Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005943

Physical Location & Seq

Genomic Coordinates Reverse (-)

16288748 .. 16292026

Gene Structure 3279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032541

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCTTCATCGACCACTGTCAGAGTCTCCTCCATTTTCTGCAGTGGCCAGATTGTCATCCTTATCGTCCAAGAGATCTGGTATGTGAGTGTGGGTCGTGGATCTGGCGCTGTGATCTCCGTCGGAGACAGCTTTTCCCAAGGTGTGGAGAAGGAGATGGAGGAGCGGGTTCAGAGACATTTTTCCAGTGAGATCGAACTGTTGGCATGGCTTCACAATCGAGATTGGCTGACCTTCGACAGCGACTTTGTTTCTATGATCGATGGTGATGGCGAGGTCGGCGACGACGTTGTGCCCTGGCAGGTTCCAGCCTTGATGTTTACCATGGTCGGGGCTGCAGCGGACGTCGGTAATGGTAATTGCCAAGTGCTGAGGCCAAATCTAAGCCCAATTGATAGGCTTGAAGTGGTGCAATCCCGAGACCTATGGAAGATTTGGGTGACCCAGGTATTAGTGATCTGCATCTCTGCTATGCCGGATTTTGGTGGTGTCTCCATCACCGGGAGAGTCTTCTCCAACCATATTCAAGGGCAAGGAGGAGAAGTTGGGGCTTGGGTCTATGGGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

20.65

Weight (kDa)

4.49

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005943)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000004219 RLG00000005084 RLG00000010195 RLG00000013467 RLG00000014305 RLG00000028980 RLG00000030839 RLG00000032541
rosa_multiflora	Rmu_co8333173.1_g000001 Rmu_sc0001609.1_g000028 Rmu_sc0003426.1_g000014 Rmu_sc0010981.1_g000007 Rmu_sc0019815.1_g000001 Rmu_sc0023018.1_g000001 Rmu_ssc0000323.1_g000018
rosa_roxburghii	Rroxscaffold_1G00008410 Rroxscaffold_4G00294860 Rroxscaffold_5G00373940
rosa_samantha	Rh2BG307500 Rh2CG285600 Rh3CG238400 Rh4CG114700 Rh5DG479400 Rh5DG522500 Rh6CG228800 Rh6DG235200 Rh7AG303100 Rh7CG263200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	348
Acc36I	ACCTGC	1 cut(s)	292
AccB7I	CCANNNNNTGG	1 cut(s)	145
AccBSI	CCGCTC	1 cut(s)	166
AciI	CCGC	2 cut(s)	166, 341
AclWI	GGATC	1 cut(s)	109
AcoI	YGGCCR	1 cut(s)	46
AcyI	GRCGYC	1 cut(s)	345
AfiI	CCNNNNNNNGG	4 cut(s)	145, 330, 482, 501
AgsI	TTSAA	2 cut(s)	404, 527
AjnI	CCWGG	2 cut(s)	296, 444
AluBI	AGCT	1 cut(s)	132
AluI	AGCT	1 cut(s)	132
Alw26I	GTCTC	5 cut(s)	31, 120, 169, 414, 496
AlwI	GGATC	1 cut(s)	109
Ama87I	CYCGRG	1 cut(s)	417
AoxI	GGCC	3 cut(s)	46, 374, 563
ApeKI	GCWGC	2 cut(s)	335, 338
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	563
AsuC2I	CCSGG	1 cut(s)	502
AsuHPI	GGTGA	3 cut(s)	278, 451, 490
AvaI	CYCGRG	1 cut(s)	417
BaeGI	GKGCMC	1 cut(s)	297
BalI	TGGCCA	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	502
BbvCI	CCTCAGC	1 cut(s)	371
BbvI	GCAGC	2 cut(s)	322, 350
BccI	CCATC	4 cut(s)	151, 257, 263, 503
BciT130I	CCWGG	2 cut(s)	298, 446
BcnI	CCSGG	1 cut(s)	502
BcoDI	GTCTC	5 cut(s)	31, 120, 169, 414, 496
BfmI	CTRYAG	2 cut(s)	40, 336
BfoI	RGCGCY	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	292
BglII	AGATCT	1 cut(s)	75
BisI	GCNGC	2 cut(s)	336, 339
BlsI	GCNGC	2 cut(s)	337, 340
Bme1390I	CCNGG	3 cut(s)	298, 446, 502
BmeT110I	CYCGRG	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	563
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	3 cut(s)	298, 446, 502
BmsI	GCATC	1 cut(s)	471
BoxI	GACNNNNGTC	1 cut(s)	17
BpiI	GAAGAC	1 cut(s)	502
Bpu10I	CCTNAGC	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	502
Bsa29I	ATCGAT	1 cut(s)	261
BsaBI	GATNNNNATC	2 cut(s)	56, 461
BsaHI	GRCGYC	1 cut(s)	345
BsaI	GGTCTC	1 cut(s)	414
BsaJI	CCNNGG	4 cut(s)	139, 296, 324, 444
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 330, 482, 501
Bse1I	ACTGG	1 cut(s)	186
Bse8I	GATNNNNATC	2 cut(s)	56, 461
BseBI	CCWGG	2 cut(s)	298, 446
BseCI	ATCGAT	1 cut(s)	261
BseDI	CCNNGG	4 cut(s)	139, 296, 324, 444
BseGI	GGATG	1 cut(s)	57
BseJI	GATNNNNATC	2 cut(s)	56, 461
BseLI	CCNNNNNNNGG	4 cut(s)	145, 330, 482, 501
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	3 cut(s)	19, 176, 552
BseSI	GKGCMC	1 cut(s)	297
BseXI	GCAGC	2 cut(s)	322, 350
BshFI	GGCC	3 cut(s)	48, 376, 565
BshVI	ATCGAT	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	417
BsiSI	CCGG	2 cut(s)	476, 501
BslI	CCNNNNNNNGG	4 cut(s)	145, 330, 482, 501
BsmAI	GTCTC	5 cut(s)	31, 120, 169, 414, 496
BsnI	GGCC	3 cut(s)	48, 376, 565
Bso31I	GGTCTC	1 cut(s)	414
BsoBI	CYCGRG	1 cut(s)	417
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	6 cut(s)	75, 101, 114, 192, 258, 456
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	2 cut(s)	166, 341
BspANI	GGCC	3 cut(s)	48, 376, 565
BspCNI	CTCAG	1 cut(s)	363
BspDI	ATCGAT	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	306
BspMAI	CTGCAG	2 cut(s)	44, 340
BspMI	ACCTGC	1 cut(s)	292
BspPI	GGATC	1 cut(s)	109
BspTNI	GGTCTC	1 cut(s)	414
BsrBI	CCGCTC	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	4 cut(s)	139, 296, 324, 444
BssMI	GATC	6 cut(s)	75, 101, 114, 192, 258, 456
BssNI	GRCGYC	1 cut(s)	345
BssT1I	CCWWGG	2 cut(s)	139, 324
Bst2UI	CCWGG	2 cut(s)	298, 446
Bst4CI	ACNGT	2 cut(s)	19, 201
BstACI	GRCGYC	1 cut(s)	345
BstDEI	CTNAG	3 cut(s)	371, 383, 567
BstDSI	CCRYGG	1 cut(s)	324
BstEII	GGTNACC	1 cut(s)	439
BstF5I	GGATG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	6 cut(s)	78, 104, 117, 195, 261, 459
BstMAI	GTCTC	5 cut(s)	31, 120, 169, 414, 496
BstMBI	GATC	6 cut(s)	75, 101, 114, 192, 258, 456
BstMWI	GCNNNNNNNGC	1 cut(s)	279
BstNI	CCWGG	2 cut(s)	298, 446
BstPAI	GACNNNNGTC	1 cut(s)	17
BstPI	GGTNACC	1 cut(s)	439
BstSCI	CCNGG	3 cut(s)	296, 444, 500
BstSFI	CTRYAG	2 cut(s)	40, 336
BstSLI	GKGCMC	1 cut(s)	297
BstV1I	GCAGC	2 cut(s)	322, 350
BstV2I	GAAGAC	1 cut(s)	502
BstX2I	RGATCY	2 cut(s)	75, 101
BstYI	RGATCY	2 cut(s)	75, 101
Bsu15I	ATCGAT	1 cut(s)	261
BsuRI	GGCC	3 cut(s)	48, 376, 565
BsuTUI	ATCGAT	1 cut(s)	261
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	57
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	3 cut(s)	15, 49, 193
BveI	ACCTGC	1 cut(s)	292
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	563
ClaI	ATCGAT	1 cut(s)	261
CviAII	CATG	2 cut(s)	207, 325
DdeI	CTNAG	3 cut(s)	371, 383, 567
DpnI	GATC	6 cut(s)	77, 103, 116, 194, 260, 458
DpnII	GATC	6 cut(s)	75, 101, 114, 192, 258, 456
EaeI	YGGCCR	1 cut(s)	46
Eco130I	CCWWGG	2 cut(s)	139, 324
Eco31I	GGTCTC	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	417
Eco91I	GGTNACC	1 cut(s)	439
EcoO65I	GGTNACC	1 cut(s)	439
EcoRII	CCWGG	2 cut(s)	296, 444
EcoT14I	CCWWGG	2 cut(s)	139, 324
ErhI	CCWWGG	2 cut(s)	139, 324
FaeI	CATG	2 cut(s)	210, 328
FaiI	YATR	8 cut(s)	84, 208, 257, 326, 427, 473, 522, 561
FatI	CATG	2 cut(s)	206, 324
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	336, 339
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	2 cut(s)	336, 339
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	2 cut(s)	336, 339
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	48, 376, 565
HapII	CCGG	2 cut(s)	476, 501
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	345
Hin1II	CATG	2 cut(s)	210, 328
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	2 cut(s)	24, 507
HpaII	CCGG	2 cut(s)	476, 501
HphI	GGTGA	3 cut(s)	278, 451, 490
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	3 cut(s)	23, 125, 174
Hpy188III	TCNNGA	2 cut(s)	221, 417
Hpy8I	GTNNAC	1 cut(s)	321
Hpy99I	CGWCG	4 cut(s)	125, 287, 290, 350
HpyAV	CCTTC	2 cut(s)	145, 244
HpyCH4III	ACNGT	2 cut(s)	19, 201
HpyCH4IV	ACGT	2 cut(s)	288, 345
HpyCH4V	TGCA	4 cut(s)	42, 338, 412, 462
HpyF10VI	GCNNNNNNNGC	1 cut(s)	279
HpyF3I	CTNAG	3 cut(s)	371, 383, 567
HpySE526I	ACGT	2 cut(s)	288, 345
Hsp92I	GRCGYC	1 cut(s)	345
Hsp92II	CATG	2 cut(s)	210, 328
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	6 cut(s)	75, 101, 114, 192, 258, 456
LmnI	GCTCC	1 cut(s)	163
Lsp1109I	GCAGC	2 cut(s)	322, 350
LweI	GCATC	1 cut(s)	471
MaeII	ACGT	2 cut(s)	288, 345
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	6 cut(s)	77, 103, 116, 194, 260, 458
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	6 cut(s)	75, 101, 114, 192, 258, 456
MboII	GAAGA	2 cut(s)	442, 502
MfeI	CAATTG	1 cut(s)	390
MflI	RGATCY	2 cut(s)	75, 101
MhlI	GDGCHC	1 cut(s)	297
MlsI	TGGCCA	1 cut(s)	48
MluCI	AATT	2 cut(s)	358, 390
MluNI	TGGCCA	1 cut(s)	48
MlyI	GAGTC	2 cut(s)	33, 516
MmeI	TCCRAC	2 cut(s)	103, 540
MnlI	CCTC	5 cut(s)	40, 154, 268, 366, 530
Mox20I	TGGCCA	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	48
Msp20I	TGGCCA	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	2 cut(s)	476, 501
MspR9I	CCNGG	3 cut(s)	298, 446, 502
MunI	CAATTG	1 cut(s)	390
MvaI	CCWGG	2 cut(s)	298, 446
MwoI	GCNNNNNNNGC	1 cut(s)	279
NciI	CCSGG	1 cut(s)	502
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	6 cut(s)	75, 101, 114, 192, 258, 456
NlaIII	CATG	2 cut(s)	210, 328
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PflMI	CCANNNNNTGG	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	337, 340
PleI	GAGTC	2 cut(s)	32, 515
PpsI	GAGTC	2 cut(s)	32, 515
PshAI	GACNNNNGTC	1 cut(s)	17
Psp6I	CCWGG	2 cut(s)	296, 444
PspEI	GGTNACC	1 cut(s)	439
PspGI	CCWGG	2 cut(s)	296, 444
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	563
PstI	CTGCAG	2 cut(s)	44, 340
PsuI	RGATCY	2 cut(s)	75, 101
SatI	GCNGC	2 cut(s)	336, 339
Sau3AI	GATC	6 cut(s)	75, 101, 114, 192, 258, 456
Sau96I	GGNCC	1 cut(s)	563
SchI	GAGTC	2 cut(s)	33, 516
ScrFI	CCNGG	3 cut(s)	298, 446, 502
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	9 cut(s)	134, 145, 236, 279, 291, 306, 348, 426, 450
SfaNI	GCATC	1 cut(s)	471
SfcI	CTRYAG	2 cut(s)	40, 336
Sse9I	AATT	2 cut(s)	358, 390
SsiI	CCGC	2 cut(s)	166, 341
StyD4I	CCNGG	3 cut(s)	296, 444, 500
StyI	CCWWGG	2 cut(s)	139, 324
TaaI	ACNGT	2 cut(s)	19, 201
TaiI	ACGT	2 cut(s)	291, 348
TaqI	TCGA	5 cut(s)	11, 195, 220, 237, 261
TasI	AATT	2 cut(s)	358, 390
TscAI	CASTG	3 cut(s)	22, 49, 193
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	2 cut(s)	335, 338
Tsp45I	GTSAC	1 cut(s)	439
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	3 cut(s)	22, 49, 193
Van91I	CCANNNNNTGG	1 cut(s)	145
ZraI	GACGTC	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.