Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010981.1

Orthogroup ID

OG0005943

Physical Location & Seq

Genomic Coordinates Reverse (-)

18899 .. 22632

Gene Structure 3734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010981.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atgtccaaaaggatttccagacgtgcttcacaagtagtcaagaccttctgccggaaggggtccaagtgggacgctcactctcttgatacttatgatctccttttcttcggggttcgatatgtggattggctgaccttcgatgacggctttgcttctatgatcgatggtgatggcgaggttccagccttgatgtttaccatggtcggggctgcagcggacgtcggtgatagtattagtgatctgcatctctactatgctggattttggtggtttctccgtcatcgggagagtagtctccgaccatattcaaggacaaggaggagaagttggggcttgagtcgttgggccttagttcaaatgtggtgggctattcaattacaggttcaaggcagtggactggtggcttgggattgtttttggcctactgcatttcgtgaccctttggaatccacggcttgccctggatctcaacctcgaccacctcctctctcccagcgctccgacctcgacaatcacctctgcaatctccagaaatcctctcaggtcctcaacattgtcaagtccgacgccgaccacgtcctctccaacgtctcatccacctgcgacctcgctgaccacgtcaacgctaagatccgcaacctctccaatctccagaaatcctcccaagtcctcgacatcgtcaagtccgacgccgaccacgtcctctccaacgtctcctccacctgcaacctcgccgaccacgtcagcagcaaggttctcgagctcgacctcgcccagtcccgtgtcaactccacactcctccgtttggatgcgattgtgaagcacgacctcacccaacgccggaatccaatcaccagtccagtagccgaattcctgttaccggtcgcaagagacagcagctggccactgatcaccggagcacagcaaggtggaggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

312

Amino Acids

34.9

Weight (kDa)

7.68

Isoelectric Point (pI)

51.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005943)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000004219 RLG00000005084 RLG00000010195 RLG00000013467 RLG00000014305 RLG00000028980 RLG00000030839 RLG00000032541
rosa_multiflora	Rmu_co8333173.1_g000001 Rmu_sc0001609.1_g000028 Rmu_sc0003426.1_g000014 Rmu_sc0010981.1_g000007 Rmu_sc0019815.1_g000001 Rmu_sc0023018.1_g000001 Rmu_ssc0000323.1_g000018
rosa_roxburghii	Rroxscaffold_1G00008410 Rroxscaffold_4G00294860 Rroxscaffold_5G00373940
rosa_samantha	Rh2BG307500 Rh2CG285600 Rh3CG238400 Rh4CG114700 Rh5DG479400 Rh5DG522500 Rh6CG228800 Rh6DG235200 Rh7AG303100 Rh7CG263200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	608, 731
AatII	GACGTC	1 cut(s)	222
Acc36I	ACCTGC	2 cut(s)	608, 731
AciI	CCGC	2 cut(s)	215, 634
AclWI	GGATC	2 cut(s)	472, 625
AcoI	YGGCCR	1 cut(s)	902
AcsI	RAATTY	1 cut(s)	869
AcyI	GRCGYC	3 cut(s)	219, 567, 690
AfeI	AGCGCT	1 cut(s)	497
AfiI	CCNNNNNNNGG	6 cut(s)	51, 204, 283, 805, 840, 880
AgeI	ACCGGT	1 cut(s)	880
AgsI	TTSAA	4 cut(s)	309, 356, 374, 386
AjiI	CACGTC	5 cut(s)	23, 577, 619, 700, 742
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	2 cut(s)	763, 900
AluI	AGCT	2 cut(s)	763, 900
Alw21I	GWGCWC	2 cut(s)	765, 922
Alw26I	GTCTC	4 cut(s)	299, 595, 718, 885
AlwI	GGATC	2 cut(s)	472, 625
AlwNI	CAGNNNCTG	1 cut(s)	900
Ama87I	CYCGRG	1 cut(s)	758
Aor51HI	AGCGCT	1 cut(s)	497
AoxI	GGCC	3 cut(s)	345, 419, 902
ApeKI	GCWGC	4 cut(s)	209, 212, 747, 897
ApoI	RAATTY	1 cut(s)	869
AsiGI	ACCGGT	1 cut(s)	880
AspLEI	GCGC	1 cut(s)	498
AspS9I	GGNCC	3 cut(s)	60, 345, 544
AsuHPI	GGTGA	6 cut(s)	179, 236, 506, 823, 844, 904
AvaI	CYCGRG	1 cut(s)	758
AvaII	GGWCC	2 cut(s)	60, 544
BalI	TGGCCA	1 cut(s)	904
BanII	GRGCYC	1 cut(s)	765
Bbv12I	GWGCWC	2 cut(s)	765, 922
BbvI	GCAGC	4 cut(s)	196, 224, 759, 909
BccI	CCATC	2 cut(s)	158, 164
BceAI	ACGGC	2 cut(s)	160, 468
BcgI	CGANNNNNNTGC	2 cut(s)	739, 773
BciT130I	CCWGG	1 cut(s)	462
BclI	TGATCA	1 cut(s)	909
BcoDI	GTCTC	4 cut(s)	299, 595, 718, 885
BfmI	CTRYAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	499
BfuAI	ACCTGC	2 cut(s)	608, 731
BisI	GCNGC	4 cut(s)	210, 213, 748, 898
BlsI	GCNGC	4 cut(s)	211, 214, 749, 899
Bme1390I	CCNGG	1 cut(s)	462
Bme18I	GGWCC	2 cut(s)	60, 544
BmeT110I	CYCGRG	1 cut(s)	758
BmgBI	CACGTC	5 cut(s)	23, 577, 619, 700, 742
BmgT120I	GGNCC	3 cut(s)	60, 345, 544
BmiI	GGNNCC	2 cut(s)	61, 180
BmrFI	CCNGG	1 cut(s)	462
BmrI	ACTGGG	1 cut(s)	769
BmsI	GCATC	2 cut(s)	253, 799
BmuI	ACTGGG	1 cut(s)	769
BpmI	CTGGAG	2 cut(s)	512, 635
BpuEI	CTTGAG	1 cut(s)	355
Bsa29I	ATCGAT	1 cut(s)	162
BsaBI	GATNNNNATC	1 cut(s)	243
BsaHI	GRCGYC	3 cut(s)	219, 567, 690
BsaJI	CCNNGG	3 cut(s)	198, 450, 460
BsaWI	WCCGGW	2 cut(s)	880, 914
BsaXI	ACNNNNNCTCC	8 cut(s)	310, 340, 566, 596, 689, 701, 719, 731
Bsc4I	CCNNNNNNNGG	6 cut(s)	51, 204, 283, 805, 840, 880
Bse118I	RCCGGY	1 cut(s)	880
Bse1I	ACTGG	4 cut(s)	402, 775, 855, 860
Bse8I	GATNNNNATC	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	462
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	3 cut(s)	198, 450, 460
BseGI	GGATG	2 cut(s)	593, 814
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	6 cut(s)	51, 204, 283, 805, 840, 880
BseMII	CTCAG	1 cut(s)	554
BseNI	ACTGG	4 cut(s)	402, 775, 855, 860
BseRI	GAGGAG	4 cut(s)	334, 474, 706, 788
BseXI	GCAGC	4 cut(s)	196, 224, 759, 909
BseYI	CCCAGC	1 cut(s)	492
Bsh1285I	CGRYCG	1 cut(s)	885
BshFI	GGCC	3 cut(s)	347, 421, 904
BshTI	ACCGGT	1 cut(s)	880
BshVI	ATCGAT	1 cut(s)	162
BsiEI	CGRYCG	1 cut(s)	885
BsiHKAI	GWGCWC	2 cut(s)	765, 922
BsiHKCI	CYCGRG	1 cut(s)	758
BsiSI	CCGG	4 cut(s)	52, 841, 881, 915
BslFI	GGGAC	2 cut(s)	83, 763
BslI	CCNNNNNNNGG	6 cut(s)	51, 204, 283, 805, 840, 880
BsmAI	GTCTC	4 cut(s)	299, 595, 718, 885
BsmBI	CGTCTC	2 cut(s)	595, 718
BsmFI	GGGAC	2 cut(s)	83, 763
BsnI	GGCC	3 cut(s)	347, 421, 904
BsoBI	CYCGRG	1 cut(s)	758
Bsp1286I	GDGCHC	2 cut(s)	765, 922
Bsp143I	GATC	6 cut(s)	94, 159, 238, 464, 630, 909
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	2 cut(s)	215, 634
BspANI	GGCC	3 cut(s)	347, 421, 904
BspCNI	CTCAG	1 cut(s)	553
BspDI	ATCGAT	1 cut(s)	162
BspLI	GGNNCC	2 cut(s)	61, 180
BspMAI	CTGCAG	1 cut(s)	214
BspMI	ACCTGC	2 cut(s)	608, 731
BspPI	GGATC	2 cut(s)	472, 625
BsrFI	RCCGGY	1 cut(s)	880
BsrI	ACTGG	4 cut(s)	402, 775, 855, 860
BssAI	RCCGGY	1 cut(s)	880
BssECI	CCNNGG	3 cut(s)	198, 450, 460
BssMI	GATC	6 cut(s)	94, 159, 238, 464, 630, 909
BssNI	GRCGYC	3 cut(s)	219, 567, 690
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	462
BstACI	GRCGYC	3 cut(s)	219, 567, 690
BstC8I	GCNNGC	2 cut(s)	457, 902
BstDEI	CTNAG	3 cut(s)	349, 540, 627
BstDSI	CCRYGG	2 cut(s)	198, 450
BstF5I	GGATG	2 cut(s)	593, 814
BstH2I	RGCGCY	1 cut(s)	499
BstHHI	GCGC	1 cut(s)	498
BstKTI	GATC	6 cut(s)	97, 162, 241, 467, 633, 912
BstMAI	GTCTC	4 cut(s)	299, 595, 718, 885
BstMBI	GATC	6 cut(s)	94, 159, 238, 464, 630, 909
BstMCI	CGRYCG	1 cut(s)	885
BstNI	CCWGG	1 cut(s)	462
BstSCI	CCNGG	1 cut(s)	460
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	4 cut(s)	196, 224, 759, 909
BstX2I	RGATCY	2 cut(s)	464, 630
BstYI	RGATCY	2 cut(s)	464, 630
Bsu15I	ATCGAT	1 cut(s)	162
BsuRI	GGCC	3 cut(s)	347, 421, 904
BsuTUI	ATCGAT	1 cut(s)	162
BtgI	CCRYGG	2 cut(s)	198, 450
BtrI	CACGTC	5 cut(s)	23, 577, 619, 700, 742
BtsCI	GGATG	2 cut(s)	593, 814
BtsI	GCAGTG	1 cut(s)	397
BtsIMutI	CAGTG	2 cut(s)	397, 905
BveI	ACCTGC	2 cut(s)	608, 731
Cac8I	GCNNGC	2 cut(s)	457, 902
CaiI	CAGNNNCTG	1 cut(s)	900
CfoI	GCGC	1 cut(s)	498
Cfr10I	RCCGGY	1 cut(s)	880
Cfr13I	GGNCC	3 cut(s)	60, 345, 544
ClaI	ATCGAT	1 cut(s)	162
CseI	GACGC	3 cut(s)	80, 575, 698
CspAI	ACCGGT	1 cut(s)	880
CspCI	CAANNNNNGTGG	2 cut(s)	344, 379
CviAII	CATG	1 cut(s)	199
DdeI	CTNAG	3 cut(s)	349, 540, 627
DpnI	GATC	6 cut(s)	96, 161, 240, 466, 632, 911
DpnII	GATC	6 cut(s)	94, 159, 238, 464, 630, 909
EaeI	YGGCCR	1 cut(s)	902
Ecl136II	GAGCTC	1 cut(s)	763
Eco130I	CCWWGG	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	765
Eco47I	GGWCC	2 cut(s)	60, 544
Eco47III	AGCGCT	1 cut(s)	497
Eco53kI	GAGCTC	1 cut(s)	763
Eco88I	CYCGRG	1 cut(s)	758
EcoICRI	GAGCTC	1 cut(s)	763
EcoO109I	RGGNCCY	1 cut(s)	544
EcoRI	GAATTC	1 cut(s)	869
EcoRII	CCWGG	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	765
ErhI	CCWWGG	1 cut(s)	198
Esp3I	CGTCTC	2 cut(s)	595, 718
FaeI	CATG	1 cut(s)	202
FaiI	YATR	6 cut(s)	93, 120, 158, 200, 255, 304
FaqI	GGGAC	2 cut(s)	83, 763
FatI	CATG	1 cut(s)	198
FbaI	TGATCA	1 cut(s)	909
Fnu4HI	GCNGC	4 cut(s)	210, 213, 748, 898
FokI	GGATG	2 cut(s)	580, 821
FriOI	GRGCYC	1 cut(s)	765
Fsp4HI	GCNGC	4 cut(s)	210, 213, 748, 898
GlaI	GCGC	1 cut(s)	497
GluI	GCNGC	4 cut(s)	210, 213, 748, 898
GsaI	CCCAGC	1 cut(s)	496
GsuI	CTGGAG	2 cut(s)	512, 635
HaeII	RGCGCY	1 cut(s)	499
HaeIII	GGCC	3 cut(s)	347, 421, 904
HapII	CCGG	4 cut(s)	52, 841, 881, 915
HgaI	GACGC	3 cut(s)	80, 575, 698
HhaI	GCGC	1 cut(s)	498
Hin1I	GRCGYC	3 cut(s)	219, 567, 690
Hin1II	CATG	1 cut(s)	202
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HincII	GTYRAC	2 cut(s)	622, 787
HindII	GTYRAC	2 cut(s)	622, 787
HinfI	GANTC	3 cut(s)	337, 446, 844
HpaII	CCGG	4 cut(s)	52, 841, 881, 915
HphI	GGTGA	6 cut(s)	179, 236, 506, 823, 844, 904
Hpy166II	GTNNAC	4 cut(s)	195, 395, 622, 787
Hpy188I	TCNGA	4 cut(s)	299, 502, 565, 688
Hpy188III	TCNNGA	8 cut(s)	18, 40, 83, 284, 434, 529, 652, 758
Hpy8I	GTNNAC	4 cut(s)	195, 395, 622, 787
Hpy99I	CGWCG	3 cut(s)	224, 569, 692
HpyAV	CCTTC	3 cut(s)	49, 55, 145
HpyCH4IV	ACGT	8 cut(s)	22, 219, 576, 588, 618, 699, 711, 741
HpyCH4V	TGCA	5 cut(s)	212, 244, 428, 522, 726
HpyF3I	CTNAG	3 cut(s)	349, 540, 627
HpySE526I	ACGT	8 cut(s)	22, 219, 576, 588, 618, 699, 711, 741
Hsp92I	GRCGYC	3 cut(s)	219, 567, 690
Hsp92II	CATG	1 cut(s)	202
HspAI	GCGC	1 cut(s)	496
Ksp22I	TGATCA	1 cut(s)	909
Kzo9I	GATC	6 cut(s)	94, 159, 238, 464, 630, 909
LmnI	GCTCC	2 cut(s)	503, 917
Lsp1109I	GCAGC	4 cut(s)	196, 224, 759, 909
LweI	GCATC	2 cut(s)	253, 799
MaeII	ACGT	8 cut(s)	22, 219, 576, 588, 618, 699, 711, 741
MaeIII	GTNAC	2 cut(s)	434, 876
MalI	GATC	6 cut(s)	96, 161, 240, 466, 632, 911
MboI	GATC	6 cut(s)	94, 159, 238, 464, 630, 909
MboII	GAAGA	1 cut(s)	97
MflI	RGATCY	2 cut(s)	464, 630
MhlI	GDGCHC	2 cut(s)	765, 922
MlsI	TGGCCA	1 cut(s)	904
MluCI	AATT	2 cut(s)	374, 869
MluNI	TGGCCA	1 cut(s)	904
MlyI	GAGTC	1 cut(s)	346
MmeI	TCCRAC	6 cut(s)	322, 525, 588, 609, 711, 732
Mox20I	TGGCCA	1 cut(s)	904
MscI	TGGCCA	1 cut(s)	904
Msp20I	TGGCCA	1 cut(s)	904
MspA1I	CMGCKG	2 cut(s)	215, 900
MspI	CCGG	4 cut(s)	52, 841, 881, 915
MspR9I	CCNGG	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	462
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	6 cut(s)	94, 159, 238, 464, 630, 909
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	2 cut(s)	61, 180
NmuCI	GTSAC	1 cut(s)	434
PaeR7I	CTCGAG	1 cut(s)	758
PaqCI	CACCTGC	2 cut(s)	608, 731
PcsI	WCGNNNNNNNCGW	5 cut(s)	573, 615, 684, 696, 738
PfeI	GAWTC	2 cut(s)	446, 844
PflFI	GACNNNGTC	5 cut(s)	575, 617, 677, 698, 740
PinAI	ACCGGT	1 cut(s)	880
PkrI	GCNGC	4 cut(s)	211, 214, 749, 899
PleI	GAGTC	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	345
PpuMI	RGGWCCY	1 cut(s)	544
Psp124BI	GAGCTC	1 cut(s)	765
Psp5II	RGGWCCY	1 cut(s)	544
Psp6I	CCWGG	1 cut(s)	460
PspFI	CCCAGC	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	2 cut(s)	61, 180
PspPI	GGNCC	3 cut(s)	60, 345, 544
PspPPI	RGGWCCY	1 cut(s)	544
PstI	CTGCAG	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	900
PsuI	RGATCY	2 cut(s)	464, 630
PsyI	GACNNNGTC	5 cut(s)	575, 617, 677, 698, 740
PvuII	CAGCTG	1 cut(s)	900
SacI	GAGCTC	1 cut(s)	765
SatI	GCNGC	4 cut(s)	210, 213, 748, 898
Sau3AI	GATC	6 cut(s)	94, 159, 238, 464, 630, 909
Sau96I	GGNCC	3 cut(s)	60, 345, 544
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	462
SduI	GDGCHC	2 cut(s)	765, 922
SfaNI	GCATC	2 cut(s)	253, 799
SfcI	CTRYAG	1 cut(s)	210
Sfr274I	CTCGAG	1 cut(s)	758
SinI	GGWCC	2 cut(s)	60, 544
SlaI	CTCGAG	1 cut(s)	758
SmlI	CTYRAG	2 cut(s)	334, 758
SmoI	CTYRAG	2 cut(s)	334, 758
Sse9I	AATT	2 cut(s)	374, 869
SsiI	CCGC	2 cut(s)	215, 634
SstI	GAGCTC	1 cut(s)	765
StyD4I	CCNGG	1 cut(s)	460
StyI	CCWWGG	1 cut(s)	198
TaiI	ACGT	8 cut(s)	25, 222, 579, 591, 621, 702, 714, 744
TaqI	TCGA	8 cut(s)	115, 138, 162, 475, 507, 672, 759, 765
TasI	AATT	2 cut(s)	374, 869
TfiI	GAWTC	2 cut(s)	446, 844
TscAI	CASTG	2 cut(s)	397, 912
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	4 cut(s)	209, 212, 747, 897
Tsp45I	GTSAC	1 cut(s)	434
TspGWI	ACGGA	2 cut(s)	266, 791
TspRI	CASTG	2 cut(s)	397, 912
Tth111I	GACNNNGTC	5 cut(s)	575, 617, 677, 698, 740
VpaK11BI	GGWCC	2 cut(s)	60, 544
XapI	RAATTY	1 cut(s)	869
XhoI	CTCGAG	1 cut(s)	758
ZraI	GACGTC	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.