Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003271

Physical Location & Seq

Genomic Coordinates Forward (+)

59319694 .. 59322769

Gene Structure 3076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035022

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAAGGATGACGATGGCCTTTTGATGATGACGGTCGCTGACACAAAGAAGGACAACACTGATTCGAGCCTAGTACTCAGGAAAGGCAGTGGTACCGCCTTGGCACATCCTCAGGAGATTGAGTTTGGGACTACAGAAATGCATTCCATGAATCAGATTAAGATGCGGGAGCCTAGAAATGGAAGAGAAGGCAAAAGCCAGTCCCGTCCAGATAAGATGAGATGGGAAGAAAACAGCCCAAGGGGGCGGAGAGATCGGCGTCACTCAGCCTCGCCGTGTGCTTCACAGAAGAGGCTACCAAGTTCGGCGTCGTCGGCGTCACTCAGCCTCGCCGTGTGCTTCACAGAAGAGGCTACCAAGTTCGGCGTCGTCGGCGTCACTCTACCTCACCGTGTCGCCGCCGTCTCCGTCGCCATCAGGATCCGAACCTGCGCAGGCAAAATCGACCCAAAACAGAGCATCTCCTACCCCGGCGACTTAGCGCCGACGACCATAGTACAGTGTTCTGCTTCGCTGTGCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

18.97

Weight (kDa)

9.54

Isoelectric Point (pI)

56.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003271)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g30380
rosa_laevigata	RLG00000006341 RLG00000009321 RLG00000010115 RLG00000017868 RLG00000023237 RLG00000031600 RLG00000034589 RLG00000035022
rosa_multiflora	Rmu_sc0004275.1_g000032
rosa_samantha	Rh1CG121600 Rh2AG438400 Rh2AG456300 Rh2AG500700 Rh2BG428400 Rh2CG425400 Rh2CG487000 Rh2DG438400 Rh4AG210400 Rh4BG351800 Rh4CG366400 Rh4CG388600 Rh4DG029100 Rh5BG047400 Rh5BG194000 Rh5BG468900 Rh5CG242000 Rh5CG491100 Rh5DG235000 Rh5DG382800 Rh6CG146900 Rh6DG428700 Rh6DG467600 Rh6DG519400 Rh7AG408000 Rh7CG188400
rosa_wichuraiana	Rw0G007150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	433
Acc36I	ACCTGC	1 cut(s)	437
Acc65I	GGTACC	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	92
AciI	CCGC	4 cut(s)	96, 166, 247, 399
AclWI	GGATC	2 cut(s)	415, 428
AcyI	GRCGYC	5 cut(s)	259, 308, 317, 366, 375
AfaI	GTAC	3 cut(s)	75, 94, 498
AfiI	CCNNNNNNNGG	1 cut(s)	179
Alw26I	GTCTC	1 cut(s)	409
AlwI	GGATC	2 cut(s)	415, 428
AoxI	GGCC	1 cut(s)	16
Asp718I	GGTACC	1 cut(s)	92
AspLEI	GCGC	2 cut(s)	434, 484
AsuC2I	CCSGG	1 cut(s)	471
AsuHPI	GGTGA	1 cut(s)	380
AxyI	CCTNAGG	1 cut(s)	111
BamHI	GGATCC	1 cut(s)	420
BanI	GGYRCC	1 cut(s)	92
BccI	CCATC	3 cut(s)	8, 216, 422
BceAI	ACGGC	3 cut(s)	259, 317, 386
BcnI	CCSGG	1 cut(s)	471
BcoDI	GTCTC	1 cut(s)	409
BfaI	CTAG	2 cut(s)	71, 174
BfmI	CTRYAG	1 cut(s)	132
BfoI	RGCGCY	1 cut(s)	485
BfuAI	ACCTGC	1 cut(s)	437
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
BmcAI	AGTACT	1 cut(s)	75
Bme1390I	CCNGG	1 cut(s)	471
BmiI	GGNNCC	3 cut(s)	94, 171, 422
BmrFI	CCNGG	1 cut(s)	471
BmsI	GCATC	2 cut(s)	153, 468
BpuMI	CCSGG	1 cut(s)	471
BsaHI	GRCGYC	5 cut(s)	259, 308, 317, 366, 375
BsaJI	CCNNGG	3 cut(s)	99, 239, 469
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse118I	RCCGGY	1 cut(s)	519
Bse1I	ACTGG	1 cut(s)	199
Bse21I	CCTNAGG	1 cut(s)	111
BseDI	CCNNGG	3 cut(s)	99, 239, 469
BseGI	GGATG	2 cut(s)	13, 106
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMII	CTCAG	4 cut(s)	91, 125, 279, 337
BseNI	ACTGG	1 cut(s)	199
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	18
BshNI	GGYRCC	1 cut(s)	92
BsiEI	CGRYCG	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	471, 520
BslFI	GGGAC	2 cut(s)	142, 187
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	409
BsmBI	CGTCTC	1 cut(s)	409
BsmFI	GGGAC	2 cut(s)	142, 187
BsmI	GAATGC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	18
Bsp143I	GATC	2 cut(s)	253, 420
BspACI	CCGC	4 cut(s)	96, 166, 247, 399
BspANI	GGCC	1 cut(s)	18
BspCNI	CTCAG	4 cut(s)	90, 124, 278, 336
BspLI	GGNNCC	3 cut(s)	94, 171, 422
BspMI	ACCTGC	1 cut(s)	437
BspPI	GGATC	2 cut(s)	415, 428
BspT107I	GGYRCC	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	519
BsrI	ACTGG	1 cut(s)	199
BssAI	RCCGGY	1 cut(s)	519
BssECI	CCNNGG	3 cut(s)	99, 239, 469
BssMI	GATC	2 cut(s)	253, 420
BssNI	GRCGYC	5 cut(s)	259, 308, 317, 366, 375
BssT1I	CCWWGG	2 cut(s)	99, 239
Bst4CI	ACNGT	3 cut(s)	34, 392, 501
Bst6I	CTCTTC	3 cut(s)	178, 284, 342
BstACI	GRCGYC	5 cut(s)	259, 308, 317, 366, 375
BstC8I	GCNNGC	1 cut(s)	436
BstDEI	CTNAG	5 cut(s)	77, 111, 265, 323, 478
BstF5I	GGATG	2 cut(s)	13, 106
BstH2I	RGCGCY	1 cut(s)	485
BstHHI	GCGC	2 cut(s)	434, 484
BstKTI	GATC	2 cut(s)	256, 423
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	2 cut(s)	253, 420
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 372
BstSCI	CCNGG	1 cut(s)	469
BstSFI	CTRYAG	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	420
BstYI	RGATCY	1 cut(s)	420
Bsu36I	CCTNAGG	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	13, 106
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	3 cut(s)	57, 94, 506
BveI	ACCTGC	1 cut(s)	437
Cac8I	GCNNGC	1 cut(s)	436
CfoI	GCGC	2 cut(s)	434, 484
Cfr10I	RCCGGY	1 cut(s)	519
CseI	GACGC	5 cut(s)	248, 297, 306, 355, 364
Csp6I	GTAC	3 cut(s)	74, 93, 497
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	9 cut(s)	18, 69, 172, 198, 237, 269, 295, 327, 353
CviKI_1	RGCY	9 cut(s)	18, 69, 172, 198, 237, 269, 295, 327, 353
CviQI	GTAC	3 cut(s)	74, 93, 497
DdeI	CTNAG	5 cut(s)	77, 111, 265, 323, 478
DpnI	GATC	2 cut(s)	255, 422
DpnII	GATC	2 cut(s)	253, 420
Eam1104I	CTCTTC	3 cut(s)	178, 284, 342
EarI	CTCTTC	3 cut(s)	178, 284, 342
EciI	GGCGGA	1 cut(s)	262
Eco130I	CCWWGG	2 cut(s)	99, 239
Eco81I	CCTNAGG	1 cut(s)	111
EcoT14I	CCWWGG	2 cut(s)	99, 239
EcoT22I	ATGCAT	1 cut(s)	144
ErhI	CCWWGG	2 cut(s)	99, 239
Esp3I	CGTCTC	1 cut(s)	409
FaeI	CATG	1 cut(s)	151
FaiI	YATR	2 cut(s)	149, 494
FaqI	GGGAC	2 cut(s)	142, 187
FatI	CATG	1 cut(s)	147
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	2 cut(s)	20, 93
Fsp4HI	GCNGC	1 cut(s)	399
FspBI	CTAG	2 cut(s)	71, 174
FspI	TGCGCA	1 cut(s)	433
GlaI	GCGC	2 cut(s)	433, 483
GluI	GCNGC	1 cut(s)	399
HaeII	RGCGCY	1 cut(s)	485
HaeIII	GGCC	1 cut(s)	18
HapII	CCGG	2 cut(s)	471, 520
HgaI	GACGC	5 cut(s)	248, 297, 306, 355, 364
HhaI	GCGC	2 cut(s)	434, 484
Hin1I	GRCGYC	5 cut(s)	259, 308, 317, 366, 375
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	2 cut(s)	432, 482
HinP1I	GCGC	2 cut(s)	432, 482
HinfI	GANTC	2 cut(s)	62, 151
HpaII	CCGG	2 cut(s)	471, 520
HphI	GGTGA	1 cut(s)	380
Hpy188I	TCNGA	2 cut(s)	156, 425
Hpy188III	TCNNGA	4 cut(s)	79, 113, 209, 418
Hpy99I	CGWCG	6 cut(s)	313, 316, 371, 374, 413, 490
HpyAV	CCTTC	2 cut(s)	43, 182
HpyCH4III	ACNGT	3 cut(s)	34, 392, 501
HpyCH4V	TGCA	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 372
HpyF3I	CTNAG	5 cut(s)	77, 111, 265, 323, 478
Hsp92I	GRCGYC	5 cut(s)	259, 308, 317, 366, 375
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	2 cut(s)	432, 482
KpnI	GGTACC	1 cut(s)	96
Kzo9I	GATC	2 cut(s)	253, 420
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	8 cut(s)	64, 98, 212, 222, 403, 420, 442, 484
LweI	GCATC	2 cut(s)	153, 468
MaeI	CTAG	2 cut(s)	71, 174
MaeIII	GTNAC	3 cut(s)	260, 318, 376
MalI	GATC	2 cut(s)	255, 422
MboI	GATC	2 cut(s)	253, 420
MboII	GAAGA	4 cut(s)	195, 239, 301, 359
MflI	RGATCY	1 cut(s)	420
MnlI	CCTC	6 cut(s)	120, 280, 285, 338, 343, 396
Mph1103I	ATGCAT	1 cut(s)	144
MseI	TTAA	1 cut(s)	159
MspI	CCGG	2 cut(s)	471, 520
MspR9I	CCNGG	1 cut(s)	471
Mva1269I	GAATGC	1 cut(s)	142
MwoI	GCNNNNNNNGC	2 cut(s)	314, 372
NciI	CCSGG	1 cut(s)	471
NdeII	GATC	2 cut(s)	253, 420
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	3 cut(s)	94, 171, 422
NmuCI	GTSAC	3 cut(s)	260, 318, 376
NsbI	TGCGCA	1 cut(s)	433
NsiI	ATGCAT	1 cut(s)	144
PctI	GAATGC	1 cut(s)	142
PfeI	GAWTC	2 cut(s)	62, 151
PkrI	GCNGC	1 cut(s)	400
PspN4I	GGNNCC	3 cut(s)	94, 171, 422
PsuI	RGATCY	1 cut(s)	420
RsaI	GTAC	3 cut(s)	75, 94, 498
RsaNI	GTAC	3 cut(s)	74, 93, 497
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	2 cut(s)	253, 420
ScaI	AGTACT	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	471
SetI	ASST	2 cut(s)	388, 431
SfaNI	GCATC	2 cut(s)	153, 468
SfcI	CTRYAG	1 cut(s)	132
SsiI	CCGC	4 cut(s)	96, 166, 247, 399
SspMI	CTAG	2 cut(s)	71, 174
StyD4I	CCNGG	1 cut(s)	469
StyI	CCWWGG	2 cut(s)	99, 239
TaaI	ACNGT	3 cut(s)	34, 392, 501
TaqI	TCGA	2 cut(s)	65, 444
TatI	WGTACW	2 cut(s)	73, 496
TauI	GCSGC	1 cut(s)	401
TfiI	GAWTC	2 cut(s)	62, 151
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	3 cut(s)	64, 94, 506
TseFI	GTSAC	3 cut(s)	260, 318, 376
Tsp45I	GTSAC	3 cut(s)	260, 318, 376
TspDTI	ATGAA	2 cut(s)	17, 164
TspGWI	ACGGA	1 cut(s)	397
TspRI	CASTG	3 cut(s)	64, 94, 506
XspI	CTAG	2 cut(s)	71, 174
ZrmI	AGTACT	1 cut(s)	75
Zsp2I	ATGCAT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.