Rh2DG438400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003271
Physical Location & Seq
Reverse (-)
63398506 .. 63398760
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG438400.1

Sequence Viewer

Length: 255 bp
ATGAATCGCCGCGGCGGAGGAGGACTTGGGAGTGGAACCGCTGTCATCGTTGGCGGAGAAGTCGTCGACTTCGAATTCGGCGCTGTGATATGCGAAGAAGTGGTGGCTGGAAGAGGCGAAGGAGCCTGGTCAACATTCCCAATCTCCGATTCACTTCTTTCAGGTTCAGCATTCTTTCGATCTGGATTAGGACCAGCCAGTCGTCGAGGTCGACTCCGATCTGGACCGAGTCGTCGAGGTCGATTCCTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

8.75

Weight (kDa)

11.35

Isoelectric Point (pI)

57.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 198, 231
AccI GTMKAC 2 cut(s) 66, 211
AccII CGCG 1 cut(s) 12
AciI CCGC 5 cut(s) 10, 12, 15, 39, 54
AcsI RAATTY 1 cut(s) 74
AjnI CCWGG 1 cut(s) 125
AjuI GAANNNNNNNTTGG 2 cut(s) 133, 165
ApoI RAATTY 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 2 cut(s) 191, 224
AsuII TTCGAA 1 cut(s) 72
AvaII GGWCC 2 cut(s) 191, 224
BciT130I CCWGG 1 cut(s) 127
BfoI RGCGCY 1 cut(s) 84
BisI GCNGC 2 cut(s) 10, 13
BlsI GCNGC 2 cut(s) 11, 14
Bme1390I CCNGG 1 cut(s) 127
Bme18I GGWCC 2 cut(s) 191, 224
BmgT120I GGNCC 2 cut(s) 191, 224
BmiI GGNNCC 2 cut(s) 37, 124
BmrFI CCNGG 1 cut(s) 127
BplI GAGNNNNNCTC 2 cut(s) 198, 230
Bpu14I TTCGAA 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bse1I ACTGG 1 cut(s) 198
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 10
BseNI ACTGG 1 cut(s) 198
BseRI GAGGAG 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 12
BsmI GAATGC 1 cut(s) 170
Bsp119I TTCGAA 1 cut(s) 72
Bsp143I GATC 2 cut(s) 179, 218
BspACI CCGC 5 cut(s) 10, 12, 15, 39, 54
BspFNI CGCG 1 cut(s) 12
BspLI GGNNCC 2 cut(s) 37, 124
BspT104I TTCGAA 1 cut(s) 72
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 2 cut(s) 179, 218
Bst2UI CCWGG 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 106
BstBI TTCGAA 1 cut(s) 72
BstDSI CCRYGG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 12
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 2 cut(s) 182, 221
BstMBI GATC 2 cut(s) 179, 218
BstNI CCWGG 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 125
BstUI CGCG 1 cut(s) 12
BtgI CCRYGG 1 cut(s) 10
CfoI GCGC 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 191, 224
Cfr42I CCGCGG 1 cut(s) 13
CviJI RGCY 3 cut(s) 107, 125, 197
CviKI_1 RGCY 3 cut(s) 107, 125, 197
DpnI GATC 2 cut(s) 181, 220
DpnII GATC 2 cut(s) 179, 218
DrdI GACNNNNNNGTC 2 cut(s) 198, 231
DseDI GACNNNNNNGTC 2 cut(s) 198, 231
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
EciI GGCGGA 2 cut(s) 30, 69
Eco47I GGWCC 2 cut(s) 191, 224
EcoRI GAATTC 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 125
FaiI YATR 1 cut(s) 91
FblI GTMKAC 2 cut(s) 66, 211
Fnu4HI GCNGC 2 cut(s) 10, 13
Fsp4HI GCNGC 2 cut(s) 10, 13
GlaI GCGC 1 cut(s) 82
GluI GCNGC 2 cut(s) 10, 13
HaeII RGCGCY 1 cut(s) 84
HhaI GCGC 1 cut(s) 83
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HincII GTYRAC 3 cut(s) 67, 132, 212
HindII GTYRAC 3 cut(s) 67, 132, 212
HinfI GANTC 5 cut(s) 4, 149, 213, 229, 243
Hpy166II GTNNAC 3 cut(s) 67, 132, 212
Hpy188I TCNGA 2 cut(s) 148, 218
Hpy188III TCNNGA 2 cut(s) 183, 222
Hpy8I GTNNAC 3 cut(s) 67, 132, 212
Hpy99I CGWCG 3 cut(s) 68, 207, 237
HpyAV CCTTC 1 cut(s) 113
HspAI GCGC 1 cut(s) 81
KspI CCGCGG 1 cut(s) 13
Kzo9I GATC 2 cut(s) 179, 218
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 9 cut(s) 93, 112, 139, 147, 168, 207, 207, 211, 235
MalI GATC 2 cut(s) 181, 220
MboI GATC 2 cut(s) 179, 218
MboII GAAGA 2 cut(s) 107, 123
MluCI AATT 1 cut(s) 74
MlyI GAGTC 2 cut(s) 207, 238
MnlI CCTC 5 cut(s) 11, 14, 107, 200, 230
MspA1I CMGCKG 2 cut(s) 12, 41
MspR9I CCNGG 1 cut(s) 127
Mva1269I GAATGC 1 cut(s) 170
MvaI CCWGG 1 cut(s) 127
MvnI CGCG 1 cut(s) 12
NdeII GATC 2 cut(s) 179, 218
NlaIV GGNNCC 2 cut(s) 37, 124
NspV TTCGAA 1 cut(s) 72
PcsI WCGNNNNNNNCGW 3 cut(s) 69, 208, 238
PctI GAATGC 1 cut(s) 170
PfeI GAWTC 3 cut(s) 4, 149, 243
PflFI GACNNNGTC 1 cut(s) 228
PkrI GCNGC 2 cut(s) 11, 14
PleI GAGTC 2 cut(s) 207, 237
PpsI GAGTC 2 cut(s) 207, 237
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 2 cut(s) 37, 124
PspPI GGNCC 2 cut(s) 191, 224
PsyI GACNNNGTC 1 cut(s) 228
SacII CCGCGG 1 cut(s) 13
SalI GTCGAC 2 cut(s) 65, 210
SatI GCNGC 2 cut(s) 10, 13
Sau3AI GATC 2 cut(s) 179, 218
Sau96I GGNCC 2 cut(s) 191, 224
SchI GAGTC 2 cut(s) 207, 238
ScrFI CCNGG 1 cut(s) 127
SetI ASST 3 cut(s) 166, 211, 241
Sfr303I CCGCGG 1 cut(s) 13
SfuI TTCGAA 1 cut(s) 72
SgrBI CCGCGG 1 cut(s) 13
SinI GGWCC 2 cut(s) 191, 224
Sse9I AATT 1 cut(s) 74
SsiI CCGC 5 cut(s) 10, 12, 15, 39, 54
StyD4I CCNGG 1 cut(s) 125
TaqI TCGA 7 cut(s) 66, 72, 178, 205, 211, 235, 241
TaqII GACCGA 1 cut(s) 241
TasI AATT 1 cut(s) 74
TauI GCSGC 2 cut(s) 12, 15
TfiI GAWTC 3 cut(s) 4, 149, 243
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 228
VpaK11BI GGWCC 2 cut(s) 191, 224
XapI RAATTY 1 cut(s) 74
XmiI GTMKAC 2 cut(s) 66, 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.