Rh5BG194000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003271
Physical Location & Seq
Forward (+)
21399001 .. 21399255
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG194000.1

Sequence Viewer

Length: 255 bp
ATGAATCGCAGCAGCGGAGGAGGACTTGGGAGTGGAACAGCCGTCATCGTTGGCGGAGAAGTCGTCAACTTCGAATTCGGCGCTGTGATCCGTAGAGAAGTGGTGGCTGGAGGAGGTGAAGGAGCCTGGTCAACATCCCCAATCTCCGATTCACTTCCTTCAGGTTCAGCATTCTTCCGATCTGGATTAGGACCATTCAGTCTTCGAGGTCGACTCCGATCTGGACTGAGTCGTCGAGGTCGATTCCTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

8.66

Weight (kDa)

11.82

Isoelectric Point (pI)

62.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 198, 231
AccI GTMKAC 1 cut(s) 211
AciI CCGC 2 cut(s) 15, 54
AclWI GGATC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 144
AjnI CCWGG 1 cut(s) 125
AjuI GAANNNNNNNTTGG 2 cut(s) 133, 165
AlwI GGATC 1 cut(s) 82
ApeKI GCWGC 2 cut(s) 9, 12
ApoI RAATTY 1 cut(s) 74
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 128
AsuII TTCGAA 1 cut(s) 72
AvaII GGWCC 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 194
BbvI GCAGC 2 cut(s) 21, 24
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 127
BfoI RGCGCY 1 cut(s) 84
BisI GCNGC 2 cut(s) 10, 13
BlsI GCNGC 2 cut(s) 11, 14
Bme1390I CCNGG 1 cut(s) 127
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 194
BplI GAGNNNNNCTC 2 cut(s) 198, 230
BpmI CTGGAG 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
BseBI CCWGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 218
BseRI GAGGAG 2 cut(s) 33, 126
BseXI GCAGC 2 cut(s) 21, 24
BsmI GAATGC 1 cut(s) 170
Bsp119I TTCGAA 1 cut(s) 72
Bsp143I GATC 3 cut(s) 87, 179, 218
BspACI CCGC 2 cut(s) 15, 54
BspCNI CTCAG 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 124
BspPI GGATC 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 72
BssMI GATC 3 cut(s) 87, 179, 218
Bst2UI CCWGG 1 cut(s) 127
BstBI TTCGAA 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 227
BstF5I GGATG 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 3 cut(s) 90, 182, 221
BstMBI GATC 3 cut(s) 87, 179, 218
BstNI CCWGG 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 125
BstV1I GCAGC 2 cut(s) 21, 24
BstV2I GAAGAC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 134
CfoI GCGC 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 191
CviJI RGCY 3 cut(s) 41, 107, 125
CviKI_1 RGCY 3 cut(s) 41, 107, 125
DdeI CTNAG 1 cut(s) 227
DpnI GATC 3 cut(s) 89, 181, 220
DpnII GATC 3 cut(s) 87, 179, 218
DrdI GACNNNNNNGTC 2 cut(s) 198, 231
DseDI GACNNNNNNGTC 2 cut(s) 198, 231
EciI GGCGGA 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 144
EcoRI GAATTC 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 125
FblI GTMKAC 1 cut(s) 211
Fnu4HI GCNGC 2 cut(s) 10, 13
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 2 cut(s) 10, 13
GlaI GCGC 1 cut(s) 82
GluI GCNGC 2 cut(s) 10, 13
GsuI CTGGAG 1 cut(s) 129
HaeII RGCGCY 1 cut(s) 84
HhaI GCGC 1 cut(s) 83
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HincII GTYRAC 3 cut(s) 67, 132, 212
HindII GTYRAC 3 cut(s) 67, 132, 212
HinfI GANTC 5 cut(s) 4, 149, 213, 229, 243
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 3 cut(s) 67, 132, 212
Hpy188I TCNGA 3 cut(s) 148, 179, 218
Hpy188III TCNNGA 2 cut(s) 183, 222
Hpy8I GTNNAC 3 cut(s) 67, 132, 212
Hpy99I CGWCG 1 cut(s) 237
HpyAV CCTTC 2 cut(s) 113, 168
HpyF3I CTNAG 1 cut(s) 227
HspAI GCGC 1 cut(s) 81
Kzo9I GATC 3 cut(s) 87, 179, 218
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 7 cut(s) 93, 112, 139, 147, 168, 207, 235
Lsp1109I GCAGC 2 cut(s) 21, 24
MalI GATC 3 cut(s) 89, 181, 220
MboI GATC 3 cut(s) 87, 179, 218
MboII GAAGA 2 cut(s) 166, 194
MluCI AATT 1 cut(s) 74
MlyI GAGTC 2 cut(s) 207, 238
MnlI CCTC 6 cut(s) 11, 14, 104, 107, 200, 230
MspA1I CMGCKG 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 127
Mva1269I GAATGC 1 cut(s) 170
MvaI CCWGG 1 cut(s) 127
NdeII GATC 3 cut(s) 87, 179, 218
NlaIV GGNNCC 1 cut(s) 124
NspV TTCGAA 1 cut(s) 72
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 238
PctI GAATGC 1 cut(s) 170
PfeI GAWTC 3 cut(s) 4, 149, 243
PflFI GACNNNGTC 1 cut(s) 228
PkrI GCNGC 2 cut(s) 11, 14
PleI GAGTC 2 cut(s) 207, 237
PpsI GAGTC 2 cut(s) 207, 237
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 1 cut(s) 191
PsyI GACNNNGTC 1 cut(s) 228
SalI GTCGAC 1 cut(s) 210
SatI GCNGC 2 cut(s) 10, 13
Sau3AI GATC 3 cut(s) 87, 179, 218
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 2 cut(s) 207, 238
ScrFI CCNGG 1 cut(s) 127
SetI ASST 4 cut(s) 118, 166, 211, 241
SfuI TTCGAA 1 cut(s) 72
SgeI CNNG 9 cut(s) 38, 120, 138, 139, 174, 195, 218, 234, 248
SinI GGWCC 1 cut(s) 191
Sse9I AATT 1 cut(s) 74
SsiI CCGC 2 cut(s) 15, 54
StyD4I CCNGG 1 cut(s) 125
TaqI TCGA 5 cut(s) 72, 205, 211, 235, 241
TasI AATT 1 cut(s) 74
TfiI GAWTC 3 cut(s) 4, 149, 243
TseI GCWGC 2 cut(s) 9, 12
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 80
Tth111I GACNNNGTC 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 191
XapI RAATTY 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.