Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004570

Physical Location & Seq

Genomic Coordinates Reverse (-)

14299523 .. 14300404

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007178

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGTGCCCGCCCCGCAGCCGGCGACGACCCCGCCCATGAAGGCCACTTCAAATGGATCATTTCAGGGCGAAAATCCATTTGATTACACTCTTCCCTTACTCATCGTCCAGATCATCTTGGTCGTGGTGTTCACCAGGTTTCTTGCATATCTTCTAAAACCTCTTCGGCAACCCCGAGTCATAGCCGAAGTTATAGTAAGAGCCTCTCCTTTTCCATTCATTAAACAAACTCATTTTTTCTTTTTCATCAACATTTCTAGCACAAAGTGGCGGATGTCTGCTGGGGTCCTCCGCATTCGGGAGGAGCAAGACCTTTCTACACACGATTTTCCCGCCAAAAGACATGGCCATGCTAGATACGGTAGCCAACGTCGGGCCCTACTTCTTCCTCTTCCTCTTCCTCGTCACACCAGAAAGAAGTCCCTCGGCATCGCCCTCTGCGGGATCACCCTCCCCTTCGTCCTCGGCATCGGCACCTCCGAAGCCCTGCCCGCCACTGTCTCGAAAGGTGTGAAACAAGGCCTCTTCCTCGTCTTCAACGGCGTCGCCCTGTCCTTCACTGCCTTCCCCGTCCTGGCCGCATCCTCGCCGAGCTCAAACTCCTCACCACCGATGTCGGTCGCATCGCTATGTCCTCCGCCGCCTGGATCCTTCTCGCTCTCACTATCGCCCTCACCGGCAACAACACCTCGCCGCTTGTCTCCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0031410 GO:0031982 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

237

Amino Acids

25.58

Weight (kDa)

11.14

Isoelectric Point (pI)

65.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17630 AT3G17630
fragaria_vesca	FvH4_4g21880
malus_domestica	MD13G1136000.v1.1 MD16G1131400.v1.1
prunus_persica	Prupe.1G209400_v2.0.a1
pyrus_communis	pycom16g11580
rosa_chinensis	RchiOBHm_Chr3g0483861
rosa_laevigata	RLG00000007178 RLG00000023257
rosa_multiflora	Rmu_co8183874.1_g000001 Rmu_co8462775.1_g000001 Rmu_sc0004940.1_g000012 Rmu_sc0005901.1_g000001 Rmu_sc0009599.1_g000012
rosa_roxburghii	Rroxscaffold_5G00369850 Rroxscaffold_6G00398090
rosa_rugosa	Rorug03G0208200.1 Rorug03G0208300 Rorug04G0222700 Rorug04G0222800
rosa_samantha	Rh3AG257000 Rh3BG293400 Rh3CG291700 Rh3DG286700 Rh4AG279900 Rh4AG280100 Rh4BG285300 Rh4BG285500 Rh4CG300900
rosa_wichuraiana	Rw3G023230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 473
AclWI	GGATC	4 cut(s)	64, 452, 642, 655
AcoI	YGGCCR	2 cut(s)	346, 576
AcyI	GRCGYC	1 cut(s)	543
AdeI	CACNNNGTG	1 cut(s)	267
AfiI	CCNNNNNNNGG	6 cut(s)	19, 298, 373, 441, 574, 644
AgsI	TTSAA	2 cut(s)	51, 538
AjnI	CCWGG	3 cut(s)	134, 573, 643
AluBI	AGCT	1 cut(s)	594
AluI	AGCT	1 cut(s)	594
Alw21I	GWGCWC	1 cut(s)	596
Alw26I	GTCTC	2 cut(s)	505, 705
AlwI	GGATC	4 cut(s)	64, 452, 642, 655
Ama87I	CYCGRG	1 cut(s)	174
AoxI	GGCC	5 cut(s)	42, 346, 375, 520, 576
ApaI	GGGCCC	1 cut(s)	379
ApeKI	GCWGC	1 cut(s)	16
AspS9I	GGNCC	3 cut(s)	286, 375, 376
AsuHPI	GGTGA	4 cut(s)	124, 439, 597, 666
AvaI	CYCGRG	1 cut(s)	174
AvaII	GGWCC	1 cut(s)	286
BaeGI	GKGCMC	2 cut(s)	9, 379
BalI	TGGCCA	1 cut(s)	348
BamHI	GGATCC	1 cut(s)	647
BanI	GGYRCC	2 cut(s)	4, 473
BanII	GRGCYC	2 cut(s)	379, 596
BbsI	GAAGAC	1 cut(s)	526
Bbv12I	GWGCWC	1 cut(s)	596
BbvI	GCAGC	1 cut(s)	28
BceAI	ACGGC	1 cut(s)	556
BciT130I	CCWGG	3 cut(s)	136, 575, 645
BcoDI	GTCTC	2 cut(s)	505, 705
BfaI	CTAG	2 cut(s)	258, 354
BisI	GCNGC	4 cut(s)	17, 579, 641, 694
BlsI	GCNGC	4 cut(s)	18, 580, 642, 695
Bme1390I	CCNGG	3 cut(s)	136, 575, 645
Bme18I	GGWCC	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	174
BmgT120I	GGNCC	3 cut(s)	286, 375, 376
BmiI	GGNNCC	5 cut(s)	6, 287, 377, 475, 649
BmrFI	CCNGG	3 cut(s)	136, 575, 645
BmsI	GCATC	4 cut(s)	438, 477, 590, 632
BpiI	GAAGAC	1 cut(s)	526
BsaHI	GRCGYC	1 cut(s)	543
BsaJI	CCNNGG	2 cut(s)	424, 463
Bsc4I	CCNNNNNNNGG	6 cut(s)	19, 298, 373, 441, 574, 644
Bse118I	RCCGGY	2 cut(s)	19, 676
BseBI	CCWGG	3 cut(s)	136, 575, 645
BseDI	CCNNGG	2 cut(s)	424, 463
BseGI	GGATG	2 cut(s)	279, 581
BseLI	CCNNNNNNNGG	6 cut(s)	19, 298, 373, 441, 574, 644
BseRI	GAGGAG	2 cut(s)	317, 592
BseSI	GKGCMC	2 cut(s)	9, 379
BseXI	GCAGC	1 cut(s)	28
BseYI	CCCAGC	1 cut(s)	281
Bsh1285I	CGRYCG	1 cut(s)	621
BshFI	GGCC	5 cut(s)	44, 348, 377, 522, 578
BshNI	GGYRCC	2 cut(s)	4, 473
BsiEI	CGRYCG	1 cut(s)	621
BsiHKAI	GWGCWC	1 cut(s)	596
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	20, 677
BslFI	GGGAC	1 cut(s)	406
BslI	CCNNNNNNNGG	6 cut(s)	19, 298, 373, 441, 574, 644
BsmAI	GTCTC	2 cut(s)	505, 705
BsmFI	GGGAC	1 cut(s)	406
BsmI	GAATGC	1 cut(s)	294
BsnI	GGCC	5 cut(s)	44, 348, 377, 522, 578
BsoBI	CYCGRG	1 cut(s)	174
Bsp120I	GGGCCC	1 cut(s)	375
Bsp1286I	GDGCHC	3 cut(s)	9, 379, 596
Bsp143I	GATC	4 cut(s)	56, 111, 444, 647
BspANI	GGCC	5 cut(s)	44, 348, 377, 522, 578
BspLI	GGNNCC	5 cut(s)	6, 287, 377, 475, 649
BspPI	GGATC	4 cut(s)	64, 452, 642, 655
BspT107I	GGYRCC	2 cut(s)	4, 473
BsrFI	RCCGGY	2 cut(s)	19, 676
BssAI	RCCGGY	2 cut(s)	19, 676
BssECI	CCNNGG	2 cut(s)	424, 463
BssMI	GATC	4 cut(s)	56, 111, 444, 647
BssNI	GRCGYC	1 cut(s)	543
Bst2UI	CCWGG	3 cut(s)	136, 575, 645
Bst4CI	ACNGT	2 cut(s)	362, 499
Bst6I	CTCTTC	5 cut(s)	96, 168, 396, 402, 530
BstACI	GRCGYC	1 cut(s)	543
BstC8I	GCNNGC	3 cut(s)	9, 21, 492
BstDEI	CTNAG	1 cut(s)	708
BstF5I	GGATG	2 cut(s)	279, 581
BstKTI	GATC	4 cut(s)	59, 114, 447, 650
BstMAI	GTCTC	2 cut(s)	505, 705
BstMBI	GATC	4 cut(s)	56, 111, 444, 647
BstMCI	CGRYCG	1 cut(s)	621
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 491
BstNI	CCWGG	3 cut(s)	136, 575, 645
BstSCI	CCNGG	3 cut(s)	134, 573, 643
BstSLI	GKGCMC	2 cut(s)	9, 379
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	526
BstX2I	RGATCY	1 cut(s)	647
BstYI	RGATCY	1 cut(s)	647
BsuRI	GGCC	5 cut(s)	44, 348, 377, 522, 578
BtgZI	GCGATG	2 cut(s)	415, 609
BtsCI	GGATG	2 cut(s)	279, 581
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	2 cut(s)	495, 558
Cac8I	GCNNGC	3 cut(s)	9, 21, 492
Cfr10I	RCCGGY	2 cut(s)	19, 676
Cfr13I	GGNCC	3 cut(s)	286, 375, 376
CseI	GACGC	1 cut(s)	532
CsiI	ACCWGGT	1 cut(s)	134
CviAII	CATG	3 cut(s)	37, 344, 350
DdeI	CTNAG	1 cut(s)	708
DpnI	GATC	4 cut(s)	58, 113, 446, 649
DpnII	GATC	4 cut(s)	56, 111, 444, 647
DraIII	CACNNNGTG	1 cut(s)	267
EaeI	YGGCCR	2 cut(s)	346, 576
Eam1104I	CTCTTC	5 cut(s)	96, 168, 396, 402, 530
EarI	CTCTTC	5 cut(s)	96, 168, 396, 402, 530
EciI	GGCGGA	2 cut(s)	286, 627
Ecl136II	GAGCTC	1 cut(s)	594
Eco147I	AGGCCT	1 cut(s)	522
Eco24I	GRGCYC	2 cut(s)	379, 596
Eco47I	GGWCC	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	594
Eco88I	CYCGRG	1 cut(s)	174
EcoICRI	GAGCTC	1 cut(s)	594
EcoO109I	RGGNCCY	2 cut(s)	286, 376
EcoRII	CCWGG	3 cut(s)	134, 573, 643
EcoT38I	GRGCYC	2 cut(s)	379, 596
FaeI	CATG	3 cut(s)	40, 347, 353
FaiI	YATR	7 cut(s)	38, 148, 182, 194, 345, 351, 631
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	3 cut(s)	36, 343, 349
FauI	CCCGC	6 cut(s)	16, 21, 39, 340, 434, 499
Fnu4HI	GCNGC	4 cut(s)	17, 579, 641, 694
FokI	GGATG	2 cut(s)	286, 568
FriOI	GRGCYC	2 cut(s)	379, 596
Fsp4HI	GCNGC	4 cut(s)	17, 579, 641, 694
FspBI	CTAG	2 cut(s)	258, 354
GluI	GCNGC	4 cut(s)	17, 579, 641, 694
GsaI	CCCAGC	1 cut(s)	285
HaeIII	GGCC	5 cut(s)	44, 348, 377, 522, 578
HapII	CCGG	2 cut(s)	20, 677
HgaI	GACGC	1 cut(s)	532
Hin1I	GRCGYC	1 cut(s)	543
Hin1II	CATG	3 cut(s)	40, 347, 353
HinfI	GANTC	1 cut(s)	177
HpaII	CCGG	2 cut(s)	20, 677
HphI	GGTGA	4 cut(s)	124, 439, 597, 666
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	481
Hpy188III	TCNNGA	3 cut(s)	109, 299, 502
Hpy8I	GTNNAC	1 cut(s)	132
Hpy99I	CGWCG	3 cut(s)	28, 375, 548
HpyAV	CCTTC	5 cut(s)	34, 466, 565, 574, 661
HpyCH4III	ACNGT	2 cut(s)	362, 499
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 491
HpyF3I	CTNAG	1 cut(s)	708
HpySE526I	ACGT	1 cut(s)	370
Hsp92I	GRCGYC	1 cut(s)	543
Hsp92II	CATG	3 cut(s)	40, 347, 353
KroI	GCCGGC	1 cut(s)	19
KroNI	GCCGGC	1 cut(s)	21
Kzo9I	GATC	4 cut(s)	56, 111, 444, 647
LmnI	GCTCC	1 cut(s)	304
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	4 cut(s)	438, 477, 590, 632
MabI	ACCWGGT	1 cut(s)	134
MaeI	CTAG	2 cut(s)	258, 354
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	4 cut(s)	58, 113, 446, 649
MboI	GATC	4 cut(s)	56, 111, 444, 647
MboII	GAAGA	8 cut(s)	83, 143, 155, 377, 383, 389, 517, 526
MflI	RGATCY	1 cut(s)	647
MhlI	GDGCHC	3 cut(s)	9, 379, 596
MlsI	TGGCCA	1 cut(s)	348
MluNI	TGGCCA	1 cut(s)	348
MlyI	GAGTC	1 cut(s)	186
Mox20I	TGGCCA	1 cut(s)	348
MroNI	GCCGGC	1 cut(s)	19
MscI	TGGCCA	1 cut(s)	348
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	2 cut(s)	348, 628
Msp20I	TGGCCA	1 cut(s)	348
MspI	CCGG	2 cut(s)	20, 677
MspR9I	CCNGG	3 cut(s)	136, 575, 645
Mva1269I	GAATGC	1 cut(s)	294
MvaI	CCWGG	3 cut(s)	136, 575, 645
MwoI	GCNNNNNNNGC	2 cut(s)	13, 491
NaeI	GCCGGC	1 cut(s)	21
NdeII	GATC	4 cut(s)	56, 111, 444, 647
NgoMIV	GCCGGC	1 cut(s)	19
NlaIII	CATG	3 cut(s)	40, 347, 353
NlaIV	GGNNCC	5 cut(s)	6, 287, 377, 475, 649
NmeAIII	GCCGAG	3 cut(s)	405, 444, 615
NmuCI	GTSAC	1 cut(s)	404
PceI	AGGCCT	1 cut(s)	522
PcsI	WCGNNNNNNNCGW	2 cut(s)	172, 477
PctI	GAATGC	1 cut(s)	294
PdiI	GCCGGC	1 cut(s)	21
PkrI	GCNGC	4 cut(s)	18, 580, 642, 695
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PpuMI	RGGWCCY	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	596
Psp5II	RGGWCCY	1 cut(s)	286
Psp6I	CCWGG	3 cut(s)	134, 573, 643
PspFI	CCCAGC	1 cut(s)	281
PspGI	CCWGG	3 cut(s)	134, 573, 643
PspN4I	GGNNCC	5 cut(s)	6, 287, 377, 475, 649
PspOMI	GGGCCC	1 cut(s)	375
PspPI	GGNCC	3 cut(s)	286, 375, 376
PspPPI	RGGWCCY	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	647
RseI	CAYNNNNRTG	2 cut(s)	348, 628
SacI	GAGCTC	1 cut(s)	596
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	4 cut(s)	17, 579, 641, 694
Sau3AI	GATC	4 cut(s)	56, 111, 444, 647
Sau96I	GGNCC	3 cut(s)	286, 375, 376
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	3 cut(s)	136, 575, 645
SduI	GDGCHC	3 cut(s)	9, 379, 596
SetI	ASST	8 cut(s)	140, 163, 315, 373, 479, 511, 596, 691
SexAI	ACCWGGT	1 cut(s)	134
SfaNI	GCATC	4 cut(s)	438, 477, 590, 632
SinI	GGWCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	2 cut(s)	348, 628
SseBI	AGGCCT	1 cut(s)	522
SspMI	CTAG	2 cut(s)	258, 354
SstI	GAGCTC	1 cut(s)	596
StuI	AGGCCT	1 cut(s)	522
StyD4I	CCNGG	3 cut(s)	134, 573, 643
TaaI	ACNGT	2 cut(s)	362, 499
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	1 cut(s)	503
TaqII	GACCGA	1 cut(s)	607
TauI	GCSGC	3 cut(s)	581, 643, 696
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	2 cut(s)	502, 565
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	3 cut(s)	53, 208, 235
TspRI	CASTG	2 cut(s)	502, 565
VpaK11BI	GGWCC	1 cut(s)	286
XspI	CTAG	2 cut(s)	258, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.