Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8462775.1

Orthogroup ID

OG0004570

Physical Location & Seq

Genomic Coordinates Reverse (-)

511 .. 1710

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8462775.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

atggcgttgttcaccaccttcatcaccacaccactagtgatggcagtgtacaaaccagcaagaaagggagccccttacaaactacgcaccatttttcgcaaaagcccagacacagaacttcgaatattggcatgcttccacaccacccgcaacatccccaccattatcaacctcatcgagtcgtctcgcggcacccacaagcgcggacgactcaccatctacgccatgcacctcatggagctctcggagcggtcctctgcaatctccatggtccacaaagcccgctataatggcctcccattttggaacaagaagagtgatggaaatgaccaaatggttattgcttttgaggcctacgagcagctcagcagcgtcaagattcggccagccaccgccatctcttctttaaacgacatgcacgaggacatatgcgcctgcgcgcaccaaaaaactgtggcaatgattttgttgccgtttcacaagcatcagaagctggacggcaccatggagtcggtgggacactcatttcaagtggtgaacgagcgtgtgctccgacatgcgccttgttcggttgggattctagttgatagaggactcggtggcaccacgcaggtctcagctagcgaagtgtcgtatacggcggtagtggcgttcttcggaggaagagatgaccgcgaggcactggcttatggtatgagactggctgaacatcctgggattgcgttgactgtttttagattcgttgctccacaagggaagacattgagatttggagcgaaattagttgggataacagctgacaacaagaaaatactgaaagaagaagatagtagccaagagaatgaagaggacgagaagttcttggaggagtacaagaatgtaagaagtagcaataaggaaaaggaagagtccatgttttacgaggagaaggtggtggacagcaaaggggagatcgcggtggcattaaagactctgagcaagcacaacttgtttatagtagggagaatgtcgtcgactgtcccgttggtagagtcgagtgactgtgcagagcttgggccaatcggaagcttcttagcctcgtcagacttctcttccacagcttcagttgtggtgattcaacaatatgatgctacagcgtcgcggccgcttgtggtggaggaagctgactatgagttgccggagtcgtcgtctatggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0031410 GO:0031982 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

399

Amino Acids

44.24

Weight (kDa)

6.65

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17630 AT3G17630
fragaria_vesca	FvH4_4g21880
malus_domestica	MD13G1136000.v1.1 MD16G1131400.v1.1
prunus_persica	Prupe.1G209400_v2.0.a1
pyrus_communis	pycom16g11580
rosa_chinensis	RchiOBHm_Chr3g0483861
rosa_laevigata	RLG00000007178 RLG00000023257
rosa_multiflora	Rmu_co8183874.1_g000001 Rmu_co8462775.1_g000001 Rmu_sc0004940.1_g000012 Rmu_sc0005901.1_g000001 Rmu_sc0009599.1_g000012
rosa_roxburghii	Rroxscaffold_5G00369850 Rroxscaffold_6G00398090
rosa_rugosa	Rorug03G0208200.1 Rorug03G0208300 Rorug04G0222700 Rorug04G0222800
rosa_samantha	Rh3AG257000 Rh3BG293400 Rh3CG291700 Rh3DG286700 Rh4AG279900 Rh4AG280100 Rh4BG285300 Rh4BG285500 Rh4CG300900
rosa_wichuraiana	Rw3G023230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	601
AccB1I	GGYRCC	3 cut(s)	191, 500, 602
AccBSI	CCGCTC	1 cut(s)	250
AccI	GTMKAC	2 cut(s)	635, 1013
AccII	CGCG	6 cut(s)	189, 204, 440, 675, 956, 1141
AcoI	YGGCCR	2 cut(s)	383, 1142
AcuI	CTGAAG	1 cut(s)	1086
AfaI	GTAC	2 cut(s)	50, 872
AgsI	TTSAA	2 cut(s)	530, 1118
AhlI	ACTAGT	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	712
AloI	GAACNNNNNNTCC	2 cut(s)	842, 874
AluBI	AGCT	9 cut(s)	241, 364, 493, 620, 797, 1051, 1068, 1100, 1163
AluI	AGCT	9 cut(s)	241, 364, 493, 620, 797, 1051, 1068, 1100, 1163
Alw21I	GWGCWC	2 cut(s)	243, 552
Alw26I	GTCTC	3 cut(s)	189, 619, 691
AlwNI	CAGNNNCTG	1 cut(s)	493
AoxI	GGCC	5 cut(s)	292, 351, 383, 1055, 1142
ApeKI	GCWGC	2 cut(s)	361, 369
AspLEI	GCGC	5 cut(s)	204, 434, 440, 442, 562
AspS9I	GGNCC	3 cut(s)	252, 271, 1055
AsuHPI	GGTGA	5 cut(s)	4, 16, 205, 547, 1123
AsuII	TTCGAA	1 cut(s)	121
AsuNHI	GCTAGC	1 cut(s)	620
AvaII	GGWCC	2 cut(s)	252, 271
BanI	GGYRCC	3 cut(s)	191, 500, 602
BanII	GRGCYC	2 cut(s)	73, 243
BauI	CACGAG	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	764
Bbv12I	GWGCWC	2 cut(s)	243, 552
BbvI	GCAGC	2 cut(s)	373, 381
BccI	CCATC	4 cut(s)	34, 224, 314, 404
BceAI	ACGGC	3 cut(s)	457, 514, 654
BciT130I	CCWGG	1 cut(s)	714
BcoDI	GTCTC	3 cut(s)	189, 619, 691
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	3 cut(s)	35, 581, 621
BfmI	CTRYAG	1 cut(s)	1131
BfuAI	ACCTGC	1 cut(s)	601
BisI	GCNGC	5 cut(s)	190, 362, 370, 1142, 1145
BlpI	GCTNAGC	1 cut(s)	365
BlsI	GCNGC	5 cut(s)	191, 363, 371, 1143, 1146
Bme1390I	CCNGG	1 cut(s)	714
Bme18I	GGWCC	2 cut(s)	252, 271
BmgT120I	GGNCC	3 cut(s)	252, 271, 1055
BmiI	GGNNCC	4 cut(s)	70, 193, 502, 604
BmrFI	CCNGG	1 cut(s)	714
BmsI	GCATC	2 cut(s)	493, 1117
BmtI	GCTAGC	1 cut(s)	624
BpiI	GAAGAC	1 cut(s)	764
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
Bpu1102I	GCTNAGC	1 cut(s)	365
Bpu14I	TTCGAA	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	619
BsaJI	CCNNGG	3 cut(s)	267, 504, 713
BsaXI	ACNNNNNCTCC	1 cut(s)	1172
Bse1I	ACTGG	2 cut(s)	687, 705
Bse3DI	GCAATG	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	714
BseDI	CCNNGG	3 cut(s)	267, 504, 713
BseGI	GGATG	2 cut(s)	153, 709
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	3 cut(s)	379, 630, 965
BseNI	ACTGG	2 cut(s)	687, 705
BsePI	GCGCGC	1 cut(s)	438
BseRI	GAGGAG	2 cut(s)	881, 938
BseX3I	CGGCCG	1 cut(s)	1142
BseXI	GCAGC	2 cut(s)	373, 381
BsgI	GTGCAG	1 cut(s)	1065
Bsh1236I	CGCG	6 cut(s)	189, 204, 440, 675, 956, 1141
Bsh1285I	CGRYCG	1 cut(s)	1145
BshFI	GGCC	5 cut(s)	294, 353, 385, 1057, 1144
BshNI	GGYRCC	3 cut(s)	191, 500, 602
BsiEI	CGRYCG	1 cut(s)	1145
BsiHKAI	GWGCWC	2 cut(s)	243, 552
BsiSI	CCGG	1 cut(s)	1178
BslFI	GGGAC	2 cut(s)	531, 1004
BsmAI	GTCTC	3 cut(s)	189, 619, 691
BsmBI	CGTCTC	1 cut(s)	189
BsmFI	GGGAC	2 cut(s)	531, 1004
BsnI	GGCC	5 cut(s)	294, 353, 385, 1057, 1144
Bso31I	GGTCTC	1 cut(s)	619
Bsp119I	TTCGAA	1 cut(s)	121
Bsp1286I	GDGCHC	3 cut(s)	73, 243, 552
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	951
Bsp1720I	GCTNAGC	1 cut(s)	365
Bsp19I	CCATGG	2 cut(s)	267, 504
BspANI	GGCC	5 cut(s)	294, 353, 385, 1057, 1144
BspCNI	CTCAG	3 cut(s)	378, 629, 966
BspFNI	CGCG	6 cut(s)	189, 204, 440, 675, 956, 1141
BspLI	GGNNCC	4 cut(s)	70, 193, 502, 604
BspMI	ACCTGC	1 cut(s)	601
BspOI	GCTAGC	1 cut(s)	624
BspT104I	TTCGAA	1 cut(s)	121
BspT107I	GGYRCC	3 cut(s)	191, 500, 602
BspTNI	GGTCTC	1 cut(s)	619
BsrBI	CCGCTC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	465
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	687, 705
BssECI	CCNNGG	3 cut(s)	267, 504, 713
BssHII	GCGCGC	1 cut(s)	438
BssMI	GATC	1 cut(s)	951
BssNAI	GTATAC	1 cut(s)	636
BssSI	CACGAG	1 cut(s)	419
BssT1I	CCWWGG	2 cut(s)	267, 504
Bst1107I	GTATAC	1 cut(s)	636
Bst2BI	CACGAG	1 cut(s)	419
Bst2UI	CCWGG	1 cut(s)	714
Bst4CI	ACNGT	4 cut(s)	454, 730, 1018, 1043
Bst6I	CTCTTC	6 cut(s)	308, 406, 658, 840, 900, 1096
BstAUI	TGTACA	1 cut(s)	48
BstBI	TTCGAA	1 cut(s)	121
BstC8I	GCNNGC	7 cut(s)	133, 283, 387, 436, 440, 622, 980
BstDEI	CTNAG	4 cut(s)	365, 616, 974, 1072
BstDSI	CCRYGG	2 cut(s)	267, 504
BstF5I	GGATG	2 cut(s)	153, 709
BstFNI	CGCG	6 cut(s)	189, 204, 440, 675, 956, 1141
BstHHI	GCGC	5 cut(s)	204, 434, 440, 442, 562
BstKTI	GATC	1 cut(s)	954
BstMAI	GTCTC	3 cut(s)	189, 619, 691
BstMBI	GATC	1 cut(s)	951
BstMCI	CGRYCG	1 cut(s)	1145
BstMWI	GCNNNNNNNGC	5 cut(s)	247, 291, 350, 490, 647
BstNI	CCWGG	1 cut(s)	714
BstNSI	RCATGY	3 cut(s)	135, 418, 560
BstSCI	CCNGG	1 cut(s)	712
BstSFI	CTRYAG	1 cut(s)	1131
BstUI	CGCG	6 cut(s)	189, 204, 440, 675, 956, 1141
BstV1I	GCAGC	2 cut(s)	373, 381
BstV2I	GAAGAC	1 cut(s)	764
BstZ17I	GTATAC	1 cut(s)	636
BstZI	CGGCCG	1 cut(s)	1142
BsuRI	GGCC	5 cut(s)	294, 353, 385, 1057, 1144
BtgI	CCRYGG	2 cut(s)	267, 504
BtsCI	GGATG	2 cut(s)	153, 709
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	51, 680
BveI	ACCTGC	1 cut(s)	601
Cac8I	GCNNGC	7 cut(s)	133, 283, 387, 436, 440, 622, 980
CaiI	CAGNNNCTG	1 cut(s)	493
CciNI	GCGGCCGC	1 cut(s)	1142
CfoI	GCGC	5 cut(s)	204, 434, 440, 442, 562
Cfr13I	GGNCC	3 cut(s)	252, 271, 1055
CseI	GACGC	2 cut(s)	361, 1125
Csp6I	GTAC	2 cut(s)	49, 871
CviAII	CATG	8 cut(s)	132, 226, 235, 268, 415, 505, 557, 913
CviQI	GTAC	2 cut(s)	49, 871
DdeI	CTNAG	4 cut(s)	365, 616, 974, 1072
DpnI	GATC	1 cut(s)	953
DpnII	GATC	1 cut(s)	951
DraI	TTTAAA	1 cut(s)	408
EaeI	YGGCCR	2 cut(s)	383, 1142
EagI	CGGCCG	1 cut(s)	1142
Eam1104I	CTCTTC	6 cut(s)	308, 406, 658, 840, 900, 1096
EarI	CTCTTC	6 cut(s)	308, 406, 658, 840, 900, 1096
Ecl136II	GAGCTC	1 cut(s)	241
EclXI	CGGCCG	1 cut(s)	1142
Eco130I	CCWWGG	2 cut(s)	267, 504
Eco147I	AGGCCT	1 cut(s)	353
Eco24I	GRGCYC	2 cut(s)	73, 243
Eco31I	GGTCTC	1 cut(s)	619
Eco47I	GGWCC	2 cut(s)	252, 271
Eco52I	CGGCCG	1 cut(s)	1142
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	1086
EcoICRI	GAGCTC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	712
EcoT14I	CCWWGG	2 cut(s)	267, 504
EcoT38I	GRGCYC	2 cut(s)	73, 243
ErhI	CCWWGG	2 cut(s)	267, 504
Esp3I	CGTCTC	1 cut(s)	189
FaeI	CATG	8 cut(s)	135, 229, 238, 271, 418, 508, 560, 916
FalI	AAGNNNNNCTT	2 cut(s)	971, 1003
FaqI	GGGAC	2 cut(s)	531, 1004
FatI	CATG	8 cut(s)	131, 225, 234, 267, 414, 504, 556, 912
FauI	CCCGC	2 cut(s)	155, 290
FauNDI	CATATG	1 cut(s)	428
FblI	GTMKAC	2 cut(s)	635, 1013
Fnu4HI	GCNGC	5 cut(s)	190, 362, 370, 1142, 1145
FokI	GGATG	2 cut(s)	140, 696
FriOI	GRGCYC	2 cut(s)	73, 243
Fsp4HI	GCNGC	5 cut(s)	190, 362, 370, 1142, 1145
FspBI	CTAG	3 cut(s)	35, 581, 621
GlaI	GCGC	5 cut(s)	203, 433, 439, 441, 561
GluI	GCNGC	5 cut(s)	190, 362, 370, 1142, 1145
HaeIII	GGCC	5 cut(s)	294, 353, 385, 1057, 1144
HapII	CCGG	1 cut(s)	1178
HgaI	GACGC	2 cut(s)	361, 1125
HhaI	GCGC	5 cut(s)	204, 434, 440, 442, 562
Hin1II	CATG	8 cut(s)	135, 229, 238, 271, 418, 508, 560, 916
Hin6I	GCGC	5 cut(s)	202, 432, 438, 440, 560
HinP1I	GCGC	5 cut(s)	202, 432, 438, 440, 560
HincII	GTYRAC	2 cut(s)	726, 1014
HindII	GTYRAC	2 cut(s)	726, 1014
HindIII	AAGCTT	1 cut(s)	1066
HpaII	CCGG	1 cut(s)	1178
HphI	GGTGA	5 cut(s)	4, 16, 205, 547, 1123
Hpy166II	GTNNAC	8 cut(s)	12, 49, 274, 538, 636, 726, 937, 1014
Hpy188I	TCNGA	7 cut(s)	247, 489, 554, 659, 975, 1064, 1084
Hpy188III	TCNNGA	1 cut(s)	376
Hpy8I	GTNNAC	8 cut(s)	12, 49, 274, 538, 636, 726, 937, 1014
Hpy99I	CGWCG	3 cut(s)	1015, 1141, 1189
HpyAV	CCTTC	2 cut(s)	28, 922
HpyCH4III	ACNGT	4 cut(s)	454, 730, 1018, 1043
HpyCH4V	TGCA	4 cut(s)	229, 260, 418, 1046
HpyF10VI	GCNNNNNNNGC	5 cut(s)	247, 291, 350, 490, 647
HpyF3I	CTNAG	4 cut(s)	365, 616, 974, 1072
Hsp92II	CATG	8 cut(s)	135, 229, 238, 271, 418, 508, 560, 916
HspAI	GCGC	5 cut(s)	202, 432, 438, 440, 560
Kzo9I	GATC	1 cut(s)	951
LmnI	GCTCC	6 cut(s)	68, 238, 247, 555, 751, 773
Lsp1109I	GCAGC	2 cut(s)	373, 381
LweI	GCATC	2 cut(s)	493, 1117
MaeI	CTAG	3 cut(s)	35, 581, 621
MaeIII	GTNAC	1 cut(s)	1037
MalI	GATC	1 cut(s)	953
MbiI	CCGCTC	1 cut(s)	250
MboI	GATC	1 cut(s)	951
MhlI	GDGCHC	3 cut(s)	73, 243, 552
MluCI	AATT	1 cut(s)	779
MlyI	GAGTC	8 cut(s)	188, 204, 518, 588, 917, 964, 1040, 1190
MmeI	TCCRAC	1 cut(s)	577
MseI	TTAA	2 cut(s)	407, 965
MspA1I	CMGCKG	1 cut(s)	797
MspI	CCGG	1 cut(s)	1178
MspR9I	CCNGG	1 cut(s)	714
MvaI	CCWGG	1 cut(s)	714
MvnI	CGCG	6 cut(s)	189, 204, 440, 675, 956, 1141
MwoI	GCNNNNNNNGC	5 cut(s)	247, 291, 350, 490, 647
NcoI	CCATGG	2 cut(s)	267, 504
NdeI	CATATG	1 cut(s)	428
NdeII	GATC	1 cut(s)	951
NheI	GCTAGC	1 cut(s)	620
NlaIII	CATG	8 cut(s)	135, 229, 238, 271, 418, 508, 560, 916
NlaIV	GGNNCC	4 cut(s)	70, 193, 502, 604
NmuCI	GTSAC	1 cut(s)	1037
NotI	GCGGCCGC	1 cut(s)	1142
NspI	RCATGY	3 cut(s)	135, 418, 560
NspV	TTCGAA	1 cut(s)	121
PaeI	GCATGC	1 cut(s)	135
PauI	GCGCGC	1 cut(s)	438
PceI	AGGCCT	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	2 cut(s)	417, 1019
PfeI	GAWTC	4 cut(s)	379, 577, 738, 1114
PkrI	GCNGC	5 cut(s)	191, 363, 371, 1143, 1146
PleI	GAGTC	8 cut(s)	187, 204, 517, 588, 916, 964, 1039, 1189
PpsI	GAGTC	8 cut(s)	187, 204, 517, 588, 916, 964, 1039, 1189
Psp124BI	GAGCTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	712
PspN4I	GGNNCC	4 cut(s)	70, 193, 502, 604
PspPI	GGNCC	3 cut(s)	252, 271, 1055
PstNI	CAGNNNCTG	1 cut(s)	493
PteI	GCGCGC	1 cut(s)	438
PvuII	CAGCTG	1 cut(s)	797
RsaI	GTAC	2 cut(s)	50, 872
RsaNI	GTAC	2 cut(s)	49, 871
SacI	GAGCTC	1 cut(s)	243
SalI	GTCGAC	1 cut(s)	1012
SaqAI	TTAA	2 cut(s)	407, 965
SatI	GCNGC	5 cut(s)	190, 362, 370, 1142, 1145
Sau3AI	GATC	1 cut(s)	951
Sau96I	GGNCC	3 cut(s)	252, 271, 1055
SchI	GAGTC	8 cut(s)	188, 204, 518, 588, 917, 964, 1040, 1190
ScrFI	CCNGG	1 cut(s)	714
SduI	GDGCHC	3 cut(s)	73, 243, 552
SfaNI	GCATC	2 cut(s)	493, 1117
SfcI	CTRYAG	1 cut(s)	1131
SfuI	TTCGAA	1 cut(s)	121
SinI	GGWCC	2 cut(s)	252, 271
SpeI	ACTAGT	1 cut(s)	34
SphI	GCATGC	1 cut(s)	135
Sse9I	AATT	1 cut(s)	779
SseBI	AGGCCT	1 cut(s)	353
SspI	AATATT	1 cut(s)	126
SspMI	CTAG	3 cut(s)	35, 581, 621
SstI	GAGCTC	1 cut(s)	243
StuI	AGGCCT	1 cut(s)	353
StyD4I	CCNGG	1 cut(s)	712
StyI	CCWWGG	2 cut(s)	267, 504
TaaI	ACNGT	4 cut(s)	454, 730, 1018, 1043
TaqI	TCGA	4 cut(s)	121, 177, 1013, 1034
TasI	AATT	1 cut(s)	779
TatI	WGTACW	2 cut(s)	48, 870
TauI	GCSGC	3 cut(s)	192, 1144, 1147
TfiI	GAWTC	4 cut(s)	379, 577, 738, 1114
Tru1I	TTAA	2 cut(s)	407, 965
Tru9I	TTAA	2 cut(s)	407, 965
TscAI	CASTG	2 cut(s)	51, 687
TseFI	GTSAC	1 cut(s)	1037
TseI	GCWGC	2 cut(s)	361, 369
Tsp45I	GTSAC	1 cut(s)	1037
TspDTI	ATGAA	2 cut(s)	10, 858
TspRI	CASTG	2 cut(s)	51, 687
VpaK11BI	GGWCC	2 cut(s)	252, 271
XceI	RCATGY	3 cut(s)	135, 418, 560
XcmI	CCANNNNNNNNNTGG	2 cut(s)	232, 511
XmiI	GTMKAC	2 cut(s)	635, 1013
XspI	CTAG	3 cut(s)	35, 581, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.