RLG00000006341

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003271
Physical Location & Seq
Forward (+)
6366244 .. 6368755
2512 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006341

Sequence Viewer

Length: 978 bp
ATGAATCGCCGCGGCGGAGGAGGACTTGGGAGTGGAACCGCCGTCATCGTTGGCGGAGAAGTAGTCGACTTCGAATTCAACGCTGTGATCCGTGGAGAAGTGGACCGGCCAGTCGTCGAGGTCGACTCCGATCTGGACCGAGTCGTTGAGGTCGATTCCTTTGGTGACGACGCCGTGGTGGGCGGCCTGAGTCTGGAGGAGAGAGGTAGACTGCCTGGGTCGAGCACCGGAGCCGGAGACGGCCTGGGTCGAGCGTCGGAGCTGAGACGGCCTGGCTCGTGCACCGGAGCCAGAGGTCATAACCAGGATATTGTGTTTTTGATTCTGGACAAGCTCGAACCCATTGACCTTCTTCGCTTTGCTGCAGTTTGCAAGGAATGTCTGGCTCTTTCGAAAGAATACAACCTCACAGCTCAACGATGGAGTAATCAAGTGGTTCCCATGCTCTTGACCCTTAAGGAGGAAAAGCTAAGACTCTACAGTTGTTGCTGGTGCTATGACCTTCGTAAGGTTATCCTGTTAGTTGATCCATCTATGAATGGGGATAACAGTTATATGGTTGTAGCACTCACCACTTACAACTTGGCTCTCTTCAGAGCAGGCCAAAAAGATTGGACTTGCATCCGGAATTTAGAAGAGTGTAATGATGTTGTACTCTATAAAAGTCGAATCTATGGAGTTGGACGGAGGAGGTGTCTTTGGTCATTGAAAAGAACTAGTAATCTGCAAACGCCATATCCCTACGAGCCGTACAACTTCAAGATCTACAAGTTGGTGTTCGATGACGACGGATCTCTTTTTCCCGGATGTCAGCCAAACTCCATATATTACACAACTGAATTAGGAGAAACTCCAAAAACAATAGGTGTCTTCAATATACAAGATGGAACCATCACCCAACTAGACCCTCTAGACGGTTTGCACAAGTGCATGCGTCTAGCACTTTGGATTCTGCCGGAGTGTAATGGACTCTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

326

Amino Acids

36.16

Weight (kDa)

5.21

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 123 - 241 7.4e-09 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AccI GTMKAC 3 cut(s) 66, 123, 208
AccII CGCG 1 cut(s) 12
AccIII TCCGGA 1 cut(s) 624
AciI CCGC 6 cut(s) 10, 12, 15, 39, 54, 183
AclWI GGATC 3 cut(s) 82, 521, 799
AcoI YGGCCR 1 cut(s) 107
AcsI RAATTY 2 cut(s) 74, 628
AcuI CTGAAG 1 cut(s) 577
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 2 cut(s) 654, 752
AfiI CCNNNNNNNGG 4 cut(s) 193, 460, 508, 914
AflII CTTAAG 1 cut(s) 455
AgsI TTSAA 4 cut(s) 79, 709, 760, 874
AhlI ACTAGT 1 cut(s) 716
AjnI CCWGG 4 cut(s) 214, 243, 271, 303
AluBI AGCT 4 cut(s) 262, 334, 413, 469
AluI AGCT 4 cut(s) 262, 334, 413, 469
Alw21I GWGCWC 2 cut(s) 227, 284
Alw26I GTCTC 2 cut(s) 231, 259
Alw44I GTGCAC 1 cut(s) 280
AlwI GGATC 3 cut(s) 82, 521, 799
Aor13HI TCCGGA 1 cut(s) 624
AoxI GGCC 5 cut(s) 107, 184, 241, 269, 601
ApaLI GTGCAC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 2 cut(s) 74, 628
AspS9I GGNCC 2 cut(s) 103, 136
AsuC2I CCSGG 1 cut(s) 804
AsuHPI GGTGA 3 cut(s) 176, 562, 886
AsuII TTCGAA 2 cut(s) 72, 392
AvaII GGWCC 2 cut(s) 103, 136
BaeGI GKGCMC 1 cut(s) 284
BauI CACGAG 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 862
Bbv12I GWGCWC 2 cut(s) 227, 284
BbvI GCAGC 1 cut(s) 349
BccI CCATC 4 cut(s) 414, 538, 878, 899
BceAI ACGGC 5 cut(s) 26, 158, 256, 284, 733
BciT130I CCWGG 4 cut(s) 216, 245, 273, 305
BcnI CCSGG 1 cut(s) 804
BcoDI GTCTC 2 cut(s) 231, 259
BcuI ACTAGT 1 cut(s) 716
BfaI CTAG 5 cut(s) 717, 902, 911, 938, 976
BfmI CTRYAG 2 cut(s) 363, 478
BfrI CTTAAG 1 cut(s) 455
BglII AGATCT 1 cut(s) 762
BisI GCNGC 4 cut(s) 10, 13, 184, 363
BlsI GCNGC 4 cut(s) 11, 14, 185, 364
Bme1390I CCNGG 5 cut(s) 216, 245, 273, 305, 804
Bme18I GGWCC 2 cut(s) 103, 136
BmgT120I GGNCC 2 cut(s) 103, 136
BmiI GGNNCC 5 cut(s) 37, 232, 289, 438, 889
BmrFI CCNGG 5 cut(s) 216, 245, 273, 305, 804
BmsI GCATC 1 cut(s) 630
BpiI GAAGAC 1 cut(s) 862
BplI GAGNNNNNCTC 2 cut(s) 110, 142
BpmI CTGGAG 1 cut(s) 215
Bpu14I TTCGAA 2 cut(s) 72, 392
BpuMI CCSGG 1 cut(s) 804
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 5 cut(s) 10, 91, 174, 215, 244
BsaWI WCCGGW 3 cut(s) 227, 284, 624
BsaXI ACNNNNNCTCC 4 cut(s) 48, 78, 679, 709
Bsc4I CCNNNNNNNGG 4 cut(s) 193, 460, 508, 914
Bse118I RCCGGY 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 110
BseAI TCCGGA 1 cut(s) 624
BseBI CCWGG 4 cut(s) 216, 245, 273, 305
BseDI CCNNGG 5 cut(s) 10, 91, 174, 215, 244
BseGI GGATG 2 cut(s) 621, 812
BseLI CCNNNNNNNGG 4 cut(s) 193, 460, 508, 914
BseMII CTCAG 2 cut(s) 179, 254
BseNI ACTGG 1 cut(s) 110
BseRI GAGGAG 3 cut(s) 33, 212, 703
BseSI GKGCMC 1 cut(s) 284
BseXI GCAGC 1 cut(s) 349
Bsh1236I CGCG 1 cut(s) 12
BshFI GGCC 5 cut(s) 109, 186, 243, 271, 603
BsiHKAI GWGCWC 2 cut(s) 227, 284
BsiSI CCGG 7 cut(s) 106, 228, 234, 285, 625, 804, 956
BslI CCNNNNNNNGG 4 cut(s) 193, 460, 508, 914
BsmAI GTCTC 2 cut(s) 231, 259
BsmBI CGTCTC 2 cut(s) 231, 259
BsnI GGCC 5 cut(s) 109, 186, 243, 271, 603
Bsp119I TTCGAA 2 cut(s) 72, 392
Bsp1286I GDGCHC 2 cut(s) 227, 284
Bsp13I TCCGGA 1 cut(s) 624
Bsp143I GATC 5 cut(s) 87, 130, 526, 762, 791
BspACI CCGC 6 cut(s) 10, 12, 15, 39, 54, 183
BspANI GGCC 5 cut(s) 109, 186, 243, 271, 603
BspCNI CTCAG 2 cut(s) 180, 255
BspEI TCCGGA 1 cut(s) 624
BspFNI CGCG 1 cut(s) 12
BspLI GGNNCC 5 cut(s) 37, 232, 289, 438, 889
BspMAI CTGCAG 1 cut(s) 367
BspPI GGATC 3 cut(s) 82, 521, 799
BspT104I TTCGAA 2 cut(s) 72, 392
BspTI CTTAAG 1 cut(s) 455
BsrFI RCCGGY 1 cut(s) 105
BsrI ACTGG 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 105
BssECI CCNNGG 5 cut(s) 10, 91, 174, 215, 244
BssMI GATC 5 cut(s) 87, 130, 526, 762, 791
BssNI GRCGYC 1 cut(s) 171
BssSI CACGAG 1 cut(s) 277
Bst2BI CACGAG 1 cut(s) 277
Bst2UI CCWGG 4 cut(s) 216, 245, 273, 305
Bst4CI ACNGT 3 cut(s) 482, 551, 917
Bst6I CTCTTC 2 cut(s) 596, 630
BstACI GRCGYC 1 cut(s) 171
BstAFI CTTAAG 1 cut(s) 455
BstBI TTCGAA 2 cut(s) 72, 392
BstC8I GCNNGC 2 cut(s) 601, 932
BstDEI CTNAG 3 cut(s) 188, 263, 470
BstDSI CCRYGG 3 cut(s) 10, 91, 174
BstENI CCTNNNNNAGG 2 cut(s) 458, 506
BstF5I GGATG 2 cut(s) 621, 812
BstFNI CGCG 1 cut(s) 12
BstKTI GATC 5 cut(s) 90, 133, 529, 765, 794
BstMAI GTCTC 2 cut(s) 231, 259
BstMBI GATC 5 cut(s) 87, 130, 526, 762, 791
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstNI CCWGG 4 cut(s) 216, 245, 273, 305
BstNSI RCATGY 1 cut(s) 934
BstSCI CCNGG 5 cut(s) 214, 243, 271, 303, 802
BstSFI CTRYAG 2 cut(s) 363, 478
BstSLI GKGCMC 1 cut(s) 284
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 349
BstV2I GAAGAC 1 cut(s) 862
BstX2I RGATCY 2 cut(s) 762, 791
BstYI RGATCY 2 cut(s) 762, 791
BsuRI GGCC 5 cut(s) 109, 186, 243, 271, 603
BtgI CCRYGG 3 cut(s) 10, 91, 174
BtsCI GGATG 2 cut(s) 621, 812
Cac8I GCNNGC 2 cut(s) 601, 932
Cfr10I RCCGGY 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 103, 136
Cfr42I CCGCGG 1 cut(s) 13
CseI GACGC 3 cut(s) 179, 243, 923
Csp6I GTAC 2 cut(s) 653, 751
CviAII CATG 2 cut(s) 442, 931
CviQI GTAC 2 cut(s) 653, 751
DdeI CTNAG 3 cut(s) 188, 263, 470
DpnI GATC 5 cut(s) 89, 132, 528, 764, 793
DpnII GATC 5 cut(s) 87, 130, 526, 762, 791
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 107
Eam1104I CTCTTC 2 cut(s) 596, 630
EarI CTCTTC 2 cut(s) 596, 630
EciI GGCGGA 2 cut(s) 30, 69
Eco47I GGWCC 2 cut(s) 103, 136
Eco57I CTGAAG 1 cut(s) 577
EcoNI CCTNNNNNAGG 2 cut(s) 458, 506
EcoRI GAATTC 1 cut(s) 74
EcoRII CCWGG 4 cut(s) 214, 243, 271, 303
Esp3I CGTCTC 2 cut(s) 231, 259
FaeI CATG 2 cut(s) 445, 934
FatI CATG 2 cut(s) 441, 930
FblI GTMKAC 3 cut(s) 66, 123, 208
Fnu4HI GCNGC 4 cut(s) 10, 13, 184, 363
FokI GGATG 2 cut(s) 608, 819
Fsp4HI GCNGC 4 cut(s) 10, 13, 184, 363
FspBI CTAG 5 cut(s) 717, 902, 911, 938, 976
GluI GCNGC 4 cut(s) 10, 13, 184, 363
GsuI CTGGAG 1 cut(s) 215
HaeIII GGCC 5 cut(s) 109, 186, 243, 271, 603
HapII CCGG 7 cut(s) 106, 228, 234, 285, 625, 804, 956
HgaI GACGC 3 cut(s) 179, 243, 923
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 2 cut(s) 445, 934
HincII GTYRAC 2 cut(s) 67, 124
HindII GTYRAC 2 cut(s) 67, 124
HpaII CCGG 7 cut(s) 106, 228, 234, 285, 625, 804, 956
HphI GGTGA 3 cut(s) 176, 562, 886
Hpy166II GTNNAC 5 cut(s) 67, 103, 124, 209, 282
Hpy188I TCNGA 3 cut(s) 130, 259, 596
Hpy188III TCNNGA 7 cut(s) 134, 194, 326, 448, 625, 760, 911
Hpy8I GTNNAC 5 cut(s) 67, 103, 124, 209, 282
Hpy99I CGWCG 4 cut(s) 119, 173, 259, 791
HpyAV CCTTC 2 cut(s) 359, 512
HpyCH4III ACNGT 3 cut(s) 482, 551, 917
HpyCH4V TGCA 7 cut(s) 282, 365, 372, 621, 727, 922, 930
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
HpyF3I CTNAG 3 cut(s) 188, 263, 470
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 2 cut(s) 445, 934
Kpn2I TCCGGA 1 cut(s) 624
KspI CCGCGG 1 cut(s) 13
Kzo9I GATC 5 cut(s) 87, 130, 526, 762, 791
LmnI GCTCC 3 cut(s) 230, 259, 287
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 1 cut(s) 630
MaeI CTAG 5 cut(s) 717, 902, 911, 938, 976
MaeIII GTNAC 1 cut(s) 164
MalI GATC 5 cut(s) 89, 132, 528, 764, 793
MboI GATC 5 cut(s) 87, 130, 526, 762, 791
MboII GAAGA 4 cut(s) 344, 583, 647, 862
MflI RGATCY 2 cut(s) 762, 791
MhlI GDGCHC 2 cut(s) 227, 284
MluCI AATT 3 cut(s) 74, 628, 839
MlyI GAGTC 5 cut(s) 119, 150, 199, 468, 963
MmeI TCCRAC 2 cut(s) 237, 661
MroI TCCGGA 1 cut(s) 624
MseI TTAA 1 cut(s) 456
MspA1I CMGCKG 1 cut(s) 12
MspCI CTTAAG 1 cut(s) 455
MspI CCGG 7 cut(s) 106, 228, 234, 285, 625, 804, 956
MspR9I CCNGG 5 cut(s) 216, 245, 273, 305, 804
MvaI CCWGG 4 cut(s) 216, 245, 273, 305
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 268
NciI CCSGG 1 cut(s) 804
NdeII GATC 5 cut(s) 87, 130, 526, 762, 791
NlaIII CATG 2 cut(s) 445, 934
NlaIV GGNNCC 5 cut(s) 37, 232, 289, 438, 889
NmuCI GTSAC 1 cut(s) 164
NspI RCATGY 1 cut(s) 934
NspV TTCGAA 2 cut(s) 72, 392
PaeI GCATGC 1 cut(s) 934
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 150
PfeI GAWTC 5 cut(s) 4, 155, 322, 669, 949
PflFI GACNNNGTC 1 cut(s) 140
PfoI TCCNGGA 1 cut(s) 802
PkrI GCNGC 4 cut(s) 11, 14, 185, 364
PleI GAGTC 5 cut(s) 119, 149, 198, 468, 963
PpsI GAGTC 5 cut(s) 119, 149, 198, 468, 963
Psp6I CCWGG 4 cut(s) 214, 243, 271, 303
PspGI CCWGG 4 cut(s) 214, 243, 271, 303
PspN4I GGNNCC 5 cut(s) 37, 232, 289, 438, 889
PspPI GGNCC 2 cut(s) 103, 136
PstI CTGCAG 1 cut(s) 367
PsuI RGATCY 2 cut(s) 762, 791
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 2 cut(s) 654, 752
RsaNI GTAC 2 cut(s) 653, 751
SacII CCGCGG 1 cut(s) 13
SalI GTCGAC 2 cut(s) 65, 122
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 4 cut(s) 10, 13, 184, 363
Sau3AI GATC 5 cut(s) 87, 130, 526, 762, 791
Sau96I GGNCC 2 cut(s) 103, 136
SchI GAGTC 5 cut(s) 119, 150, 199, 468, 963
ScrFI CCNGG 5 cut(s) 216, 245, 273, 305, 804
SduI GDGCHC 2 cut(s) 227, 284
SfaNI GCATC 1 cut(s) 630
SfcI CTRYAG 2 cut(s) 363, 478
Sfr303I CCGCGG 1 cut(s) 13
SfuI TTCGAA 2 cut(s) 72, 392
SgrBI CCGCGG 1 cut(s) 13
SinI GGWCC 2 cut(s) 103, 136
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
SpeI ACTAGT 1 cut(s) 716
SphI GCATGC 1 cut(s) 934
Sse9I AATT 3 cut(s) 74, 628, 839
SsiI CCGC 6 cut(s) 10, 12, 15, 39, 54, 183
SspMI CTAG 5 cut(s) 717, 902, 911, 938, 976
StyD4I CCNGG 5 cut(s) 214, 243, 271, 303, 802
TaaI ACNGT 3 cut(s) 482, 551, 917
TaqII GACCGA 1 cut(s) 153
TasI AATT 3 cut(s) 74, 628, 839
TatI WGTACW 1 cut(s) 652
TauI GCSGC 3 cut(s) 12, 15, 186
TfiI GAWTC 5 cut(s) 4, 155, 322, 669, 949
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 2 cut(s) 17, 551
TspGWI ACGGA 3 cut(s) 80, 700, 804
Tth111I GACNNNGTC 1 cut(s) 140
Vha464I CTTAAG 1 cut(s) 455
VneI GTGCAC 1 cut(s) 280
VpaK11BI GGWCC 2 cut(s) 103, 136
XagI CCTNNNNNAGG 2 cut(s) 458, 506
XapI RAATTY 2 cut(s) 74, 628
XbaI TCTAGA 1 cut(s) 910
XceI RCATGY 1 cut(s) 934
XcmI CCANNNNNNNNNTGG 1 cut(s) 580
XmiI GTMKAC 3 cut(s) 66, 123, 208
XspI CTAG 5 cut(s) 717, 902, 911, 938, 976
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.