RLG00000034589

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003271
Physical Location & Seq
Forward (+)
45459495 .. 45459894
400 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034589

Sequence Viewer

Length: 312 bp
ATGAATCACTGCGGCGGAGGAGGACTTGGGAGTGGAACCGCCGTCATCGTTGGTGGAGAAGTCGTCGACTTCGAATTCGGCGTTGTGATCCGTGGAGAAGTGGACCAGCCAGTCGTCGAGGTCGACTCCGATCTGGACCGAGTCGTCGAGATCGATTCCTCTGGTGAAGACGCCGTGGTGGGCGGCCCGAGTCTGGAGGAGAGAGGTAGACTGCCTGGGTCGAGAGCCGGAGCAGGAGACGGCCTGGCTCTTGCGCCGAAGCCGGAGGTCAATAGGAAGGGAAGGAGGGACGGAGAGAGATATCGGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

10.65

Weight (kDa)

4.58

Isoelectric Point (pI)

28.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 110, 143
AccI GTMKAC 3 cut(s) 66, 123, 208
AciI CCGC 4 cut(s) 12, 15, 39, 183
AclWI GGATC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 74
AcyI GRCGYC 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 193
AjnI CCWGG 2 cut(s) 214, 243
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 1 cut(s) 82
Ama87I CYCGRG 1 cut(s) 187
AoxI GGCC 2 cut(s) 184, 241
ApoI RAATTY 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AspLEI GCGC 1 cut(s) 256
AspS9I GGNCC 3 cut(s) 103, 136, 185
AsuHPI GGTGA 1 cut(s) 176
AsuII TTCGAA 1 cut(s) 72
AvaI CYCGRG 1 cut(s) 187
AvaII GGWCC 2 cut(s) 103, 136
BbsI GAAGAC 1 cut(s) 174
BceAI ACGGC 3 cut(s) 26, 158, 256
BciT130I CCWGG 2 cut(s) 216, 245
BcoDI GTCTC 1 cut(s) 231
BfaI CTAG 1 cut(s) 310
BisI GCNGC 2 cut(s) 13, 184
BlsI GCNGC 2 cut(s) 14, 185
Bme1390I CCNGG 2 cut(s) 216, 245
Bme18I GGWCC 2 cut(s) 103, 136
BmeT110I CYCGRG 1 cut(s) 187
BmgT120I GGNCC 3 cut(s) 103, 136, 185
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 2 cut(s) 216, 245
BpiI GAAGAC 1 cut(s) 174
BplI GAGNNNNNCTC 2 cut(s) 110, 142
BpmI CTGGAG 1 cut(s) 215
Bpu14I TTCGAA 1 cut(s) 72
Bsa29I ATCGAT 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 3 cut(s) 91, 174, 215
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 110
BseBI CCWGG 2 cut(s) 216, 245
BseCI ATCGAT 1 cut(s) 153
BseDI CCNNGG 3 cut(s) 91, 174, 215
BseLI CCNNNNNNNGG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 110
BseRI GAGGAG 2 cut(s) 33, 212
BshFI GGCC 2 cut(s) 186, 243
BshVI ATCGAT 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 187
BsiSI CCGG 2 cut(s) 228, 263
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 231
BsmBI CGTCTC 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 2 cut(s) 186, 243
BsoBI CYCGRG 1 cut(s) 187
Bsp119I TTCGAA 1 cut(s) 72
Bsp143I GATC 3 cut(s) 87, 130, 150
BspACI CCGC 4 cut(s) 12, 15, 39, 183
BspANI GGCC 2 cut(s) 186, 243
BspDI ATCGAT 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 72
BsrI ACTGG 1 cut(s) 110
BssECI CCNNGG 3 cut(s) 91, 174, 215
BssMI GATC 3 cut(s) 87, 130, 150
BssNI GRCGYC 1 cut(s) 171
Bst2UI CCWGG 2 cut(s) 216, 245
BstACI GRCGYC 1 cut(s) 171
BstBI TTCGAA 1 cut(s) 72
BstDSI CCRYGG 2 cut(s) 91, 174
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 3 cut(s) 90, 133, 153
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 3 cut(s) 87, 130, 150
BstNI CCWGG 2 cut(s) 216, 245
BstSCI CCNGG 2 cut(s) 214, 243
BstV2I GAAGAC 1 cut(s) 174
Bsu15I ATCGAT 1 cut(s) 153
BsuRI GGCC 2 cut(s) 186, 243
BsuTUI ATCGAT 1 cut(s) 153
BtgI CCRYGG 2 cut(s) 91, 174
BtsI GCAGTG 1 cut(s) 7
BtsIMutI CAGTG 1 cut(s) 7
CfoI GCGC 1 cut(s) 256
Cfr13I GGNCC 3 cut(s) 103, 136, 185
ClaI ATCGAT 1 cut(s) 153
CseI GACGC 1 cut(s) 179
CviJI RGCY 6 cut(s) 109, 186, 227, 243, 248, 262
CviKI_1 RGCY 6 cut(s) 109, 186, 227, 243, 248, 262
DpnI GATC 3 cut(s) 89, 132, 152
DpnII GATC 3 cut(s) 87, 130, 150
DrdI GACNNNNNNGTC 2 cut(s) 110, 143
DseDI GACNNNNNNGTC 2 cut(s) 110, 143
EciI GGCGGA 1 cut(s) 30
Eco32I GATATC 1 cut(s) 302
Eco47I GGWCC 2 cut(s) 103, 136
Eco88I CYCGRG 1 cut(s) 187
EcoRI GAATTC 1 cut(s) 74
EcoRII CCWGG 2 cut(s) 214, 243
EcoRV GATATC 1 cut(s) 302
Esp3I CGTCTC 1 cut(s) 231
FaqI GGGAC 1 cut(s) 302
FblI GTMKAC 3 cut(s) 66, 123, 208
Fnu4HI GCNGC 2 cut(s) 13, 184
Fsp4HI GCNGC 2 cut(s) 13, 184
FspBI CTAG 1 cut(s) 310
GlaI GCGC 1 cut(s) 255
GluI GCNGC 2 cut(s) 13, 184
GsuI CTGGAG 1 cut(s) 215
HaeIII GGCC 2 cut(s) 186, 243
HapII CCGG 2 cut(s) 228, 263
HgaI GACGC 1 cut(s) 179
HhaI GCGC 1 cut(s) 256
Hin1I GRCGYC 1 cut(s) 171
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HincII GTYRAC 2 cut(s) 67, 124
HindII GTYRAC 2 cut(s) 67, 124
HinfI GANTC 5 cut(s) 4, 125, 141, 155, 190
HpaII CCGG 2 cut(s) 228, 263
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 4 cut(s) 67, 103, 124, 209
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 5 cut(s) 134, 148, 194, 222, 305
Hpy8I GTNNAC 4 cut(s) 67, 103, 124, 209
Hpy99I CGWCG 3 cut(s) 68, 119, 149
HpyAV CCTTC 2 cut(s) 271, 276
Hsp92I GRCGYC 1 cut(s) 171
HspAI GCGC 1 cut(s) 254
Kzo9I GATC 3 cut(s) 87, 130, 150
LmnI GCTCC 1 cut(s) 230
MaeI CTAG 1 cut(s) 310
MalI GATC 3 cut(s) 89, 132, 152
MboI GATC 3 cut(s) 87, 130, 150
MboII GAAGA 1 cut(s) 179
MluCI AATT 1 cut(s) 74
MlyI GAGTC 3 cut(s) 119, 150, 199
MnlI CCTC 8 cut(s) 11, 14, 112, 169, 190, 197, 259, 279
MspI CCGG 2 cut(s) 228, 263
MspR9I CCNGG 2 cut(s) 216, 245
MvaI CCWGG 2 cut(s) 216, 245
NdeII GATC 3 cut(s) 87, 130, 150
NlaIV GGNNCC 1 cut(s) 37
NspV TTCGAA 1 cut(s) 72
PcsI WCGNNNNNNNCGW 4 cut(s) 69, 78, 120, 150
PfeI GAWTC 2 cut(s) 4, 155
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 2 cut(s) 14, 185
PleI GAGTC 3 cut(s) 119, 149, 198
PpsI GAGTC 3 cut(s) 119, 149, 198
Psp6I CCWGG 2 cut(s) 214, 243
PspGI CCWGG 2 cut(s) 214, 243
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 3 cut(s) 103, 136, 185
PsyI GACNNNGTC 1 cut(s) 140
SalI GTCGAC 2 cut(s) 65, 122
SatI GCNGC 2 cut(s) 13, 184
Sau3AI GATC 3 cut(s) 87, 130, 150
Sau96I GGNCC 3 cut(s) 103, 136, 185
SchI GAGTC 3 cut(s) 119, 150, 199
ScrFI CCNGG 2 cut(s) 216, 245
SetI ASST 3 cut(s) 123, 208, 270
SfuI TTCGAA 1 cut(s) 72
SinI GGWCC 2 cut(s) 103, 136
Sse9I AATT 1 cut(s) 74
SsiI CCGC 4 cut(s) 12, 15, 39, 183
SspMI CTAG 1 cut(s) 310
StyD4I CCNGG 2 cut(s) 214, 243
TaqI TCGA 7 cut(s) 66, 72, 117, 123, 147, 153, 221
TaqII GACCGA 1 cut(s) 153
TasI AATT 1 cut(s) 74
TauI GCSGC 2 cut(s) 15, 186
TfiI GAWTC 2 cut(s) 4, 155
TscAI CASTG 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 80, 306
TspRI CASTG 1 cut(s) 14
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 103, 136
XapI RAATTY 1 cut(s) 74
XmiI GTMKAC 3 cut(s) 66, 123, 208
XspI CTAG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.