Rroxscaffold_1G00008410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005943
Physical Location & Seq
Forward (+)
10659330 .. 10660273
944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00008410.1

Sequence Viewer

Length: 327 bp
ATGTCCCTCGACGTCGCCGGCGACCAATTCTCCGATCAATTGCATCGCCTCCAACGAGATCTGCGTTACACCATTGGCCGAGCTCTCTCTCATGCTCGTCTCAATCAAACTGAATTGAGTTCAATTATCGGCGAGAGGAGGAAGAAGAAGATGTTTAGGATACATAGGAATAGGCCGATGAGGTTAGGAGAGGTCTTGAGAGAATGGGACAAGCTGTTTGTGTCCATTATGTATGTGGAAATTGGGAAGACGATTGCTAAGTCTAGCAAAGCAGCAGTGCAAAATGGGAATTGTCAATGGAATGAGGCACTTTCAGAGTCTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NT-C2

Protein Analysis

108

Amino Acids

12.54

Weight (kDa)

10.08

Isoelectric Point (pI)

34.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 76
AcyI GRCGYC 1 cut(s) 12
AgsI TTSAA 1 cut(s) 123
AluBI AGCT 2 cut(s) 83, 214
AluI AGCT 2 cut(s) 83, 214
Alw21I GWGCWC 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 104
AoxI GGCC 2 cut(s) 76, 173
ApeKI GCWGC 1 cut(s) 272
ArsI GACNNNNNNTTYG 2 cut(s) 200, 232
BanII GRGCYC 1 cut(s) 85
BbsI GAAGAC 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 85
BbvI GCAGC 1 cut(s) 284
BciVI GTATCC 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 1 cut(s) 264
BfuI GTATCC 1 cut(s) 153
BglII AGATCT 1 cut(s) 58
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
BmsI GCATC 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 217
BsaHI GRCGYC 1 cut(s) 12
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bse118I RCCGGY 1 cut(s) 17
BseRI GAGGAG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 284
BshFI GGCC 2 cut(s) 78, 175
BsiHKAI GWGCWC 1 cut(s) 85
BsiSI CCGG 1 cut(s) 18
BslFI GGGAC 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 104
BsmBI CGTCTC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 2 cut(s) 78, 175
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 2 cut(s) 34, 58
BspANI GGCC 2 cut(s) 78, 175
BsrFI RCCGGY 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 17
BssMI GATC 2 cut(s) 34, 58
BssNI GRCGYC 1 cut(s) 12
BstACI GRCGYC 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 258
BstKTI GATC 2 cut(s) 37, 61
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 2 cut(s) 34, 58
BstV1I GCAGC 1 cut(s) 284
BstV2I GAAGAC 1 cut(s) 254
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuI GTATCC 1 cut(s) 153
BsuRI GGCC 2 cut(s) 78, 175
BtgZI GCGATG 1 cut(s) 29
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 19
Cfr10I RCCGGY 1 cut(s) 17
CviAII CATG 1 cut(s) 92
CviJI RGCY 4 cut(s) 78, 83, 175, 214
CviKI_1 RGCY 4 cut(s) 78, 83, 175, 214
DdeI CTNAG 1 cut(s) 258
DpnI GATC 2 cut(s) 36, 60
DpnII GATC 2 cut(s) 34, 58
EaeI YGGCCR 1 cut(s) 76
Ecl136II GAGCTC 1 cut(s) 83
Eco24I GRGCYC 1 cut(s) 85
Eco53kI GAGCTC 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 83
EcoT38I GRGCYC 1 cut(s) 85
Esp3I CGTCTC 1 cut(s) 104
FaeI CATG 1 cut(s) 95
FaiI YATR 6 cut(s) 93, 165, 230, 234, 323, 325
FaqI GGGAC 1 cut(s) 221
FatI CATG 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 273
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 1 cut(s) 264
GluI GCNGC 1 cut(s) 273
HaeIII GGCC 2 cut(s) 78, 175
HapII CCGG 1 cut(s) 18
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 1 cut(s) 95
HinfI GANTC 1 cut(s) 317
HpaII CCGG 1 cut(s) 18
Hpy188I TCNGA 2 cut(s) 34, 316
Hpy188III TCNNGA 1 cut(s) 196
Hpy99I CGWCG 2 cut(s) 14, 17
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 2 cut(s) 43, 280
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 12
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 1 cut(s) 95
KroI GCCGGC 1 cut(s) 17
KroNI GCCGGC 1 cut(s) 19
Kzo9I GATC 2 cut(s) 34, 58
LpnPI CCDG 1 cut(s) 31
Lsp1109I GCAGC 1 cut(s) 284
LweI GCATC 1 cut(s) 52
MaeI CTAG 1 cut(s) 264
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 65
MalI GATC 2 cut(s) 36, 60
MboI GATC 2 cut(s) 34, 58
MboII GAAGA 4 cut(s) 154, 157, 160, 259
MfeI CAATTG 1 cut(s) 38
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 6 cut(s) 26, 38, 113, 123, 240, 289
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 7 cut(s) 17, 59, 129, 132, 174, 184, 298
MreI CGCCGGCG 1 cut(s) 17
MroNI GCCGGC 1 cut(s) 17
MspI CCGG 1 cut(s) 18
MunI CAATTG 1 cut(s) 38
NaeI GCCGGC 1 cut(s) 19
NdeII GATC 2 cut(s) 34, 58
NgoMIV GCCGGC 1 cut(s) 17
NlaIII CATG 1 cut(s) 95
NmeAIII GCCGAG 1 cut(s) 104
PcsI WCGNNNNNNNCGW 3 cut(s) 18, 52, 61
PdiI GCCGGC 1 cut(s) 19
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
Psp124BI GAGCTC 1 cut(s) 85
PsuI RGATCY 1 cut(s) 58
SacI GAGCTC 1 cut(s) 85
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 2 cut(s) 34, 58
SchI GAGTC 1 cut(s) 326
SduI GDGCHC 1 cut(s) 85
SetI ASST 5 cut(s) 15, 85, 185, 195, 216
SfaNI GCATC 1 cut(s) 52
SgrAI CRCCGGYG 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
Sse9I AATT 6 cut(s) 26, 38, 113, 123, 240, 289
SspMI CTAG 1 cut(s) 264
SstI GAGCTC 1 cut(s) 85
TaiI ACGT 1 cut(s) 15
TaqI TCGA 1 cut(s) 9
TasI AATT 6 cut(s) 26, 38, 113, 123, 240, 289
TscAI CASTG 1 cut(s) 282
TseI GCWGC 1 cut(s) 272
TspRI CASTG 1 cut(s) 282
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
XspI CTAG 1 cut(s) 264
ZraI GACGTC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.