Rh4CG388600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0003271
Physical Location & Seq
Reverse (-)
63982536 .. 63993847
11312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG388600.1

Sequence Viewer

Length: 870 bp
ATGCCGCGGAAAAGCAGAGAAAAACTGTACGGCTCTAAGTCCGAGTCTCAAAGTGACTTGCTTCCCAGAATTGGAGGGCTATCAAAATTTCATATTGTGTTTTTGATTCTGGACAAGCTCGAACCCATTGACCTTCTCCGCTTTGCTGCAGTTTGCAAGGAATGTCTGGCTCTTTCGAAAGAATACAACCTCACAGCTCAACGATGGAGTAATCAAGTGGTTCCCATGCTCTCGACCCTTAAGGAGGAAAAGCTAAGACTCTACAGTGCATATCTGTGTGCAGGAAAAATTTACGACAACATTCAGTTATCAGTTCCTCCTGATAAGAGCTTCTGCGGCTCTAGCCATGGTTGGTTAGCCACAGTAGATACATTCAACACATATGTTGTGAAGCCTGTGTGGTTATACAACTCTGGAACCCTTTCGGAAAAGCTGCAGGGTCTCCTCTTTGTCTTCCTTCCTTGCAGTACGTGTTGCTGGTGCTATGACCTTCGAAAGGTTATCCTGTTAGTTGATCCATCTATGAATGGGGATAACAATTATATGGTTGTAGCACTCACCACTTACAACTTGGCTCTCTTCAGAGCAGGCCAAAAAGATTGGACTTGCATTCGGAATTTAAAAGAGTGTAACGATGTTGTACTCTATAAAAGTCGAATCTATGGAGTTGGACGGAGGAGGTGTCTTTGGTCATTGAAAGTTAATCACAGCAGTACTGAAACCCATTCAAGTCCGCCATCGACAGAACTAATTGCACCCGAGAATTGTACTGATTATAAGCTAGAGCGAGGGTATATTGTGGAATCAAATACCACAGGAGACCTATTGCTTGTTCAGAGAACTTGTAATCTGCAAACGCCATATCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

289

Amino Acids

32.88

Weight (kDa)

8.71

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 95 - 281 4.4e-21 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 777
AccII CGCG 1 cut(s) 7
AciI CCGC 5 cut(s) 5, 7, 139, 336, 734
AclWI GGATC 1 cut(s) 509
AcsI RAATTY 3 cut(s) 86, 288, 616
AcuI CTGAAG 1 cut(s) 565
AfaI GTAC 5 cut(s) 29, 469, 642, 715, 769
AfiI CCNNNNNNNGG 3 cut(s) 71, 244, 496
AflII CTTAAG 1 cut(s) 239
AflIII ACRYGT 1 cut(s) 470
AgsI TTSAA 3 cut(s) 376, 697, 729
AluBI AGCT 6 cut(s) 118, 197, 253, 330, 433, 781
AluI AGCT 6 cut(s) 118, 197, 253, 330, 433, 781
Alw26I GTCTC 3 cut(s) 51, 446, 813
AlwI GGATC 1 cut(s) 509
Ama87I CYCGRG 1 cut(s) 758
AoxI GGCC 1 cut(s) 589
ApeKI GCWGC 2 cut(s) 146, 433
ApoI RAATTY 3 cut(s) 86, 288, 616
Asp700I GAANNNNTTC 1 cut(s) 421
AsuHPI GGTGA 1 cut(s) 550
AsuII TTCGAA 2 cut(s) 176, 493
AvaI CYCGRG 1 cut(s) 758
BbsI GAAGAC 1 cut(s) 445
BbvI GCAGC 2 cut(s) 133, 420
BccI CCATC 3 cut(s) 198, 526, 745
BceAI ACGGC 1 cut(s) 46
BcoDI GTCTC 3 cut(s) 51, 446, 813
BfaI CTAG 2 cut(s) 342, 782
BfmI CTRYAG 3 cut(s) 147, 262, 434
BfrI CTTAAG 1 cut(s) 239
BisI GCNGC 4 cut(s) 5, 147, 337, 434
BlsI GCNGC 4 cut(s) 6, 148, 338, 435
BmcAI AGTACT 1 cut(s) 715
BmeT110I CYCGRG 1 cut(s) 758
BmiI GGNNCC 2 cut(s) 222, 418
BpiI GAAGAC 1 cut(s) 445
Bpu14I TTCGAA 2 cut(s) 176, 493
BsaAI YACGTR 1 cut(s) 471
BsaI GGTCTC 2 cut(s) 446, 813
BsaJI CCNNGG 2 cut(s) 5, 346
BsaXI ACNNNNNCTCC 2 cut(s) 667, 697
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 244, 496
BseDI CCNNGG 2 cut(s) 5, 346
BseLI CCNNNNNNNGG 3 cut(s) 71, 244, 496
BseRI GAGGAG 2 cut(s) 434, 691
BseXI GCAGC 2 cut(s) 133, 420
BsgI GTGCAG 1 cut(s) 300
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 1 cut(s) 591
BsiHKCI CYCGRG 1 cut(s) 758
BslI CCNNNNNNNGG 3 cut(s) 71, 244, 496
BsmAI GTCTC 3 cut(s) 51, 446, 813
BsmI GAATGC 1 cut(s) 609
BsnI GGCC 1 cut(s) 591
Bso31I GGTCTC 2 cut(s) 446, 813
BsoBI CYCGRG 1 cut(s) 758
Bsp119I TTCGAA 2 cut(s) 176, 493
Bsp143I GATC 1 cut(s) 514
Bsp19I CCATGG 1 cut(s) 346
BspACI CCGC 5 cut(s) 5, 7, 139, 336, 734
BspANI GGCC 1 cut(s) 591
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 222, 418
BspMAI CTGCAG 2 cut(s) 151, 438
BspPI GGATC 1 cut(s) 509
BspT104I TTCGAA 2 cut(s) 176, 493
BspTI CTTAAG 1 cut(s) 239
BspTNI GGTCTC 2 cut(s) 446, 813
BssECI CCNNGG 2 cut(s) 5, 346
BssMI GATC 1 cut(s) 514
BssT1I CCWWGG 1 cut(s) 346
Bst4CI ACNGT 3 cut(s) 27, 266, 364
Bst6I CTCTTC 1 cut(s) 584
BstAFI CTTAAG 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 471
BstBI TTCGAA 2 cut(s) 176, 493
BstC8I GCNNGC 1 cut(s) 589
BstDEI CTNAG 2 cut(s) 36, 254
BstDSI CCRYGG 2 cut(s) 5, 346
BstENI CCTNNNNNAGG 2 cut(s) 242, 494
BstFNI CGCG 1 cut(s) 7
BstKTI GATC 1 cut(s) 517
BstMAI GTCTC 3 cut(s) 51, 446, 813
BstMBI GATC 1 cut(s) 514
BstMWI GCNNNNNNNGC 2 cut(s) 336, 342
BstSFI CTRYAG 3 cut(s) 147, 262, 434
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 133, 420
BstV2I GAAGAC 1 cut(s) 445
BsuRI GGCC 1 cut(s) 591
BtgI CCRYGG 2 cut(s) 5, 346
BtsIMutI CAGTG 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 589
Cfr42I CCGCGG 1 cut(s) 8
Csp6I GTAC 5 cut(s) 28, 468, 641, 714, 768
CviAII CATG 2 cut(s) 226, 347
CviQI GTAC 5 cut(s) 28, 468, 641, 714, 768
DdeI CTNAG 2 cut(s) 36, 254
DpnI GATC 1 cut(s) 516
DpnII GATC 1 cut(s) 514
DraI TTTAAA 1 cut(s) 621
Eam1104I CTCTTC 1 cut(s) 584
EarI CTCTTC 1 cut(s) 584
EciI GGCGGA 1 cut(s) 723
Eco130I CCWWGG 1 cut(s) 346
Eco31I GGTCTC 2 cut(s) 446, 813
Eco57I CTGAAG 1 cut(s) 565
Eco88I CYCGRG 1 cut(s) 758
EcoNI CCTNNNNNAGG 2 cut(s) 242, 494
EcoT14I CCWWGG 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 346
FaeI CATG 2 cut(s) 229, 350
FatI CATG 2 cut(s) 225, 346
FauNDI CATATG 1 cut(s) 382
Fnu4HI GCNGC 4 cut(s) 5, 147, 337, 434
Fsp4HI GCNGC 4 cut(s) 5, 147, 337, 434
FspBI CTAG 2 cut(s) 342, 782
GluI GCNGC 4 cut(s) 5, 147, 337, 434
HaeIII GGCC 1 cut(s) 591
Hin1II CATG 2 cut(s) 229, 350
HinfI GANTC 5 cut(s) 44, 106, 258, 657, 803
HphI GGTGA 1 cut(s) 550
Hpy188I TCNGA 5 cut(s) 43, 427, 584, 615, 837
Hpy188III TCNNGA 4 cut(s) 110, 232, 320, 414
HpyAV CCTTC 3 cut(s) 143, 467, 500
HpyCH4III ACNGT 3 cut(s) 27, 266, 364
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 9 cut(s) 149, 156, 269, 281, 436, 465, 609, 755, 853
HpyF10VI GCNNNNNNNGC 2 cut(s) 336, 342
HpyF3I CTNAG 2 cut(s) 36, 254
HpySE526I ACGT 1 cut(s) 470
Hsp92II CATG 2 cut(s) 229, 350
KspI CCGCGG 1 cut(s) 8
Kzo9I GATC 1 cut(s) 514
Lsp1109I GCAGC 2 cut(s) 133, 420
MaeI CTAG 2 cut(s) 342, 782
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 2 cut(s) 53, 629
MalI GATC 1 cut(s) 516
MboI GATC 1 cut(s) 514
MboII GAAGA 2 cut(s) 445, 571
MluCI AATT 7 cut(s) 69, 86, 288, 538, 616, 750, 763
MlyI GAGTC 2 cut(s) 53, 252
MmeI TCCRAC 1 cut(s) 649
MnlI CCTC 8 cut(s) 68, 200, 238, 327, 455, 669, 672, 782
MroXI GAANNNNTTC 1 cut(s) 421
MseI TTAA 3 cut(s) 240, 620, 702
MslI CAYNNNNRTG 1 cut(s) 274
MspA1I CMGCKG 1 cut(s) 7
MspCI CTTAAG 1 cut(s) 239
Mva1269I GAATGC 1 cut(s) 609
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 336, 342
NcoI CCATGG 1 cut(s) 346
NdeI CATATG 1 cut(s) 382
NdeII GATC 1 cut(s) 514
NlaIII CATG 2 cut(s) 229, 350
NlaIV GGNNCC 2 cut(s) 222, 418
NmuCI GTSAC 1 cut(s) 53
NspV TTCGAA 2 cut(s) 176, 493
PctI GAATGC 1 cut(s) 609
PdmI GAANNNNTTC 1 cut(s) 421
PfeI GAWTC 3 cut(s) 106, 657, 803
PkrI GCNGC 4 cut(s) 6, 148, 338, 435
PleI GAGTC 2 cut(s) 52, 252
PpsI GAGTC 2 cut(s) 52, 252
Ppu21I YACGTR 1 cut(s) 471
PsiI TTATAA 1 cut(s) 777
PspN4I GGNNCC 2 cut(s) 222, 418
PstI CTGCAG 2 cut(s) 151, 438
RsaI GTAC 5 cut(s) 29, 469, 642, 715, 769
RsaNI GTAC 5 cut(s) 28, 468, 641, 714, 768
RseI CAYNNNNRTG 1 cut(s) 274
SacII CCGCGG 1 cut(s) 8
SaqAI TTAA 3 cut(s) 240, 620, 702
SatI GCNGC 4 cut(s) 5, 147, 337, 434
Sau3AI GATC 1 cut(s) 514
ScaI AGTACT 1 cut(s) 715
SchI GAGTC 2 cut(s) 53, 252
SfcI CTRYAG 3 cut(s) 147, 262, 434
Sfr303I CCGCGG 1 cut(s) 8
SfuI TTCGAA 2 cut(s) 176, 493
SgrBI CCGCGG 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 274
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 7 cut(s) 69, 86, 288, 538, 616, 750, 763
SsiI CCGC 5 cut(s) 5, 7, 139, 336, 734
SspMI CTAG 2 cut(s) 342, 782
StyI CCWWGG 1 cut(s) 346
TaaI ACNGT 3 cut(s) 27, 266, 364
TaiI ACGT 1 cut(s) 473
TaqI TCGA 6 cut(s) 120, 176, 233, 493, 655, 740
TasI AATT 7 cut(s) 69, 86, 288, 538, 616, 750, 763
TatI WGTACW 3 cut(s) 640, 713, 767
TauI GCSGC 2 cut(s) 7, 339
TfiI GAWTC 3 cut(s) 106, 657, 803
Tru1I TTAA 3 cut(s) 240, 620, 702
Tru9I TTAA 3 cut(s) 240, 620, 702
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 2 cut(s) 146, 433
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 2 cut(s) 80, 539
TspGWI ACGGA 1 cut(s) 688
TspRI CASTG 1 cut(s) 271
Vha464I CTTAAG 1 cut(s) 239
XagI CCTNNNNNAGG 2 cut(s) 242, 494
XapI RAATTY 3 cut(s) 86, 288, 616
XcmI CCANNNNNNNNNTGG 1 cut(s) 568
XmnI GAANNNNTTC 1 cut(s) 421
XspI CTAG 2 cut(s) 342, 782
ZrmI AGTACT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.