Rh5CG491100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003271
Physical Location & Seq
Forward (+)
68410116 .. 68411565
1450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG491100.1

Sequence Viewer

Length: 315 bp
ATGAATCGCCGCGGCAGAGGAGGACTTGGGAGTGGAACCGCCGTCATCGTTGGCGGAGAAGTCGTCGACTTCGAATTCGGCGCTGTGATATGCGAAGAAGTGGACCAGCCAGTCGTCGAGGTCGACTCCGATCTGGACCGAGTCGTCGAGGTCGATTCCTCTGGTGACGACGCTGTGGTGGGCGGCCCGAGTCTGGAGGAGAGAGGTAGACTGCCTGGGTCGAGCGCCGGAGCTCGTGCGCCGGAGCTGGAGACAGCCTGGCTGGTTTTGGACCCATCTAGTACTTATAACCTGCGTACACGTATATTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

10.9

Weight (kDa)

4.23

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
AasI GACNNNNNNGTC 2 cut(s) 110, 143
Acc36I ACCTGC 1 cut(s) 300
AccI GTMKAC 3 cut(s) 66, 123, 208
AccII CGCG 1 cut(s) 12
AciI CCGC 5 cut(s) 10, 12, 39, 54, 183
AcsI RAATTY 1 cut(s) 74
AfaI GTAC 2 cut(s) 283, 298
AfiI CCNNNNNNNGG 1 cut(s) 193
AflIII ACRYGT 1 cut(s) 299
AjnI CCWGG 2 cut(s) 214, 257
AluBI AGCT 2 cut(s) 233, 247
AluI AGCT 2 cut(s) 233, 247
Alw21I GWGCWC 1 cut(s) 235
Alw26I GTCTC 1 cut(s) 245
Ama87I CYCGRG 1 cut(s) 187
AoxI GGCC 1 cut(s) 184
ApoI RAATTY 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AspLEI GCGC 3 cut(s) 83, 227, 241
AspS9I GGNCC 4 cut(s) 103, 136, 185, 271
AsuHPI GGTGA 1 cut(s) 176
AsuII TTCGAA 1 cut(s) 72
AvaI CYCGRG 1 cut(s) 187
AvaII GGWCC 3 cut(s) 103, 136, 271
BanII GRGCYC 1 cut(s) 235
BauI CACGAG 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 235
BccI CCATC 1 cut(s) 283
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 2 cut(s) 216, 259
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 1 cut(s) 279
BfoI RGCGCY 2 cut(s) 84, 228
BfuAI ACCTGC 1 cut(s) 300
BisI GCNGC 3 cut(s) 10, 13, 184
BlsI GCNGC 3 cut(s) 11, 14, 185
BmcAI AGTACT 1 cut(s) 283
Bme1390I CCNGG 2 cut(s) 216, 259
Bme18I GGWCC 3 cut(s) 103, 136, 271
BmeT110I CYCGRG 1 cut(s) 187
BmgT120I GGNCC 4 cut(s) 103, 136, 185, 271
BmiI GGNNCC 2 cut(s) 37, 273
BmrFI CCNGG 2 cut(s) 216, 259
BplI GAGNNNNNCTC 2 cut(s) 110, 142
BpmI CTGGAG 2 cut(s) 215, 269
Bpu14I TTCGAA 1 cut(s) 72
BsaAI YACGTR 1 cut(s) 302
BsaJI CCNNGG 2 cut(s) 10, 215
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 110
BseBI CCWGG 2 cut(s) 216, 259
BseDI CCNNGG 2 cut(s) 10, 215
BseLI CCNNNNNNNGG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 110
BseRI GAGGAG 2 cut(s) 33, 212
Bsh1236I CGCG 1 cut(s) 12
BshFI GGCC 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 235
BsiHKCI CYCGRG 1 cut(s) 187
BsiSI CCGG 2 cut(s) 228, 242
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 245
BsnI GGCC 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 187
Bsp119I TTCGAA 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 235
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 5 cut(s) 10, 12, 39, 54, 183
BspANI GGCC 1 cut(s) 186
BspFNI CGCG 1 cut(s) 12
BspLI GGNNCC 2 cut(s) 37, 273
BspMI ACCTGC 1 cut(s) 300
BspT104I TTCGAA 1 cut(s) 72
BsrI ACTGG 1 cut(s) 110
BssECI CCNNGG 2 cut(s) 10, 215
BssMI GATC 1 cut(s) 130
BssSI CACGAG 1 cut(s) 234
Bst2BI CACGAG 1 cut(s) 234
Bst2UI CCWGG 2 cut(s) 216, 259
BstBAI YACGTR 1 cut(s) 302
BstBI TTCGAA 1 cut(s) 72
BstDSI CCRYGG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 12
BstH2I RGCGCY 2 cut(s) 84, 228
BstHHI GCGC 3 cut(s) 83, 227, 241
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 1 cut(s) 130
BstNI CCWGG 2 cut(s) 216, 259
BstSCI CCNGG 2 cut(s) 214, 257
BstUI CGCG 1 cut(s) 12
BsuRI GGCC 1 cut(s) 186
BtgI CCRYGG 1 cut(s) 10
BveI ACCTGC 1 cut(s) 300
CfoI GCGC 3 cut(s) 83, 227, 241
Cfr13I GGNCC 4 cut(s) 103, 136, 185, 271
Cfr42I CCGCGG 1 cut(s) 13
CseI GACGC 1 cut(s) 179
Csp6I GTAC 2 cut(s) 282, 297
CviJI RGCY 6 cut(s) 109, 186, 233, 247, 257, 262
CviKI_1 RGCY 6 cut(s) 109, 186, 233, 247, 257, 262
CviQI GTAC 2 cut(s) 282, 297
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
DrdI GACNNNNNNGTC 2 cut(s) 110, 143
DseDI GACNNNNNNGTC 2 cut(s) 110, 143
EciI GGCGGA 1 cut(s) 69
Ecl136II GAGCTC 1 cut(s) 233
Eco24I GRGCYC 1 cut(s) 235
Eco47I GGWCC 3 cut(s) 103, 136, 271
Eco53kI GAGCTC 1 cut(s) 233
Eco88I CYCGRG 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 74
EcoRII CCWGG 2 cut(s) 214, 257
EcoT38I GRGCYC 1 cut(s) 235
FaiI YATR 3 cut(s) 91, 288, 305
FblI GTMKAC 3 cut(s) 66, 123, 208
Fnu4HI GCNGC 3 cut(s) 10, 13, 184
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 3 cut(s) 10, 13, 184
FspBI CTAG 1 cut(s) 279
GlaI GCGC 3 cut(s) 82, 226, 240
GluI GCNGC 3 cut(s) 10, 13, 184
GsuI CTGGAG 2 cut(s) 215, 269
HaeII RGCGCY 2 cut(s) 84, 228
HaeIII GGCC 1 cut(s) 186
HapII CCGG 2 cut(s) 228, 242
HgaI GACGC 1 cut(s) 179
HhaI GCGC 3 cut(s) 83, 227, 241
Hin6I GCGC 3 cut(s) 81, 225, 239
HinP1I GCGC 3 cut(s) 81, 225, 239
HincII GTYRAC 2 cut(s) 67, 124
HindII GTYRAC 2 cut(s) 67, 124
HinfI GANTC 5 cut(s) 4, 125, 141, 155, 190
HpaII CCGG 2 cut(s) 228, 242
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 5 cut(s) 67, 103, 124, 209, 299
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 2 cut(s) 134, 194
Hpy8I GTNNAC 5 cut(s) 67, 103, 124, 209, 299
Hpy99I CGWCG 4 cut(s) 68, 119, 149, 173
HpyCH4IV ACGT 1 cut(s) 301
HpySE526I ACGT 1 cut(s) 301
HspAI GCGC 3 cut(s) 81, 225, 239
KspI CCGCGG 1 cut(s) 13
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 2 cut(s) 230, 244
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 301
MaeIII GTNAC 1 cut(s) 164
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 1 cut(s) 107
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 1 cut(s) 74
MlyI GAGTC 3 cut(s) 119, 150, 199
MnlI CCTC 7 cut(s) 11, 14, 112, 142, 169, 190, 197
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 2 cut(s) 228, 242
MspR9I CCNGG 2 cut(s) 216, 259
MvaI CCWGG 2 cut(s) 216, 259
MvnI CGCG 1 cut(s) 12
NdeII GATC 1 cut(s) 130
NlaIV GGNNCC 2 cut(s) 37, 273
NmuCI GTSAC 1 cut(s) 164
NspV TTCGAA 1 cut(s) 72
PcsI WCGNNNNNNNCGW 3 cut(s) 69, 120, 150
PfeI GAWTC 2 cut(s) 4, 155
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 3 cut(s) 11, 14, 185
PleI GAGTC 3 cut(s) 119, 149, 198
PpsI GAGTC 3 cut(s) 119, 149, 198
Ppu21I YACGTR 1 cut(s) 302
PsiI TTATAA 1 cut(s) 288
Psp124BI GAGCTC 1 cut(s) 235
Psp6I CCWGG 2 cut(s) 214, 257
PspGI CCWGG 2 cut(s) 214, 257
PspN4I GGNNCC 2 cut(s) 37, 273
PspPI GGNCC 4 cut(s) 103, 136, 185, 271
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 2 cut(s) 283, 298
RsaNI GTAC 2 cut(s) 282, 297
SacI GAGCTC 1 cut(s) 235
SacII CCGCGG 1 cut(s) 13
SalI GTCGAC 2 cut(s) 65, 122
SatI GCNGC 3 cut(s) 10, 13, 184
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 4 cut(s) 103, 136, 185, 271
ScaI AGTACT 1 cut(s) 283
SchI GAGTC 3 cut(s) 119, 150, 199
ScrFI CCNGG 2 cut(s) 216, 259
SduI GDGCHC 1 cut(s) 235
SetI ASST 7 cut(s) 123, 153, 208, 235, 249, 294, 304
Sfr303I CCGCGG 1 cut(s) 13
SfuI TTCGAA 1 cut(s) 72
SgrBI CCGCGG 1 cut(s) 13
SinI GGWCC 3 cut(s) 103, 136, 271
Sse9I AATT 1 cut(s) 74
SsiI CCGC 5 cut(s) 10, 12, 39, 54, 183
SspMI CTAG 1 cut(s) 279
SstI GAGCTC 1 cut(s) 235
StyD4I CCNGG 2 cut(s) 214, 257
TaiI ACGT 1 cut(s) 304
TaqI TCGA 7 cut(s) 66, 72, 117, 123, 147, 153, 221
TaqII GACCGA 1 cut(s) 153
TasI AATT 1 cut(s) 74
TatI WGTACW 1 cut(s) 281
TauI GCSGC 3 cut(s) 12, 15, 186
TfiI GAWTC 2 cut(s) 4, 155
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 3 cut(s) 103, 136, 271
XapI RAATTY 1 cut(s) 74
XmiI GTMKAC 3 cut(s) 66, 123, 208
XspI CTAG 1 cut(s) 279
ZrmI AGTACT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.