Rw0G007150

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00270
OG0003271
Physical Location & Seq
Reverse (-)
50922 .. 51941
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G007150.1

Sequence Viewer

Length: 906 bp
ATGTCTGGCTCTTTAGAAAGAATACAATCTCACAGCTCAACGATGGACTTTTGCGGCTCTAGCCATGGTTGGTTAATTAGCCACAGTAGATACATTCAACACATATGCTGTGAAGCCTGTGTGGTTGTACAACTCTGGAACCCTTTCGAAAAAGCTGCAGGGTCTCCTCTTTGTCTTCCTTCCTTGCAGTGTTGCTGGTGCTATGACCTTCGAAAGGTTATCCTGTTAGTTGATCCATCTATGAATGGGGATAACAATTATATGGTTGTAGCACTCAACACTTACAACTTGGCTCTCTTCAGAGCAGGCCAAAAAGATTGGACTTGCATCCGGAATTTAGAAGAGTGTAATGATGTTGTACTCTATAAAAGTCGAATCTATGGAGTTGGACGGAGGAGGTGTCTTTGGTCATTGAAAGTTAATCACAGCAGTACTGAAACCCATTCAAGTCCGCCATCGCCAGAACTAATTGCACTCAAGAATTGTACAGATTATAAGCTAGAGCGAGGGTATATTGTGGAATCAAATACCACAGGAGACCTATTGCTTGTTCAGAGAATTTGTAATCTGCAAACGCCATATCCCTACGAGCCGTACAGCTTCAAGATATACAAGTCGGTGTTCGATGACGACGGATCTCTTGTGCGACAAGTTGAGATAAAAAGTGTAGGAGATGAGGCTATATTCGTAGGAGGCGGCCAATCTGTTTCTGTTTTTGCTTCAAAGTTTCCTGCATGTCAGCCAAACTCCATATATTACACAACTGACTTAGGAGAAACTCCAAAAACAATAGGTGTCTTCAATATACAAGATGGAACCATCACCCAACTAGACCCTATAGATGGTTTGCACAAGCGCATGCGTCTAGCACTTTGGATTCTGCCACGGTGTAATGGACTCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

301

Amino Acids

33.85

Weight (kDa)

6.64

Isoelectric Point (pI)

51.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 11 - 268 2.9e-40 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 495
AccIII TCCGGA 1 cut(s) 330
AciI CCGC 3 cut(s) 54, 452, 696
AclWI GGATC 2 cut(s) 227, 643
AcoI YGGCCR 1 cut(s) 697
AcsI RAATTY 2 cut(s) 334, 558
AcuI CTGAAG 1 cut(s) 283
AfaI GTAC 5 cut(s) 129, 360, 433, 487, 596
AfiI CCNNNNNNNGG 2 cut(s) 214, 842
AgsI TTSAA 6 cut(s) 98, 415, 447, 604, 723, 802
AluBI AGCT 4 cut(s) 36, 155, 499, 600
AluI AGCT 4 cut(s) 36, 155, 499, 600
Alw26I GTCTC 2 cut(s) 168, 531
AlwI GGATC 2 cut(s) 227, 643
Aor13HI TCCGGA 1 cut(s) 330
AoxI GGCC 2 cut(s) 307, 697
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 2 cut(s) 334, 558
Asp700I GAANNNNTTC 1 cut(s) 143
AspLEI GCGC 1 cut(s) 858
AsuHPI GGTGA 1 cut(s) 814
AsuII TTCGAA 2 cut(s) 147, 211
BbsI GAAGAC 2 cut(s) 167, 790
BbvI GCAGC 1 cut(s) 142
BccI CCATC 6 cut(s) 37, 244, 463, 806, 827, 836
BceAI ACGGC 1 cut(s) 577
BcgI CGANNNNNNTGC 2 cut(s) 137, 171
BcoDI GTCTC 2 cut(s) 168, 531
BfaI CTAG 4 cut(s) 60, 500, 830, 866
BfmI CTRYAG 2 cut(s) 156, 837
BisI GCNGC 3 cut(s) 55, 156, 697
BlsI GCNGC 3 cut(s) 56, 157, 698
BmcAI AGTACT 1 cut(s) 433
BmiI GGNNCC 2 cut(s) 140, 817
BmsI GCATC 1 cut(s) 336
BpiI GAAGAC 2 cut(s) 167, 790
Bpu14I TTCGAA 2 cut(s) 147, 211
BpuEI CTTGAG 1 cut(s) 461
BsaI GGTCTC 2 cut(s) 168, 531
BsaJI CCNNGG 2 cut(s) 64, 884
BsaWI WCCGGW 1 cut(s) 330
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 842
BseAI TCCGGA 1 cut(s) 330
BseDI CCNNGG 2 cut(s) 64, 884
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 2 cut(s) 214, 842
BseRI GAGGAG 2 cut(s) 156, 409
BseXI GCAGC 1 cut(s) 142
BshFI GGCC 2 cut(s) 309, 699
BsiSI CCGG 1 cut(s) 331
BslI CCNNNNNNNGG 2 cut(s) 214, 842
BsmAI GTCTC 2 cut(s) 168, 531
BsnI GGCC 2 cut(s) 309, 699
Bso31I GGTCTC 2 cut(s) 168, 531
Bsp119I TTCGAA 2 cut(s) 147, 211
Bsp13I TCCGGA 1 cut(s) 330
Bsp1407I TGTACA 2 cut(s) 127, 485
Bsp143I GATC 2 cut(s) 232, 635
Bsp19I CCATGG 1 cut(s) 64
BspACI CCGC 3 cut(s) 54, 452, 696
BspANI GGCC 2 cut(s) 309, 699
BspEI TCCGGA 1 cut(s) 330
BspLI GGNNCC 2 cut(s) 140, 817
BspMAI CTGCAG 1 cut(s) 160
BspPI GGATC 2 cut(s) 227, 643
BspT104I TTCGAA 2 cut(s) 147, 211
BspTNI GGTCTC 2 cut(s) 168, 531
BsrGI TGTACA 2 cut(s) 127, 485
BssECI CCNNGG 2 cut(s) 64, 884
BssMI GATC 2 cut(s) 232, 635
BssT1I CCWWGG 1 cut(s) 64
Bst4CI ACNGT 2 cut(s) 86, 888
Bst6I CTCTTC 2 cut(s) 302, 336
BstAUI TGTACA 2 cut(s) 127, 485
BstBI TTCGAA 2 cut(s) 147, 211
BstC8I GCNNGC 2 cut(s) 307, 860
BstDEI CTNAG 1 cut(s) 769
BstDSI CCRYGG 2 cut(s) 64, 884
BstENI CCTNNNNNAGG 1 cut(s) 212
BstF5I GGATG 1 cut(s) 327
BstHHI GCGC 1 cut(s) 858
BstKTI GATC 2 cut(s) 235, 638
BstMAI GTCTC 2 cut(s) 168, 531
BstMBI GATC 2 cut(s) 232, 635
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstNSI RCATGY 2 cut(s) 738, 862
BstSFI CTRYAG 2 cut(s) 156, 837
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 2 cut(s) 167, 790
BstX2I RGATCY 1 cut(s) 635
BstYI RGATCY 1 cut(s) 635
BsuRI GGCC 2 cut(s) 309, 699
BtgI CCRYGG 2 cut(s) 64, 884
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 1 cut(s) 327
BtsI GCAGTG 1 cut(s) 194
BtsIMutI CAGTG 1 cut(s) 194
Cac8I GCNNGC 2 cut(s) 307, 860
CfoI GCGC 1 cut(s) 858
CseI GACGC 1 cut(s) 851
Csp6I GTAC 5 cut(s) 128, 359, 432, 486, 595
CviAII CATG 3 cut(s) 65, 735, 859
CviQI GTAC 5 cut(s) 128, 359, 432, 486, 595
DdeI CTNAG 1 cut(s) 769
DpnI GATC 2 cut(s) 234, 637
DpnII GATC 2 cut(s) 232, 635
EaeI YGGCCR 1 cut(s) 697
Eam1104I CTCTTC 2 cut(s) 302, 336
EarI CTCTTC 2 cut(s) 302, 336
EciI GGCGGA 1 cut(s) 441
Eco130I CCWWGG 1 cut(s) 64
Eco31I GGTCTC 2 cut(s) 168, 531
Eco57I CTGAAG 1 cut(s) 283
EcoNI CCTNNNNNAGG 1 cut(s) 212
EcoT14I CCWWGG 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 3 cut(s) 68, 738, 862
FatI CATG 3 cut(s) 64, 734, 858
FauNDI CATATG 1 cut(s) 104
Fnu4HI GCNGC 3 cut(s) 55, 156, 697
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 3 cut(s) 55, 156, 697
FspBI CTAG 4 cut(s) 60, 500, 830, 866
GlaI GCGC 1 cut(s) 857
GluI GCNGC 3 cut(s) 55, 156, 697
HaeIII GGCC 2 cut(s) 309, 699
HapII CCGG 1 cut(s) 331
HgaI GACGC 1 cut(s) 851
HhaI GCGC 1 cut(s) 858
Hin1II CATG 3 cut(s) 68, 738, 862
Hin6I GCGC 1 cut(s) 856
HinP1I GCGC 1 cut(s) 856
HinfI GANTC 4 cut(s) 375, 521, 877, 897
HpaII CCGG 1 cut(s) 331
HphI GGTGA 1 cut(s) 814
Hpy188I TCNGA 2 cut(s) 302, 555
Hpy188III TCNNGA 4 cut(s) 136, 331, 478, 604
Hpy99I CGWCG 1 cut(s) 635
HpyAV CCTTC 2 cut(s) 189, 218
HpyCH4III ACNGT 2 cut(s) 86, 888
HpyCH4V TGCA 7 cut(s) 158, 187, 327, 473, 571, 734, 850
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpyF3I CTNAG 1 cut(s) 769
Hsp92II CATG 3 cut(s) 68, 738, 862
HspAI GCGC 1 cut(s) 856
Kpn2I TCCGGA 1 cut(s) 330
Kzo9I GATC 2 cut(s) 232, 635
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 1 cut(s) 336
MaeI CTAG 4 cut(s) 60, 500, 830, 866
MalI GATC 2 cut(s) 234, 637
MboI GATC 2 cut(s) 232, 635
MboII GAAGA 4 cut(s) 167, 289, 353, 790
MflI RGATCY 1 cut(s) 635
MluCI AATT 6 cut(s) 75, 256, 334, 468, 481, 558
MlyI GAGTC 1 cut(s) 891
MmeI TCCRAC 1 cut(s) 367
MnlI CCTC 6 cut(s) 177, 387, 390, 500, 670, 686
MroI TCCGGA 1 cut(s) 330
MroXI GAANNNNTTC 1 cut(s) 143
MseI TTAA 2 cut(s) 74, 420
MspI CCGG 1 cut(s) 331
MwoI GCNNNNNNNGC 1 cut(s) 60
NcoI CCATGG 1 cut(s) 64
NdeI CATATG 1 cut(s) 104
NdeII GATC 2 cut(s) 232, 635
NlaIII CATG 3 cut(s) 68, 738, 862
NlaIV GGNNCC 2 cut(s) 140, 817
NspI RCATGY 2 cut(s) 738, 862
NspV TTCGAA 2 cut(s) 147, 211
PaeI GCATGC 1 cut(s) 862
PdmI GAANNNNTTC 1 cut(s) 143
PfeI GAWTC 3 cut(s) 375, 521, 877
PkrI GCNGC 3 cut(s) 56, 157, 698
PleI GAGTC 1 cut(s) 891
PpsI GAGTC 1 cut(s) 891
PsiI TTATAA 1 cut(s) 495
PspN4I GGNNCC 2 cut(s) 140, 817
PstI CTGCAG 1 cut(s) 160
PsuI RGATCY 1 cut(s) 635
RsaI GTAC 5 cut(s) 129, 360, 433, 487, 596
RsaNI GTAC 5 cut(s) 128, 359, 432, 486, 595
SaqAI TTAA 2 cut(s) 74, 420
SatI GCNGC 3 cut(s) 55, 156, 697
Sau3AI GATC 2 cut(s) 232, 635
ScaI AGTACT 1 cut(s) 433
SchI GAGTC 1 cut(s) 891
SetI ASST 9 cut(s) 38, 157, 210, 219, 401, 501, 543, 602, 796
SfaNI GCATC 1 cut(s) 336
SfcI CTRYAG 2 cut(s) 156, 837
SfuI TTCGAA 2 cut(s) 147, 211
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
SphI GCATGC 1 cut(s) 862
Sse9I AATT 6 cut(s) 75, 256, 334, 468, 481, 558
SsiI CCGC 3 cut(s) 54, 452, 696
SspMI CTAG 4 cut(s) 60, 500, 830, 866
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 2 cut(s) 86, 888
TaqI TCGA 4 cut(s) 147, 211, 373, 624
TasI AATT 6 cut(s) 75, 256, 334, 468, 481, 558
TatI WGTACW 4 cut(s) 127, 358, 431, 485
TauI GCSGC 2 cut(s) 57, 699
TfiI GAWTC 3 cut(s) 375, 521, 877
Tru1I TTAA 2 cut(s) 74, 420
Tru9I TTAA 2 cut(s) 74, 420
TscAI CASTG 1 cut(s) 194
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 257
TspGWI ACGGA 2 cut(s) 406, 648
TspRI CASTG 1 cut(s) 194
XagI CCTNNNNNAGG 1 cut(s) 212
XapI RAATTY 2 cut(s) 334, 558
XceI RCATGY 2 cut(s) 738, 862
XmnI GAANNNNTTC 1 cut(s) 143
XspI CTAG 4 cut(s) 60, 500, 830, 866
ZrmI AGTACT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.