RLG00000017868

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003271
Physical Location & Seq
Reverse (-)
22469124 .. 22472332
3209 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017868

Sequence Viewer

Length: 507 bp
ATGTTTCGAGAACAGACGTCGTCGTTGCCATTATCGGAGAGATCAGCGTCACTCAGCCTCGCCGTGTCTTTCACAGAAGAGGCTACCAAGTTCGGCGTTGTTGGCGTCACTCAGCCTCACCGTGTGGCCGCCGTCTCCGTCGCCATCAGGATCAGAACCTGCGCAGGCAAAATCAATCCAGAACAGAGTGTCCCCTACCCCGGCGACTTAGCGCCGACGACCACCGTTCAGCGTTCTGCCTCGAGGTGTTCGATGAATCACCGCGGCGGAGGAGGACTTGGGAGTGGAACCGCCGTCATCGTTGGTGGAGAAGTCGTCGACTTCGAATTCGGCGCTGTGATCCGTGGAGAAGTGGTGGCTGGAGGAGGCGAAGGAGCCTGGTCAACATCCCCAATCTCCGATTCACTTCCTTCAGGTTTAGCATTCTTTCGATCTGGATTAGGACCAGCCAGTCGTCAAGGTCGACTCCGATCTGGACCGAGTCGTCGAGATCGATTCCTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

17.51

Weight (kDa)

10.21

Isoelectric Point (pI)

51.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 450, 483
AatII GACGTC 1 cut(s) 20
AbsI CCTCGAGG 1 cut(s) 241
Acc16I TGCGCA 1 cut(s) 163
Acc36I ACCTGC 1 cut(s) 167
AccI GTMKAC 2 cut(s) 318, 463
AccII CGCG 1 cut(s) 264
AciI CCGC 5 cut(s) 129, 262, 264, 267, 291
AclWI GGATC 2 cut(s) 158, 334
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 326
AcuI CTGAAG 1 cut(s) 396
AcyI GRCGYC 2 cut(s) 17, 105
AdeI CACNNNGTG 1 cut(s) 124
AfiI CCNNNNNNNGG 1 cut(s) 200
AjnI CCWGG 1 cut(s) 377
AjuI GAANNNNNNNTTGG 2 cut(s) 385, 417
AloI GAACNNNNNNTCC 2 cut(s) 174, 206
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 2 cut(s) 158, 334
AlwNI CAGNNNCTG 1 cut(s) 159
Ama87I CYCGRG 1 cut(s) 241
AoxI GGCC 1 cut(s) 126
ApoI RAATTY 1 cut(s) 326
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AspLEI GCGC 3 cut(s) 164, 214, 335
AspS9I GGNCC 2 cut(s) 443, 476
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 2 cut(s) 110, 251
AsuII TTCGAA 1 cut(s) 324
AvaI CYCGRG 1 cut(s) 241
AvaII GGWCC 2 cut(s) 443, 476
BccI CCATC 1 cut(s) 152
BceAI ACGGC 3 cut(s) 47, 116, 278
BciT130I CCWGG 1 cut(s) 379
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 139
BfoI RGCGCY 2 cut(s) 215, 336
BfuAI ACCTGC 1 cut(s) 167
BisI GCNGC 2 cut(s) 129, 265
BlsI GCNGC 2 cut(s) 130, 266
Bme1390I CCNGG 2 cut(s) 201, 379
Bme18I GGWCC 2 cut(s) 443, 476
BmeT110I CYCGRG 1 cut(s) 241
BmgT120I GGNCC 2 cut(s) 443, 476
BmiI GGNNCC 2 cut(s) 289, 376
BmrFI CCNGG 2 cut(s) 201, 379
BpmI CTGGAG 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 201
Bsa29I ATCGAT 1 cut(s) 493
BsaHI GRCGYC 2 cut(s) 17, 105
BsaJI CCNNGG 3 cut(s) 199, 262, 343
BsaXI ACNNNNNCTCC 4 cut(s) 300, 330, 339, 369
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 450
BseBI CCWGG 1 cut(s) 379
BseCI ATCGAT 1 cut(s) 493
BseDI CCNNGG 3 cut(s) 199, 262, 343
BseGI GGATG 1 cut(s) 386
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMII CTCAG 2 cut(s) 67, 125
BseNI ACTGG 1 cut(s) 450
BseRI GAGGAG 2 cut(s) 285, 378
Bsh1236I CGCG 1 cut(s) 264
BshFI GGCC 1 cut(s) 128
BshVI ATCGAT 1 cut(s) 493
BsiHKCI CYCGRG 1 cut(s) 241
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 200
BsmAI GTCTC 1 cut(s) 139
BsmBI CGTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 176
BsmI GAATGC 1 cut(s) 422
BsnI GGCC 1 cut(s) 128
BsoBI CYCGRG 1 cut(s) 241
Bsp119I TTCGAA 1 cut(s) 324
Bsp143I GATC 6 cut(s) 41, 150, 339, 431, 470, 490
BspACI CCGC 5 cut(s) 129, 262, 264, 267, 291
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 2 cut(s) 66, 124
BspDI ATCGAT 1 cut(s) 493
BspFNI CGCG 1 cut(s) 264
BspLI GGNNCC 2 cut(s) 289, 376
BspMI ACCTGC 1 cut(s) 167
BspPI GGATC 2 cut(s) 158, 334
BspT104I TTCGAA 1 cut(s) 324
BsrI ACTGG 1 cut(s) 450
BssECI CCNNGG 3 cut(s) 199, 262, 343
BssMI GATC 6 cut(s) 41, 150, 339, 431, 470, 490
BssNI GRCGYC 2 cut(s) 17, 105
Bst2UI CCWGG 1 cut(s) 379
Bst4CI ACNGT 2 cut(s) 122, 226
Bst6I CTCTTC 1 cut(s) 72
BstACI GRCGYC 2 cut(s) 17, 105
BstBI TTCGAA 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 3 cut(s) 53, 111, 208
BstDSI CCRYGG 2 cut(s) 262, 343
BstF5I GGATG 1 cut(s) 386
BstFNI CGCG 1 cut(s) 264
BstH2I RGCGCY 2 cut(s) 215, 336
BstHHI GCGC 3 cut(s) 164, 214, 335
BstKTI GATC 6 cut(s) 44, 153, 342, 434, 473, 493
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 6 cut(s) 41, 150, 339, 431, 470, 490
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNI CCWGG 1 cut(s) 379
BstSCI CCNGG 2 cut(s) 199, 377
BstUI CGCG 1 cut(s) 264
Bsu15I ATCGAT 1 cut(s) 493
BsuRI GGCC 1 cut(s) 128
BsuTUI ATCGAT 1 cut(s) 493
BtgI CCRYGG 2 cut(s) 262, 343
BtsCI GGATG 1 cut(s) 386
BveI ACCTGC 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 166
CaiI CAGNNNCTG 1 cut(s) 159
CfoI GCGC 3 cut(s) 164, 214, 335
Cfr13I GGNCC 2 cut(s) 443, 476
Cfr42I CCGCGG 1 cut(s) 265
ClaI ATCGAT 1 cut(s) 493
CseI GACGC 2 cut(s) 36, 94
CviJI RGCY 7 cut(s) 57, 83, 115, 128, 359, 377, 449
CviKI_1 RGCY 7 cut(s) 57, 83, 115, 128, 359, 377, 449
DdeI CTNAG 3 cut(s) 53, 111, 208
DpnI GATC 6 cut(s) 43, 152, 341, 433, 472, 492
DpnII GATC 6 cut(s) 41, 150, 339, 431, 470, 490
DraIII CACNNNGTG 1 cut(s) 124
DrdI GACNNNNNNGTC 2 cut(s) 450, 483
DseDI GACNNNNNNGTC 2 cut(s) 450, 483
EaeI YGGCCR 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
EciI GGCGGA 1 cut(s) 282
Eco47I GGWCC 2 cut(s) 443, 476
Eco57I CTGAAG 1 cut(s) 396
Eco88I CYCGRG 1 cut(s) 241
EcoRI GAATTC 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 377
Esp3I CGTCTC 1 cut(s) 139
FaqI GGGAC 1 cut(s) 176
FblI GTMKAC 2 cut(s) 318, 463
Fnu4HI GCNGC 2 cut(s) 129, 265
FokI GGATG 1 cut(s) 373
Fsp4HI GCNGC 2 cut(s) 129, 265
FspI TGCGCA 1 cut(s) 163
GlaI GCGC 3 cut(s) 163, 213, 334
GluI GCNGC 2 cut(s) 129, 265
GsuI CTGGAG 1 cut(s) 381
HaeII RGCGCY 2 cut(s) 215, 336
HaeIII GGCC 1 cut(s) 128
HapII CCGG 1 cut(s) 201
HgaI GACGC 2 cut(s) 36, 94
HhaI GCGC 3 cut(s) 164, 214, 335
Hin1I GRCGYC 2 cut(s) 17, 105
Hin6I GCGC 3 cut(s) 162, 212, 333
HinP1I GCGC 3 cut(s) 162, 212, 333
HincII GTYRAC 3 cut(s) 319, 384, 464
HindII GTYRAC 3 cut(s) 319, 384, 464
HinfI GANTC 5 cut(s) 256, 401, 465, 481, 495
HpaII CCGG 1 cut(s) 201
HphI GGTGA 2 cut(s) 110, 251
Hpy166II GTNNAC 3 cut(s) 319, 384, 464
Hpy188I TCNGA 4 cut(s) 37, 155, 400, 470
Hpy188III TCNNGA 6 cut(s) 8, 148, 179, 435, 474, 488
Hpy8I GTNNAC 3 cut(s) 319, 384, 464
Hpy99I CGWCG 6 cut(s) 22, 25, 143, 220, 320, 489
HpyAV CCTTC 2 cut(s) 365, 420
HpyCH4III ACNGT 2 cut(s) 122, 226
HpyCH4IV ACGT 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 3 cut(s) 53, 111, 208
HpySE526I ACGT 1 cut(s) 17
Hsp92I GRCGYC 2 cut(s) 17, 105
HspAI GCGC 3 cut(s) 162, 212, 333
KspI CCGCGG 1 cut(s) 265
Kzo9I GATC 6 cut(s) 41, 150, 339, 431, 470, 490
LmnI GCTCC 1 cut(s) 374
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 2 cut(s) 48, 106
MalI GATC 6 cut(s) 43, 152, 341, 433, 472, 492
MboI GATC 6 cut(s) 41, 150, 339, 431, 470, 490
MboII GAAGA 1 cut(s) 89
MluCI AATT 1 cut(s) 326
MlyI GAGTC 2 cut(s) 459, 490
MnlI CCTC 9 cut(s) 68, 73, 126, 237, 250, 263, 266, 356, 359
MspA1I CMGCKG 1 cut(s) 264
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 2 cut(s) 201, 379
Mva1269I GAATGC 1 cut(s) 422
MvaI CCWGG 1 cut(s) 379
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 102
NciI CCSGG 1 cut(s) 201
NdeII GATC 6 cut(s) 41, 150, 339, 431, 470, 490
NlaIV GGNNCC 2 cut(s) 289, 376
NmuCI GTSAC 2 cut(s) 48, 106
NsbI TGCGCA 1 cut(s) 163
NspV TTCGAA 1 cut(s) 324
PaeR7I CTCGAG 1 cut(s) 241
PcsI WCGNNNNNNNCGW 4 cut(s) 248, 321, 460, 490
PctI GAATGC 1 cut(s) 422
PfeI GAWTC 3 cut(s) 256, 401, 495
PflFI GACNNNGTC 2 cut(s) 19, 480
PkrI GCNGC 2 cut(s) 130, 266
PleI GAGTC 2 cut(s) 459, 489
PpsI GAGTC 2 cut(s) 459, 489
Psp6I CCWGG 1 cut(s) 377
PspGI CCWGG 1 cut(s) 377
PspN4I GGNNCC 2 cut(s) 289, 376
PspPI GGNCC 2 cut(s) 443, 476
PspXI VCTCGAGB 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 159
PsyI GACNNNGTC 2 cut(s) 19, 480
SacII CCGCGG 1 cut(s) 265
SalI GTCGAC 2 cut(s) 317, 462
SatI GCNGC 2 cut(s) 129, 265
Sau3AI GATC 6 cut(s) 41, 150, 339, 431, 470, 490
Sau96I GGNCC 2 cut(s) 443, 476
SchI GAGTC 2 cut(s) 459, 490
ScrFI CCNGG 2 cut(s) 201, 379
SetI ASST 5 cut(s) 20, 161, 248, 418, 463
Sfr274I CTCGAG 1 cut(s) 241
Sfr303I CCGCGG 1 cut(s) 265
SfuI TTCGAA 1 cut(s) 324
SgrBI CCGCGG 1 cut(s) 265
SinI GGWCC 2 cut(s) 443, 476
SlaI CTCGAG 1 cut(s) 241
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 1 cut(s) 326
SsiI CCGC 5 cut(s) 129, 262, 264, 267, 291
StyD4I CCNGG 2 cut(s) 199, 377
TaaI ACNGT 2 cut(s) 122, 226
TaiI ACGT 1 cut(s) 20
TaqI TCGA 9 cut(s) 7, 242, 251, 318, 324, 430, 463, 487, 493
TaqII GACCGA 1 cut(s) 493
TasI AATT 1 cut(s) 326
TauI GCSGC 2 cut(s) 131, 267
TfiI GAWTC 3 cut(s) 256, 401, 495
TseFI GTSAC 2 cut(s) 48, 106
Tsp45I GTSAC 2 cut(s) 48, 106
TspDTI ATGAA 1 cut(s) 269
TspGWI ACGGA 2 cut(s) 127, 332
Tth111I GACNNNGTC 2 cut(s) 19, 480
VpaK11BI GGWCC 2 cut(s) 443, 476
XapI RAATTY 1 cut(s) 326
XhoI CTCGAG 1 cut(s) 241
XmiI GTMKAC 2 cut(s) 318, 463
ZraI GACGTC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.