Rh6CG146900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003271
Physical Location & Seq
Forward (+)
19164552 .. 19164884
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG146900.1

Sequence Viewer

Length: 333 bp
ATGCACTCCCTCAAGTACCCGGCGGCGATCATCTGCTCTTTGATGTTGAGGAGGTCAATCACCGCATCGGAGTGGATGAGATCGAGCTCCTATAGCTCGAGGTGTTCGATAAATCGCCGCGGCGGAGGAGGACTTGGGAGTGGAACCGCTGTCATCGTTGACGGAGAAGTCGTCGACTTCGAATTTGGTGTTGTGATCGGCGGAAAAGTGGTGGCTGGAGGAGGCGAAGGAGCCTGGTCAACATCCTCAATCTTCGATTCACTTCCTTCAGGTTCAGCATTCTTCCGATGTAGATTAGGACCAGCCAGTCGTCGAGGTCGACTCCGATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.56

Weight (kDa)

10.39

Isoelectric Point (pI)

65.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 167, 306
AccI GTMKAC 2 cut(s) 174, 319
AccII CGCG 1 cut(s) 120
AciI CCGC 7 cut(s) 23, 63, 118, 120, 123, 147, 201
AcsI RAATTY 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 1 cut(s) 17
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 2 cut(s) 87, 96
AluI AGCT 2 cut(s) 87, 96
Alw21I GWGCWC 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 97
ApoI RAATTY 1 cut(s) 182
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
AspS9I GGNCC 1 cut(s) 299
AsuC2I CCSGG 1 cut(s) 20
AsuHPI GGTGA 1 cut(s) 52
AsuII TTCGAA 1 cut(s) 180
AvaI CYCGRG 1 cut(s) 97
AvaII GGWCC 1 cut(s) 299
BanII GRGCYC 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 235
BcnI CCSGG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 91
BisI GCNGC 3 cut(s) 24, 118, 121
BlsI GCNGC 3 cut(s) 25, 119, 122
Bme1390I CCNGG 2 cut(s) 20, 235
Bme18I GGWCC 1 cut(s) 299
BmeT110I CYCGRG 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 2 cut(s) 145, 232
BmrFI CCNGG 2 cut(s) 20, 235
BmsI GCATC 1 cut(s) 74
BplI GAGNNNNNCTC 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 237
Bpu14I TTCGAA 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bse1I ACTGG 1 cut(s) 306
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 2 cut(s) 81, 242
BseNI ACTGG 1 cut(s) 306
BseRI GAGGAG 3 cut(s) 64, 141, 234
Bsh1236I CGCG 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 89
BsiHKCI CYCGRG 1 cut(s) 97
BsiSI CCGG 1 cut(s) 20
BsmI GAATGC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 97
Bsp119I TTCGAA 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 4 cut(s) 27, 80, 195, 326
BspACI CCGC 7 cut(s) 23, 63, 118, 120, 123, 147, 201
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 145, 232
BspT104I TTCGAA 1 cut(s) 180
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 4 cut(s) 27, 80, 195, 326
Bst2UI CCWGG 1 cut(s) 235
BstBI TTCGAA 1 cut(s) 180
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 2 cut(s) 81, 242
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 4 cut(s) 30, 83, 198, 329
BstMBI GATC 4 cut(s) 27, 80, 195, 326
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstNI CCWGG 1 cut(s) 235
BstSCI CCNGG 2 cut(s) 18, 233
BstSFI CTRYAG 1 cut(s) 91
BstUI CGCG 1 cut(s) 120
BtgI CCRYGG 1 cut(s) 118
BtsCI GGATG 2 cut(s) 81, 242
Cfr13I GGNCC 1 cut(s) 299
Cfr42I CCGCGG 1 cut(s) 121
Csp6I GTAC 1 cut(s) 16
CviJI RGCY 5 cut(s) 87, 96, 215, 233, 305
CviKI_1 RGCY 5 cut(s) 87, 96, 215, 233, 305
CviQI GTAC 1 cut(s) 16
DpnI GATC 4 cut(s) 29, 82, 197, 328
DpnII GATC 4 cut(s) 27, 80, 195, 326
DrdI GACNNNNNNGTC 2 cut(s) 167, 306
DseDI GACNNNNNNGTC 2 cut(s) 167, 306
EciI GGCGGA 2 cut(s) 138, 216
Ecl136II GAGCTC 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 299
Eco53kI GAGCTC 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 97
EcoICRI GAGCTC 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 233
EcoT38I GRGCYC 1 cut(s) 89
FaiI YATR 1 cut(s) 93
FblI GTMKAC 2 cut(s) 174, 319
Fnu4HI GCNGC 3 cut(s) 24, 118, 121
FokI GGATG 2 cut(s) 88, 229
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 3 cut(s) 24, 118, 121
GluI GCNGC 3 cut(s) 24, 118, 121
GsuI CTGGAG 1 cut(s) 237
HapII CCGG 1 cut(s) 20
HincII GTYRAC 4 cut(s) 160, 175, 240, 320
HindII GTYRAC 4 cut(s) 160, 175, 240, 320
HinfI GANTC 2 cut(s) 257, 321
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 4 cut(s) 160, 175, 240, 320
Hpy188I TCNGA 3 cut(s) 70, 287, 326
Hpy188III TCNNGA 1 cut(s) 330
Hpy8I GTNNAC 4 cut(s) 160, 175, 240, 320
Hpy99I CGWCG 2 cut(s) 176, 315
HpyAV CCTTC 2 cut(s) 221, 276
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
KspI CCGCGG 1 cut(s) 121
Kzo9I GATC 4 cut(s) 27, 80, 195, 326
LmnI GCTCC 2 cut(s) 92, 230
LpnPI CCDG 7 cut(s) 33, 201, 220, 247, 255, 315, 319
LweI GCATC 1 cut(s) 74
MalI GATC 4 cut(s) 29, 82, 197, 328
MboI GATC 4 cut(s) 27, 80, 195, 326
MboII GAAGA 2 cut(s) 244, 274
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 1 cut(s) 182
MlyI GAGTC 1 cut(s) 315
MslI CAYNNNNRTG 1 cut(s) 70
MspA1I CMGCKG 2 cut(s) 120, 149
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 2 cut(s) 20, 235
Mva1269I GAATGC 1 cut(s) 278
MvaI CCWGG 1 cut(s) 235
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 93
NciI CCSGG 1 cut(s) 20
NdeII GATC 4 cut(s) 27, 80, 195, 326
NlaIV GGNNCC 2 cut(s) 145, 232
NspV TTCGAA 1 cut(s) 180
PaeR7I CTCGAG 1 cut(s) 97
PcsI WCGNNNNNNNCGW 4 cut(s) 104, 168, 177, 316
PctI GAATGC 1 cut(s) 278
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 3 cut(s) 25, 119, 122
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
Psp124BI GAGCTC 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PspN4I GGNNCC 2 cut(s) 145, 232
PspPI GGNCC 1 cut(s) 299
PspXI VCTCGAGB 1 cut(s) 97
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
RseI CAYNNNNRTG 1 cut(s) 70
SacI GAGCTC 1 cut(s) 89
SacII CCGCGG 1 cut(s) 121
SalI GTCGAC 2 cut(s) 173, 318
SatI GCNGC 3 cut(s) 24, 118, 121
Sau3AI GATC 4 cut(s) 27, 80, 195, 326
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 1 cut(s) 315
ScrFI CCNGG 2 cut(s) 20, 235
SduI GDGCHC 1 cut(s) 89
SetI ASST 6 cut(s) 56, 89, 98, 104, 274, 319
SfaNI GCATC 1 cut(s) 74
SfcI CTRYAG 1 cut(s) 91
Sfr274I CTCGAG 1 cut(s) 97
Sfr303I CCGCGG 1 cut(s) 121
SfuI TTCGAA 1 cut(s) 180
SgrBI CCGCGG 1 cut(s) 121
SinI GGWCC 1 cut(s) 299
SlaI CTCGAG 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 70
SmlI CTYRAG 2 cut(s) 11, 97
SmoI CTYRAG 2 cut(s) 11, 97
Sse9I AATT 1 cut(s) 182
SsiI CCGC 7 cut(s) 23, 63, 118, 120, 123, 147, 201
SstI GAGCTC 1 cut(s) 89
StyD4I CCNGG 2 cut(s) 18, 233
TaqI TCGA 8 cut(s) 83, 98, 107, 174, 180, 255, 313, 319
TasI AATT 1 cut(s) 182
TauI GCSGC 3 cut(s) 26, 120, 123
TfiI GAWTC 1 cut(s) 257
TspGWI ACGGA 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 299
XapI RAATTY 1 cut(s) 182
XhoI CTCGAG 1 cut(s) 97
XmiI GTMKAC 2 cut(s) 174, 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.