RLG00000010115

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003271
Physical Location & Seq
Reverse (-)
63178026 .. 63178425
400 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010115

Sequence Viewer

Length: 312 bp
ATGAATCACCGCGGCAGAGGAGGACTTGGGAGTGGAACCGCCGTCATCGTTGGTGGAGAAGTCGTCGACTTCGAATTCGGCGCTGTGATCCGTGGAGAAGTGGACCAGCCAGTCGTAGAGGTCGACTCCGATCTGGACCGAGTCGTCGAGATCGATTCCTCTGGTGACGACGCCGTGGTGGGCGGCCCAAGTCTGGAGGAGAAAGGTAGACTGCCTGGGTCGAGCGCCGGAGCAGGAGACGGCCTGGCTCGTGCGCCGGAGCCGGAGGTCAATAGGAAGGGAAGGAGGGACGGAGAGAGATATCGGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

10.7

Weight (kDa)

4.6

Isoelectric Point (pI)

26.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 110, 143
AccI GTMKAC 3 cut(s) 66, 123, 208
AccII CGCG 1 cut(s) 12
AciI CCGC 4 cut(s) 10, 12, 39, 183
AclWI GGATC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 74
AcyI GRCGYC 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 193
AjnI CCWGG 2 cut(s) 214, 243
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 1 cut(s) 82
AoxI GGCC 2 cut(s) 184, 241
ApoI RAATTY 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AspLEI GCGC 3 cut(s) 83, 227, 256
AspS9I GGNCC 3 cut(s) 103, 136, 185
AsuHPI GGTGA 1 cut(s) 176
AsuII TTCGAA 1 cut(s) 72
AvaII GGWCC 2 cut(s) 103, 136
BauI CACGAG 1 cut(s) 249
BceAI ACGGC 3 cut(s) 26, 158, 256
BciT130I CCWGG 2 cut(s) 216, 245
BcoDI GTCTC 1 cut(s) 231
BfaI CTAG 1 cut(s) 310
BfoI RGCGCY 2 cut(s) 84, 228
BisI GCNGC 2 cut(s) 13, 184
BlsI GCNGC 2 cut(s) 14, 185
Bme1390I CCNGG 2 cut(s) 216, 245
Bme18I GGWCC 2 cut(s) 103, 136
BmgT120I GGNCC 3 cut(s) 103, 136, 185
BmiI GGNNCC 2 cut(s) 37, 261
BmrFI CCNGG 2 cut(s) 216, 245
BplI GAGNNNNNCTC 2 cut(s) 110, 142
BpmI CTGGAG 1 cut(s) 215
Bpu14I TTCGAA 1 cut(s) 72
Bsa29I ATCGAT 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 4 cut(s) 10, 91, 174, 215
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 110
BseBI CCWGG 2 cut(s) 216, 245
BseCI ATCGAT 1 cut(s) 153
BseDI CCNNGG 4 cut(s) 10, 91, 174, 215
BseLI CCNNNNNNNGG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 110
BseRI GAGGAG 2 cut(s) 33, 212
Bsh1236I CGCG 1 cut(s) 12
BshFI GGCC 2 cut(s) 186, 243
BshVI ATCGAT 1 cut(s) 153
BsiSI CCGG 3 cut(s) 228, 257, 263
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 231
BsmBI CGTCTC 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 2 cut(s) 186, 243
Bsp119I TTCGAA 1 cut(s) 72
Bsp143I GATC 3 cut(s) 87, 130, 150
BspACI CCGC 4 cut(s) 10, 12, 39, 183
BspANI GGCC 2 cut(s) 186, 243
BspDI ATCGAT 1 cut(s) 153
BspFNI CGCG 1 cut(s) 12
BspLI GGNNCC 2 cut(s) 37, 261
BspPI GGATC 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 72
BsrI ACTGG 1 cut(s) 110
BssECI CCNNGG 4 cut(s) 10, 91, 174, 215
BssMI GATC 3 cut(s) 87, 130, 150
BssNI GRCGYC 1 cut(s) 171
BssSI CACGAG 1 cut(s) 249
Bst2BI CACGAG 1 cut(s) 249
Bst2UI CCWGG 2 cut(s) 216, 245
BstACI GRCGYC 1 cut(s) 171
BstBI TTCGAA 1 cut(s) 72
BstDSI CCRYGG 3 cut(s) 10, 91, 174
BstFNI CGCG 1 cut(s) 12
BstH2I RGCGCY 2 cut(s) 84, 228
BstHHI GCGC 3 cut(s) 83, 227, 256
BstKTI GATC 3 cut(s) 90, 133, 153
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 3 cut(s) 87, 130, 150
BstNI CCWGG 2 cut(s) 216, 245
BstSCI CCNGG 2 cut(s) 214, 243
BstUI CGCG 1 cut(s) 12
Bsu15I ATCGAT 1 cut(s) 153
BsuRI GGCC 2 cut(s) 186, 243
BsuTUI ATCGAT 1 cut(s) 153
BtgI CCRYGG 3 cut(s) 10, 91, 174
CfoI GCGC 3 cut(s) 83, 227, 256
Cfr13I GGNCC 3 cut(s) 103, 136, 185
Cfr42I CCGCGG 1 cut(s) 13
ClaI ATCGAT 1 cut(s) 153
CseI GACGC 1 cut(s) 179
CviJI RGCY 5 cut(s) 109, 186, 243, 248, 262
CviKI_1 RGCY 5 cut(s) 109, 186, 243, 248, 262
DpnI GATC 3 cut(s) 89, 132, 152
DpnII GATC 3 cut(s) 87, 130, 150
DrdI GACNNNNNNGTC 2 cut(s) 110, 143
DseDI GACNNNNNNGTC 2 cut(s) 110, 143
Eco32I GATATC 1 cut(s) 302
Eco47I GGWCC 2 cut(s) 103, 136
EcoRI GAATTC 1 cut(s) 74
EcoRII CCWGG 2 cut(s) 214, 243
EcoRV GATATC 1 cut(s) 302
Esp3I CGTCTC 1 cut(s) 231
FaqI GGGAC 1 cut(s) 302
FblI GTMKAC 3 cut(s) 66, 123, 208
Fnu4HI GCNGC 2 cut(s) 13, 184
Fsp4HI GCNGC 2 cut(s) 13, 184
FspBI CTAG 1 cut(s) 310
GlaI GCGC 3 cut(s) 82, 226, 255
GluI GCNGC 2 cut(s) 13, 184
GsuI CTGGAG 1 cut(s) 215
HaeII RGCGCY 2 cut(s) 84, 228
HaeIII GGCC 2 cut(s) 186, 243
HapII CCGG 3 cut(s) 228, 257, 263
HgaI GACGC 1 cut(s) 179
HhaI GCGC 3 cut(s) 83, 227, 256
Hin1I GRCGYC 1 cut(s) 171
Hin6I GCGC 3 cut(s) 81, 225, 254
HinP1I GCGC 3 cut(s) 81, 225, 254
HincII GTYRAC 2 cut(s) 67, 124
HindII GTYRAC 2 cut(s) 67, 124
HinfI GANTC 4 cut(s) 4, 125, 141, 155
HpaII CCGG 3 cut(s) 228, 257, 263
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 4 cut(s) 67, 103, 124, 209
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 4 cut(s) 134, 148, 194, 305
Hpy8I GTNNAC 4 cut(s) 67, 103, 124, 209
Hpy99I CGWCG 3 cut(s) 68, 149, 173
HpyAV CCTTC 2 cut(s) 271, 276
Hsp92I GRCGYC 1 cut(s) 171
HspAI GCGC 3 cut(s) 81, 225, 254
KspI CCGCGG 1 cut(s) 13
Kzo9I GATC 3 cut(s) 87, 130, 150
LmnI GCTCC 2 cut(s) 230, 259
MaeI CTAG 1 cut(s) 310
MaeIII GTNAC 1 cut(s) 164
MalI GATC 3 cut(s) 89, 132, 152
MboI GATC 3 cut(s) 87, 130, 150
MluCI AATT 1 cut(s) 74
MlyI GAGTC 2 cut(s) 119, 150
MnlI CCTC 7 cut(s) 11, 14, 112, 169, 190, 259, 279
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 3 cut(s) 228, 257, 263
MspR9I CCNGG 2 cut(s) 216, 245
MvaI CCWGG 2 cut(s) 216, 245
MvnI CGCG 1 cut(s) 12
NdeII GATC 3 cut(s) 87, 130, 150
NlaIV GGNNCC 2 cut(s) 37, 261
NmuCI GTSAC 1 cut(s) 164
NspV TTCGAA 1 cut(s) 72
PcsI WCGNNNNNNNCGW 3 cut(s) 69, 120, 150
PfeI GAWTC 2 cut(s) 4, 155
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 2 cut(s) 14, 185
PleI GAGTC 2 cut(s) 119, 149
PpsI GAGTC 2 cut(s) 119, 149
Psp6I CCWGG 2 cut(s) 214, 243
PspGI CCWGG 2 cut(s) 214, 243
PspN4I GGNNCC 2 cut(s) 37, 261
PspPI GGNCC 3 cut(s) 103, 136, 185
PsyI GACNNNGTC 1 cut(s) 140
SacII CCGCGG 1 cut(s) 13
SalI GTCGAC 2 cut(s) 65, 122
SatI GCNGC 2 cut(s) 13, 184
Sau3AI GATC 3 cut(s) 87, 130, 150
Sau96I GGNCC 3 cut(s) 103, 136, 185
SchI GAGTC 2 cut(s) 119, 150
ScrFI CCNGG 2 cut(s) 216, 245
SetI ASST 3 cut(s) 123, 208, 270
Sfr303I CCGCGG 1 cut(s) 13
SfuI TTCGAA 1 cut(s) 72
SgrBI CCGCGG 1 cut(s) 13
SinI GGWCC 2 cut(s) 103, 136
Sse9I AATT 1 cut(s) 74
SsiI CCGC 4 cut(s) 10, 12, 39, 183
SspMI CTAG 1 cut(s) 310
StyD4I CCNGG 2 cut(s) 214, 243
TaqI TCGA 6 cut(s) 66, 72, 123, 147, 153, 221
TaqII GACCGA 1 cut(s) 153
TasI AATT 1 cut(s) 74
TauI GCSGC 2 cut(s) 15, 186
TfiI GAWTC 2 cut(s) 4, 155
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 80, 306
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 103, 136
XapI RAATTY 1 cut(s) 74
XmiI GTMKAC 3 cut(s) 66, 123, 208
XspI CTAG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.