I	GGTNACC	2 cut(s)	754, 851
EcoO109I	RGGNCCY	2 cut(s)	385, 508
EcoO65I	GGTNACC	2 cut(s)	754, 851
EcoRII	CCWGG	3 cut(s)	301, 381, 504
EcoT14I	CCWWGG	1 cut(s)	624
ErhI	CCWWGG	1 cut(s)	624
Esp3I	CGTCTC	2 cut(s)	436, 559
FaeI	CATG	2 cut(s)	39, 419
FaiI	YATR	5 cut(s)	10, 37, 150, 223, 417
FatI	CATG	2 cut(s)	35, 415
FauI	CCCGC	1 cut(s)	449
Fnu4HI	GCNGC	5 cut(s)	107, 211, 214, 284, 839
FokI	GGATG	3 cut(s)	3, 695, 889
FseI	GGCCGGCC	1 cut(s)	845
Fsp4HI	GCNGC	5 cut(s)	107, 211, 214, 284, 839
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	3 cut(s)	237, 622, 656
GluI	GCNGC	5 cut(s)	107, 211, 214, 284, 839
GsuI	CTGGAG	1 cut(s)	476
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	4 cut(s)	96, 205, 841, 845
HgaI	GACGC	1 cut(s)	416
HhaI	GCGC	3 cut(s)	238, 623, 657
Hin1I	GRCGYC	1 cut(s)	408
Hin1II	CATG	2 cut(s)	39, 419
Hin6I	GCGC	3 cut(s)	236, 621, 655
HinP1I	GCGC	3 cut(s)	236, 621, 655
HinfI	GANTC	8 cut(s)	86, 269, 739, 748, 769, 790, 795, 811
HphI	GGTGA	6 cut(s)	107, 241, 734, 766, 790, 845
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	7 cut(s)	32, 160, 165, 343, 406, 724, 774
Hpy188III	TCNNGA	1 cut(s)	493
Hpy8I	GTNNAC	1 cut(s)	291
Hpy99I	CGWCG	2 cut(s)	269, 410
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	5 cut(s)	429, 459, 540, 552, 582
HpyCH4V	TGCA	3 cut(s)	16, 221, 363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 235
HpyF3I	CTNAG	1 cut(s)	891
HpySE526I	ACGT	5 cut(s)	429, 459, 540, 552, 582
Hsp92I	GRCGYC	1 cut(s)	408
Hsp92II	CATG	2 cut(s)	39, 419
HspAI	GCGC	3 cut(s)	236, 621, 655
KroI	GCCGGC	1 cut(s)	841
KroNI	GCCGGC	1 cut(s)	843
KspI	CCGCGG	1 cut(s)	839
Kzo9I	GATC	9 cut(s)	32, 39, 155, 160, 169, 305, 471, 594, 774
LmnI	GCTCC	5 cut(s)	344, 470, 675, 694, 858
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	4 cut(s)	14, 25, 666, 673
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	5 cut(s)	429, 459, 540, 552, 582
MaeIII	GTNAC	5 cut(s)	740, 754, 782, 796, 851
MalI	GATC	9 cut(s)	34, 41, 157, 162, 171, 307, 473, 596, 776
MboI	GATC	9 cut(s)	32, 39, 155, 160, 169, 305, 471, 594, 774
MboII	GAAGA	2 cut(s)	196, 201
MfeI	CAATTG	1 cut(s)	90
MflI	RGATCY	3 cut(s)	305, 471, 594
MhlI	GDGCHC	2 cut(s)	341, 863
MlsI	TGGCCA	1 cut(s)	96
MluCI	AATT	2 cut(s)	90, 174
MluNI	TGGCCA	1 cut(s)	96
MlyI	GAGTC	4 cut(s)	263, 748, 804, 820
MmeI	TCCRAC	5 cut(s)	366, 429, 450, 552, 573
Mox20I	TGGCCA	1 cut(s)	96
MroNI	GCCGGC	1 cut(s)	841
MscI	TGGCCA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	585
Msp20I	TGGCCA	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	838
MspR9I	CCNGG	3 cut(s)	303, 383, 506
MunI	CAATTG	1 cut(s)	90
MvaI	CCWGG	3 cut(s)	303, 383, 506
MvnI	CGCG	5 cut(s)	444, 600, 633, 655, 838
MwoI	GCNNNNNNNGC	2 cut(s)	106, 235
NaeI	GCCGGC	1 cut(s)	843
NdeII	GATC	9 cut(s)	32, 39, 155, 160, 169, 305, 471, 594, 774
NgoMIV	GCCGGC	1 cut(s)	841
NlaIII	CATG	2 cut(s)	39, 419
NmuCI	GTSAC	4 cut(s)	740, 754, 796, 851
NspV	TTCGAA	1 cut(s)	135
OliI	CACNNNNGTG	1 cut(s)	585
PaqCI	CACCTGC	1 cut(s)	572
PceI	AGGCCT	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	3 cut(s)	456, 537, 579
PdiI	GCCGGC	1 cut(s)	843
PfeI	GAWTC	4 cut(s)	86, 748, 769, 790
PflFI	GACNNNGTC	4 cut(s)	416, 458, 518, 539
PinAI	ACCGGT	2 cut(s)	758, 800
PkrI	GCNGC	5 cut(s)	108, 212, 215, 285, 840
PleI	GAGTC	4 cut(s)	263, 747, 803, 819
PpsI	GAGTC	4 cut(s)	263, 747, 803, 819
PpuMI	RGGWCCY	2 cut(s)	385, 508
Psp5II	RGGWCCY	2 cut(s)	385, 508
Psp6I	CCWGG	3 cut(s)	301, 381, 504
PspEI	GGTNACC	2 cut(s)	754, 851
PspGI	CCWGG	3 cut(s)	301, 381, 504
PspPI	GGNCC	4 cut(s)	241, 385, 508, 628
PspPPI	RGGWCCY	2 cut(s)	385, 508
PsuI	RGATCY	3 cut(s)	305, 471, 594
PsyI	GACNNNGTC	4 cut(s)	416, 458, 518, 539
RigI	GGCCGGCC	1 cut(s)	845
RseI	CAYNNNNRTG	1 cut(s)	585
SacII	CCGCGG	1 cut(s)	839
SatI	GCNGC	5 cut(s)	107, 211, 214, 284, 839
Sau3AI	GATC	9 cut(s)	32, 39, 155, 160, 169, 305, 471, 594, 774
Sau96I	GGNCC	4 cut(s)	241, 385, 508, 628
SchI	GAGTC	4 cut(s)	263, 748, 804, 820
ScrFI	CCNGG	3 cut(s)	303, 383, 506
SduI	GDGCHC	2 cut(s)	341, 863
SfaNI	GCATC	4 cut(s)	14, 25, 666, 673
Sfr303I	CCGCGG	1 cut(s)	839
SfuI	TTCGAA	1 cut(s)	135
SgrAI	CRCCGGYG	1 cut(s)	232
SgrBI	CCGCGG	1 cut(s)	839
SinI	GGWCC	4 cut(s)	241, 385, 508, 628
SmiMI	CAYNNNNRTG	1 cut(s)	585
Sse9I	AATT	2 cut(s)	90, 174
SseBI	AGGCCT	1 cut(s)	205
SspMI	CTAG	1 cut(s)	65
StuI	AGGCCT	1 cut(s)	205
StyD4I	CCNGG	3 cut(s)	301, 381, 504
StyI	CCWWGG	1 cut(s)	624
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	5 cut(s)	432, 462, 543, 555, 585
TaqI	TCGA	8 cut(s)	56, 135, 316, 348, 390, 513, 737, 793
TasI	AATT	2 cut(s)	90, 174
TauI	GCSGC	4 cut(s)	109, 213, 286, 841
TfiI	GAWTC	4 cut(s)	86, 748, 769, 790
TscAI	CASTG	4 cut(s)	133, 341, 592, 853
TseFI	GTSAC	4 cut(s)	740, 754, 796, 851
TseI	GCWGC	1 cut(s)	213
Tsp45I	GTSAC	4 cut(s)	740, 754, 796, 851
TspGWI	ACGGA	1 cut(s)	665
TspRI	CASTG	4 cut(s)	133, 341, 592, 853
Tth111I	GACNNNGTC	4 cut(s)	416, 458, 518, 539
VpaK11BI	GGWCC	4 cut(s)	241, 385, 508, 628
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.