Rh7AG408000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0003271
Physical Location & Seq
Reverse (-)
54307494 .. 54308006
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG408000.1

Sequence Viewer

Length: 270 bp
ATGAATAGTCGCGGCGGAGGAGGACTTGGGAGTGGAACCGCCGTCATCGTTGGCGGAGAAGTCGTCCACTTCGAATTCGGCGCTGTGATCCGCGGAGAAGTGGTGGCTAGAGGAGGTGAAGGAGCCTGGTCAACATCCCCAATCTCCGATTCACTTCCTTCAGGTTCAGCATTCTTCCGATCTGGATTAGGACCAGCTAGTCGTCGAGGTCGACTCTTATCTGGACCGAGGTCGATTCCTCTGGTGACGACGCCGTGGTCGGCGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

8.88

Weight (kDa)

11.52

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 198, 256
AccI GTMKAC 1 cut(s) 211
AccII CGCG 2 cut(s) 12, 93
AciI CCGC 7 cut(s) 12, 15, 39, 54, 91, 93, 263
AclWI GGATC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 144
AcyI GRCGYC 1 cut(s) 251
AjnI CCWGG 1 cut(s) 125
AjuI GAANNNNNNNTTGG 2 cut(s) 133, 165
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
AlwI GGATC 1 cut(s) 82
AoxI GGCC 1 cut(s) 264
ApoI RAATTY 1 cut(s) 74
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 2 cut(s) 191, 224
AsuHPI GGTGA 2 cut(s) 128, 256
AsuII TTCGAA 1 cut(s) 72
AvaII GGWCC 2 cut(s) 191, 224
BceAI ACGGC 2 cut(s) 26, 238
BciT130I CCWGG 1 cut(s) 127
BfaI CTAG 2 cut(s) 108, 198
BfoI RGCGCY 1 cut(s) 84
BisI GCNGC 2 cut(s) 13, 264
BlsI GCNGC 2 cut(s) 14, 265
Bme1390I CCNGG 1 cut(s) 127
Bme18I GGWCC 2 cut(s) 191, 224
BmgT120I GGNCC 2 cut(s) 191, 224
BmiI GGNNCC 2 cut(s) 37, 124
BmrFI CCNGG 1 cut(s) 127
BoxI GACNNNNGTC 1 cut(s) 229
BplI GAGNNNNNCTC 2 cut(s) 198, 230
Bpu14I TTCGAA 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 251
BsaJI CCNNGG 3 cut(s) 91, 227, 254
BsaXI ACNNNNNCTCC 4 cut(s) 48, 78, 87, 117
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 3 cut(s) 91, 227, 254
BseGI GGATG 1 cut(s) 134
BseRI GAGGAG 2 cut(s) 33, 126
Bsh1236I CGCG 2 cut(s) 12, 93
BshFI GGCC 1 cut(s) 266
BsmI GAATGC 1 cut(s) 170
BsnI GGCC 1 cut(s) 266
Bsp119I TTCGAA 1 cut(s) 72
Bsp143I GATC 2 cut(s) 87, 179
BspACI CCGC 7 cut(s) 12, 15, 39, 54, 91, 93, 263
BspANI GGCC 1 cut(s) 266
BspFNI CGCG 2 cut(s) 12, 93
BspLI GGNNCC 2 cut(s) 37, 124
BspPI GGATC 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 72
BssECI CCNNGG 3 cut(s) 91, 227, 254
BssMI GATC 2 cut(s) 87, 179
BssNI GRCGYC 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 127
BstACI GRCGYC 1 cut(s) 251
BstBI TTCGAA 1 cut(s) 72
BstDSI CCRYGG 2 cut(s) 91, 254
BstF5I GGATG 1 cut(s) 134
BstFNI CGCG 2 cut(s) 12, 93
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 2 cut(s) 90, 182
BstMBI GATC 2 cut(s) 87, 179
BstNI CCWGG 1 cut(s) 127
BstPAI GACNNNNGTC 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 125
BstUI CGCG 2 cut(s) 12, 93
BsuRI GGCC 1 cut(s) 266
BtgI CCRYGG 2 cut(s) 91, 254
BtsCI GGATG 1 cut(s) 134
CfoI GCGC 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 191, 224
Cfr42I CCGCGG 1 cut(s) 94
CseI GACGC 1 cut(s) 259
CviJI RGCY 4 cut(s) 107, 125, 197, 266
CviKI_1 RGCY 4 cut(s) 107, 125, 197, 266
DpnI GATC 2 cut(s) 89, 181
DpnII GATC 2 cut(s) 87, 179
DrdI GACNNNNNNGTC 2 cut(s) 198, 256
DseDI GACNNNNNNGTC 2 cut(s) 198, 256
EciI GGCGGA 2 cut(s) 30, 69
Eco47I GGWCC 2 cut(s) 191, 224
Eco57I CTGAAG 1 cut(s) 144
EcoRI GAATTC 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 125
FblI GTMKAC 1 cut(s) 211
Fnu4HI GCNGC 2 cut(s) 13, 264
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 2 cut(s) 13, 264
FspBI CTAG 2 cut(s) 108, 198
GlaI GCGC 1 cut(s) 82
GluI GCNGC 2 cut(s) 13, 264
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 1 cut(s) 266
HgaI GACGC 1 cut(s) 259
HhaI GCGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 251
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HincII GTYRAC 2 cut(s) 132, 212
HindII GTYRAC 2 cut(s) 132, 212
HinfI GANTC 3 cut(s) 149, 213, 235
HphI GGTGA 2 cut(s) 128, 256
Hpy166II GTNNAC 3 cut(s) 67, 132, 212
Hpy188I TCNGA 2 cut(s) 148, 179
Hpy188III TCNNGA 2 cut(s) 183, 222
Hpy8I GTNNAC 3 cut(s) 67, 132, 212
Hpy99I CGWCG 2 cut(s) 207, 253
HpyAV CCTTC 2 cut(s) 113, 168
Hsp92I GRCGYC 1 cut(s) 251
HspAI GCGC 1 cut(s) 81
KspI CCGCGG 1 cut(s) 94
Kzo9I GATC 2 cut(s) 87, 179
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 7 cut(s) 112, 139, 147, 168, 207, 207, 227
MaeI CTAG 2 cut(s) 108, 198
MaeIII GTNAC 1 cut(s) 244
MalI GATC 2 cut(s) 89, 181
MboI GATC 2 cut(s) 87, 179
MboII GAAGA 1 cut(s) 166
MluCI AATT 1 cut(s) 74
MlyI GAGTC 1 cut(s) 207
MnlI CCTC 7 cut(s) 11, 14, 104, 107, 200, 222, 249
MspA1I CMGCKG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 127
Mva1269I GAATGC 1 cut(s) 170
MvaI CCWGG 1 cut(s) 127
MvnI CGCG 2 cut(s) 12, 93
NdeII GATC 2 cut(s) 87, 179
NlaIV GGNNCC 2 cut(s) 37, 124
NmuCI GTSAC 1 cut(s) 244
NspV TTCGAA 1 cut(s) 72
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 208
PctI GAATGC 1 cut(s) 170
PfeI GAWTC 2 cut(s) 149, 235
PkrI GCNGC 2 cut(s) 14, 265
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
PshAI GACNNNNGTC 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 2 cut(s) 37, 124
PspPI GGNCC 2 cut(s) 191, 224
SacII CCGCGG 1 cut(s) 94
SalI GTCGAC 1 cut(s) 210
SatI GCNGC 2 cut(s) 13, 264
Sau3AI GATC 2 cut(s) 87, 179
Sau96I GGNCC 2 cut(s) 191, 224
SchI GAGTC 1 cut(s) 207
ScrFI CCNGG 1 cut(s) 127
SetI ASST 5 cut(s) 118, 166, 199, 211, 233
Sfr303I CCGCGG 1 cut(s) 94
SfuI TTCGAA 1 cut(s) 72
SgrBI CCGCGG 1 cut(s) 94
SinI GGWCC 2 cut(s) 191, 224
Sse9I AATT 1 cut(s) 74
SsiI CCGC 7 cut(s) 12, 15, 39, 54, 91, 93, 263
SspMI CTAG 2 cut(s) 108, 198
StyD4I CCNGG 1 cut(s) 125
TaqI TCGA 4 cut(s) 72, 205, 211, 233
TaqII GACCGA 1 cut(s) 241
TasI AATT 1 cut(s) 74
TauI GCSGC 2 cut(s) 15, 266
TfiI GAWTC 2 cut(s) 149, 235
TseFI GTSAC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 191, 224
XapI RAATTY 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 211
XspI CTAG 2 cut(s) 108, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.