Rh5CG242000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003271
Physical Location & Seq
Forward (+)
25125769 .. 25126023
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG242000.1

Sequence Viewer

Length: 255 bp
ATGAATCGCCTCGGCGGAGGAGCACTTGGGAGTGGAACCGCCGTCATCGTTGGCGGAGAAGTCGTCGACTTCGAATTCGGTGCTATGATCCGCGGAGAAGTGGTGGCTGGAGGAGGCGATGAAGCCTGGTCAACATCCCCAATCTCCGATTCACTTCCTTCAGGTTCAGCTTTCTTCCGATCTGGATTAGGACTAGCCAGTCGTCGAGGTCGACTCCGATCTGGACAGAGTCGTCAAGGTCGATTCCTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

8.63

Weight (kDa)

11.1

Isoelectric Point (pI)

52.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 198, 231
AccI GTMKAC 2 cut(s) 66, 211
AccII CGCG 1 cut(s) 93
AciI CCGC 5 cut(s) 15, 39, 54, 91, 93
AclWI GGATC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 144
AjnI CCWGG 1 cut(s) 125
AjuI GAANNNNNNNTTGG 2 cut(s) 133, 165
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
Alw21I GWGCWC 1 cut(s) 25
AlwI GGATC 1 cut(s) 82
ApoI RAATTY 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AsuII TTCGAA 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 25
BceAI ACGGC 1 cut(s) 26
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciT130I CCWGG 1 cut(s) 127
BfaI CTAG 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 127
BplI GAGNNNNNCTC 2 cut(s) 198, 230
BpmI CTGGAG 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 10, 91
BsaXI ACNNNNNCTCC 4 cut(s) 48, 78, 87, 117
Bse1I ACTGG 1 cut(s) 198
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 2 cut(s) 10, 91
BseGI GGATG 1 cut(s) 134
BseNI ACTGG 1 cut(s) 198
BseRI GAGGAG 2 cut(s) 33, 126
Bsh1236I CGCG 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 25
Bsp119I TTCGAA 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 3 cut(s) 87, 179, 218
BspACI CCGC 5 cut(s) 15, 39, 54, 91, 93
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 72
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 10, 91
BssMI GATC 3 cut(s) 87, 179, 218
Bst2UI CCWGG 1 cut(s) 127
BstBI TTCGAA 1 cut(s) 72
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 1 cut(s) 134
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 3 cut(s) 90, 182, 221
BstMBI GATC 3 cut(s) 87, 179, 218
BstNI CCWGG 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 125
BstUI CGCG 1 cut(s) 93
BtgI CCRYGG 1 cut(s) 91
BtgZI GCGATG 1 cut(s) 132
BtsCI GGATG 1 cut(s) 134
Cfr42I CCGCGG 1 cut(s) 94
CviJI RGCY 4 cut(s) 107, 125, 170, 197
CviKI_1 RGCY 4 cut(s) 107, 125, 170, 197
DpnI GATC 3 cut(s) 89, 181, 220
DpnII GATC 3 cut(s) 87, 179, 218
DrdI GACNNNNNNGTC 2 cut(s) 198, 231
DseDI GACNNNNNNGTC 2 cut(s) 198, 231
EciI GGCGGA 2 cut(s) 30, 69
Eco57I CTGAAG 1 cut(s) 144
EcoRI GAATTC 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 125
FaiI YATR 1 cut(s) 86
FblI GTMKAC 2 cut(s) 66, 211
FokI GGATG 1 cut(s) 121
FspBI CTAG 1 cut(s) 194
GsuI CTGGAG 1 cut(s) 129
HincII GTYRAC 3 cut(s) 67, 132, 212
HindII GTYRAC 3 cut(s) 67, 132, 212
HinfI GANTC 5 cut(s) 4, 149, 213, 229, 243
Hpy166II GTNNAC 3 cut(s) 67, 132, 212
Hpy188I TCNGA 3 cut(s) 148, 179, 218
Hpy188III TCNNGA 2 cut(s) 183, 222
Hpy8I GTNNAC 3 cut(s) 67, 132, 212
Hpy99I CGWCG 2 cut(s) 68, 207
HpyAV CCTTC 1 cut(s) 168
KspI CCGCGG 1 cut(s) 94
Kzo9I GATC 3 cut(s) 87, 179, 218
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 8 cut(s) 93, 112, 139, 147, 168, 207, 211, 235
MaeI CTAG 1 cut(s) 194
MalI GATC 3 cut(s) 89, 181, 220
MboI GATC 3 cut(s) 87, 179, 218
MboII GAAGA 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 1 cut(s) 74
MlyI GAGTC 2 cut(s) 207, 238
MnlI CCTC 5 cut(s) 11, 20, 104, 107, 200
MspA1I CMGCKG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 127
MvaI CCWGG 1 cut(s) 127
MvnI CGCG 1 cut(s) 93
NdeII GATC 3 cut(s) 87, 179, 218
NlaIV GGNNCC 1 cut(s) 37
NspV TTCGAA 1 cut(s) 72
PcsI WCGNNNNNNNCGW 3 cut(s) 69, 208, 238
PfeI GAWTC 3 cut(s) 4, 149, 243
PflFI GACNNNGTC 1 cut(s) 228
PleI GAGTC 2 cut(s) 207, 237
PpsI GAGTC 2 cut(s) 207, 237
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 37
PsyI GACNNNGTC 1 cut(s) 228
SacII CCGCGG 1 cut(s) 94
SalI GTCGAC 2 cut(s) 65, 210
Sau3AI GATC 3 cut(s) 87, 179, 218
SchI GAGTC 2 cut(s) 207, 238
ScrFI CCNGG 1 cut(s) 127
SduI GDGCHC 1 cut(s) 25
SetI ASST 4 cut(s) 166, 172, 211, 241
Sfr303I CCGCGG 1 cut(s) 94
SfuI TTCGAA 1 cut(s) 72
SgrBI CCGCGG 1 cut(s) 94
Sse9I AATT 1 cut(s) 74
SsiI CCGC 5 cut(s) 15, 39, 54, 91, 93
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 125
TaqI TCGA 5 cut(s) 66, 72, 205, 211, 241
TasI AATT 1 cut(s) 74
TfiI GAWTC 3 cut(s) 4, 149, 243
TspDTI ATGAA 2 cut(s) 17, 135
Tth111I GACNNNGTC 1 cut(s) 228
XapI RAATTY 1 cut(s) 74
XmiI GTMKAC 2 cut(s) 66, 211
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.