RLG00000031600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003271
Physical Location & Seq
Reverse (-)
6592510 .. 6593662
1153 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031600

Sequence Viewer

Length: 381 bp
ATGAATCGCCGTGGCGGAGGAGAACTTGGGAGTGGAACCGCCGTCATCGTTGGCGGAGAAGTCGTCCACTTCGAATTCGGCGCTGTGATCCGTGGAGAAGTGGACCAGCCAGTCGTCGAGGTCGATTCCTCTAGTGACGATGCCGGGGTGGGCGGCCCGAGTCTGGAAGAGAGATGTAGACTGCCTGGGTCGAGCGCCGGAGCCGGAGACGACCTGGCTCTTGCGCCGGAGCCAGAGCGGTGTTTTACGCTCATCAGACATCGGCTTGCAGATTCTGTTGTCGGCGATGTACTGTTGGGGATGAAGACCTCCCTAAGAGGTGATGATGCTTATGGGCTACTTCTCCTTCTCTCGTCTCTAGGCTCTTGGGCTTTGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.02

Weight (kDa)

4.59

Isoelectric Point (pI)

30.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AccBSI CCGCTC 1 cut(s) 238
AccI GTMKAC 1 cut(s) 178
AciI CCGC 5 cut(s) 15, 39, 54, 153, 238
AclWI GGATC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 74
AfaI GTAC 1 cut(s) 291
AfiI CCNNNNNNNGG 1 cut(s) 163
AjnI CCWGG 2 cut(s) 184, 213
Alw26I GTCTC 2 cut(s) 201, 360
AlwI GGATC 1 cut(s) 82
AlwNI CAGNNNCTG 1 cut(s) 275
Ama87I CYCGRG 1 cut(s) 157
AoxI GGCC 1 cut(s) 154
ApoI RAATTY 1 cut(s) 74
AspLEI GCGC 3 cut(s) 83, 197, 226
AspS9I GGNCC 2 cut(s) 103, 155
AsuC2I CCSGG 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 332
AsuII TTCGAA 1 cut(s) 72
AvaI CYCGRG 1 cut(s) 157
AvaII GGWCC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 311
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 2 cut(s) 186, 215
BcnI CCSGG 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 201, 360
BfaI CTAG 2 cut(s) 132, 359
BfoI RGCGCY 2 cut(s) 84, 198
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
Bme1390I CCNGG 3 cut(s) 145, 186, 215
Bme18I GGWCC 1 cut(s) 103
BmeT110I CYCGRG 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 103, 155
BmiI GGNNCC 3 cut(s) 37, 202, 231
BmrFI CCNGG 3 cut(s) 145, 186, 215
BmsI GCATC 2 cut(s) 130, 316
BpiI GAAGAC 1 cut(s) 311
Bpu14I TTCGAA 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 145
BsaJI CCNNGG 4 cut(s) 10, 91, 144, 185
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 110
BseBI CCWGG 2 cut(s) 186, 215
BseDI CCNNGG 4 cut(s) 10, 91, 144, 185
BseGI GGATG 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 163
BseNI ACTGG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 33
BshFI GGCC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 157
BsiSI CCGG 4 cut(s) 144, 198, 204, 227
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 2 cut(s) 201, 360
BsmBI CGTCTC 2 cut(s) 201, 360
BsnI GGCC 1 cut(s) 156
BsoBI CYCGRG 1 cut(s) 157
Bsp119I TTCGAA 1 cut(s) 72
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 5 cut(s) 15, 39, 54, 153, 238
BspANI GGCC 1 cut(s) 156
BspLI GGNNCC 3 cut(s) 37, 202, 231
BspPI GGATC 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 72
BsrBI CCGCTC 1 cut(s) 238
BsrI ACTGG 1 cut(s) 110
BssECI CCNNGG 4 cut(s) 10, 91, 144, 185
BssMI GATC 1 cut(s) 87
Bst2UI CCWGG 2 cut(s) 186, 215
Bst4CI ACNGT 1 cut(s) 294
Bst6I CTCTTC 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 314
BstDSI CCRYGG 2 cut(s) 10, 91
BstF5I GGATG 1 cut(s) 306
BstH2I RGCGCY 2 cut(s) 84, 198
BstHHI GCGC 3 cut(s) 83, 197, 226
BstKTI GATC 1 cut(s) 90
BstMAI GTCTC 2 cut(s) 201, 360
BstMBI GATC 1 cut(s) 87
BstNI CCWGG 2 cut(s) 186, 215
BstSCI CCNGG 3 cut(s) 143, 184, 213
BstV2I GAAGAC 1 cut(s) 311
BsuRI GGCC 1 cut(s) 156
BtgI CCRYGG 2 cut(s) 10, 91
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 267
CaiI CAGNNNCTG 1 cut(s) 275
CfoI GCGC 3 cut(s) 83, 197, 226
Cfr13I GGNCC 2 cut(s) 103, 155
Csp6I GTAC 1 cut(s) 290
CviJI RGCY 9 cut(s) 109, 156, 203, 218, 232, 265, 337, 363, 371
CviKI_1 RGCY 9 cut(s) 109, 156, 203, 218, 232, 265, 337, 363, 371
CviQI GTAC 1 cut(s) 290
DdeI CTNAG 1 cut(s) 314
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
EciI GGCGGA 2 cut(s) 30, 69
Eco47I GGWCC 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 157
EcoRI GAATTC 1 cut(s) 74
EcoRII CCWGG 2 cut(s) 184, 213
Esp3I CGTCTC 2 cut(s) 201, 360
FaiI YATR 1 cut(s) 333
FblI GTMKAC 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 154
FokI GGATG 1 cut(s) 313
Fsp4HI GCNGC 1 cut(s) 154
FspBI CTAG 2 cut(s) 132, 359
GlaI GCGC 3 cut(s) 82, 196, 225
GluI GCNGC 1 cut(s) 154
HaeII RGCGCY 2 cut(s) 84, 198
HaeIII GGCC 1 cut(s) 156
HapII CCGG 4 cut(s) 144, 198, 204, 227
HhaI GCGC 3 cut(s) 83, 197, 226
Hin6I GCGC 3 cut(s) 81, 195, 224
HinP1I GCGC 3 cut(s) 81, 195, 224
HinfI GANTC 4 cut(s) 4, 125, 160, 272
HpaII CCGG 4 cut(s) 144, 198, 204, 227
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 3 cut(s) 67, 103, 179
Hpy188I TCNGA 1 cut(s) 257
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 3 cut(s) 67, 103, 179
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 356
HpyCH4III ACNGT 1 cut(s) 294
HpyCH4V TGCA 2 cut(s) 269, 376
HpyF3I CTNAG 1 cut(s) 314
HspAI GCGC 3 cut(s) 81, 195, 224
Kzo9I GATC 1 cut(s) 87
LmnI GCTCC 2 cut(s) 200, 229
LweI GCATC 2 cut(s) 130, 316
MaeI CTAG 2 cut(s) 132, 359
MaeIII GTNAC 1 cut(s) 134
MalI GATC 1 cut(s) 89
MbiI CCGCTC 1 cut(s) 238
MboI GATC 1 cut(s) 87
MboII GAAGA 2 cut(s) 179, 316
MluCI AATT 1 cut(s) 74
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 5 cut(s) 11, 112, 139, 311, 319
MspI CCGG 4 cut(s) 144, 198, 204, 227
MspR9I CCNGG 3 cut(s) 145, 186, 215
MvaI CCWGG 2 cut(s) 186, 215
NciI CCSGG 1 cut(s) 145
NdeII GATC 1 cut(s) 87
NlaIV GGNNCC 3 cut(s) 37, 202, 231
NmuCI GTSAC 1 cut(s) 134
NspV TTCGAA 1 cut(s) 72
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 120
PfeI GAWTC 3 cut(s) 4, 125, 272
PkrI GCNGC 1 cut(s) 155
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
Psp6I CCWGG 2 cut(s) 184, 213
PspGI CCWGG 2 cut(s) 184, 213
PspN4I GGNNCC 3 cut(s) 37, 202, 231
PspPI GGNCC 2 cut(s) 103, 155
PstNI CAGNNNCTG 1 cut(s) 275
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 2 cut(s) 103, 155
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 3 cut(s) 145, 186, 215
SetI ASST 4 cut(s) 123, 216, 311, 322
SfaNI GCATC 2 cut(s) 130, 316
SfuI TTCGAA 1 cut(s) 72
SinI GGWCC 1 cut(s) 103
Sse9I AATT 1 cut(s) 74
SsiI CCGC 5 cut(s) 15, 39, 54, 153, 238
SspMI CTAG 2 cut(s) 132, 359
StyD4I CCNGG 3 cut(s) 143, 184, 213
TaaI ACNGT 1 cut(s) 294
TaqI TCGA 4 cut(s) 72, 117, 123, 191
TasI AATT 1 cut(s) 74
TatI WGTACW 1 cut(s) 289
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 3 cut(s) 4, 125, 272
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 2 cut(s) 17, 317
TspGWI ACGGA 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 103
XapI RAATTY 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 178
XspI CTAG 2 cut(s) 132, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.