Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009599.1

Orthogroup ID

OG0004570

Physical Location & Seq

Genomic Coordinates Reverse (-)

41374 .. 41847

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009599.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgaatgcagggcggatgtctgctggggccctccgcattcaggaggagcaagacctttctacacacgattttcccgccaacatcagtctctatttcttcttcttcctcgtcggcctcgagctcgacattgacgccatccgccacaccggaaagaagtccctcggcatcgccctctgcgagatcaccctcccctttgtcctcggcatcggcacctccgaagccctacgcgccaccgtctcgaaaggcatgaaacaaggccccttcctcgtcttcaacggcgtcgccctctccatcactgccttccccgtcctggcccgcatcctcgctgagctcaagctcctcaccaccgatgtcggccgcattgccatgttcatacatcgaccagaattagaagcaagagttgaggccacagcaagaacgtgcaccttgaatcagaagggtggccctttattgcaggacctcgatcttgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0031410 GO:0031982 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

157

Amino Acids

17.04

Weight (kDa)

6.28

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17630 AT3G17630
fragaria_vesca	FvH4_4g21880
malus_domestica	MD13G1136000.v1.1 MD16G1131400.v1.1
prunus_persica	Prupe.1G209400_v2.0.a1
pyrus_communis	pycom16g11580
rosa_chinensis	RchiOBHm_Chr3g0483861
rosa_laevigata	RLG00000007178 RLG00000023257
rosa_multiflora	Rmu_co8183874.1_g000001 Rmu_co8462775.1_g000001 Rmu_sc0004940.1_g000012 Rmu_sc0005901.1_g000001 Rmu_sc0009599.1_g000012
rosa_roxburghii	Rroxscaffold_5G00369850 Rroxscaffold_6G00398090
rosa_rugosa	Rorug03G0208200.1 Rorug03G0208300 Rorug04G0222700 Rorug04G0222800
rosa_samantha	Rh3AG257000 Rh3BG293400 Rh3CG291700 Rh3DG286700 Rh4AG279900 Rh4AG280100 Rh4BG285300 Rh4BG285500 Rh4CG300900
rosa_wichuraiana	Rw3G023230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	209
AccII	CGCG	1 cut(s)	228
AciI	CCGC	6 cut(s)	13, 34, 75, 139, 316, 358
AcoI	YGGCCR	1 cut(s)	355
AcyI	GRCGYC	2 cut(s)	132, 279
AfiI	CCNNNNNNNGG	2 cut(s)	40, 310
AgsI	TTSAA	2 cut(s)	274, 430
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	3 cut(s)	121, 331, 337
AluI	AGCT	3 cut(s)	121, 331, 337
Alw21I	GWGCWC	3 cut(s)	123, 333, 425
Alw26I	GTCTC	2 cut(s)	92, 241
Alw44I	GTGCAC	1 cut(s)	421
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	7 cut(s)	27, 112, 256, 312, 355, 405, 442
ApaI	GGGCCC	1 cut(s)	31
ApaLI	GTGCAC	1 cut(s)	421
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	6 cut(s)	27, 28, 257, 313, 443, 457
AsuHPI	GGTGA	2 cut(s)	175, 334
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	457
BaeGI	GKGCMC	2 cut(s)	31, 425
BanI	GGYRCC	1 cut(s)	209
BanII	GRGCYC	3 cut(s)	31, 123, 333
BbsI	GAAGAC	1 cut(s)	262
Bbv12I	GWGCWC	3 cut(s)	123, 333, 425
BccI	CCATC	2 cut(s)	143, 299
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	311
BcoDI	GTCTC	2 cut(s)	92, 241
BisI	GCNGC	1 cut(s)	358
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	359
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	457
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	6 cut(s)	27, 28, 257, 313, 443, 457
BmiI	GGNNCC	4 cut(s)	28, 29, 211, 259
BmrFI	CCNGG	1 cut(s)	311
BmsI	GCATC	3 cut(s)	174, 213, 327
BpiI	GAAGAC	1 cut(s)	262
Bpu1102I	GCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	317
BsaHI	GRCGYC	2 cut(s)	132, 279
BsaJI	CCNNGG	2 cut(s)	160, 199
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 310
Bse3DI	GCAATG	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	2 cut(s)	160, 199
BseGI	GGATG	3 cut(s)	21, 135, 318
BseLI	CCNNNNNNNGG	2 cut(s)	40, 310
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	318
BseRI	GAGGAG	2 cut(s)	59, 329
BseSI	GKGCMC	2 cut(s)	31, 425
BseX3I	CGGCCG	1 cut(s)	355
BseYI	CCCAGC	1 cut(s)	23
Bsh1236I	CGCG	1 cut(s)	228
Bsh1285I	CGRYCG	1 cut(s)	358
BshFI	GGCC	7 cut(s)	29, 114, 258, 314, 357, 407, 444
BshNI	GGYRCC	1 cut(s)	209
BsiEI	CGRYCG	1 cut(s)	358
BsiHKAI	GWGCWC	3 cut(s)	123, 333, 425
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	2 cut(s)	40, 310
BsmAI	GTCTC	2 cut(s)	92, 241
BsmBI	CGTCTC	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	142
BsmI	GAATGC	2 cut(s)	10, 36
BsnI	GGCC	7 cut(s)	29, 114, 258, 314, 357, 407, 444
BsoBI	CYCGRG	1 cut(s)	116
Bsp120I	GGGCCC	1 cut(s)	27
Bsp1286I	GDGCHC	4 cut(s)	31, 123, 333, 425
Bsp143I	GATC	2 cut(s)	180, 463
Bsp1720I	GCTNAGC	1 cut(s)	327
BspACI	CCGC	6 cut(s)	13, 34, 75, 139, 316, 358
BspANI	GGCC	7 cut(s)	29, 114, 258, 314, 357, 407, 444
BspCNI	CTCAG	1 cut(s)	319
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	4 cut(s)	28, 29, 211, 259
BspT107I	GGYRCC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	360
BssECI	CCNNGG	2 cut(s)	160, 199
BssMI	GATC	2 cut(s)	180, 463
BssNI	GRCGYC	2 cut(s)	132, 279
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	235
BstACI	GRCGYC	2 cut(s)	132, 279
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	1 cut(s)	327
BstF5I	GGATG	3 cut(s)	21, 135, 318
BstFNI	CGCG	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	2 cut(s)	183, 466
BstMAI	GTCTC	2 cut(s)	92, 241
BstMBI	GATC	2 cut(s)	180, 463
BstMCI	CGRYCG	1 cut(s)	358
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	309
BstSLI	GKGCMC	2 cut(s)	31, 425
BstUI	CGCG	1 cut(s)	228
BstV2I	GAAGAC	1 cut(s)	262
BstZI	CGGCCG	1 cut(s)	355
BsuRI	GGCC	7 cut(s)	29, 114, 258, 314, 357, 407, 444
BtgZI	GCGATG	1 cut(s)	151
BtsCI	GGATG	3 cut(s)	21, 135, 318
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	316
CfoI	GCGC	1 cut(s)	230
Cfr13I	GGNCC	6 cut(s)	27, 28, 257, 313, 443, 457
CseI	GACGC	2 cut(s)	140, 268
CviAII	CATG	2 cut(s)	247, 367
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	2 cut(s)	182, 465
DpnII	GATC	2 cut(s)	180, 463
EaeI	YGGCCR	1 cut(s)	355
EagI	CGGCCG	1 cut(s)	355
EciI	GGCGGA	2 cut(s)	28, 128
Ecl136II	GAGCTC	2 cut(s)	121, 331
EclXI	CGGCCG	1 cut(s)	355
Eco24I	GRGCYC	3 cut(s)	31, 123, 333
Eco47I	GGWCC	1 cut(s)	457
Eco52I	CGGCCG	1 cut(s)	355
Eco53kI	GAGCTC	2 cut(s)	121, 331
Eco88I	CYCGRG	1 cut(s)	116
EcoICRI	GAGCTC	2 cut(s)	121, 331
EcoO109I	RGGNCCY	4 cut(s)	27, 28, 257, 457
EcoRII	CCWGG	1 cut(s)	309
EcoT38I	GRGCYC	3 cut(s)	31, 123, 333
Esp3I	CGTCTC	1 cut(s)	241
FaeI	CATG	2 cut(s)	250, 370
FaiI	YATR	3 cut(s)	248, 368, 374
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	2 cut(s)	246, 366
FauI	CCCGC	2 cut(s)	82, 323
Fnu4HI	GCNGC	1 cut(s)	358
FokI	GGATG	3 cut(s)	28, 122, 305
FriOI	GRGCYC	3 cut(s)	31, 123, 333
Fsp4HI	GCNGC	1 cut(s)	358
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	1 cut(s)	358
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	7 cut(s)	29, 114, 258, 314, 357, 407, 444
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	2 cut(s)	140, 268
HhaI	GCGC	1 cut(s)	230
Hin1I	GRCGYC	2 cut(s)	132, 279
Hin1II	CATG	2 cut(s)	250, 370
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HinfI	GANTC	1 cut(s)	430
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	2 cut(s)	175, 334
Hpy166II	GTNNAC	1 cut(s)	423
Hpy188I	TCNGA	2 cut(s)	217, 435
Hpy188III	TCNNGA	2 cut(s)	41, 238
Hpy8I	GTNNAC	1 cut(s)	423
Hpy99I	CGWCG	2 cut(s)	113, 284
HpyAV	CCTTC	3 cut(s)	271, 310, 430
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	3 cut(s)	8, 423, 454
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	1 cut(s)	419
Hsp92I	GRCGYC	2 cut(s)	132, 279
Hsp92II	CATG	2 cut(s)	250, 370
HspAI	GCGC	1 cut(s)	228
Kzo9I	GATC	2 cut(s)	180, 463
LmnI	GCTCC	2 cut(s)	46, 342
LpnPI	CCDG	7 cut(s)	9, 26, 160, 296, 323, 396, 440
LweI	GCATC	3 cut(s)	174, 213, 327
MaeII	ACGT	1 cut(s)	419
MalI	GATC	2 cut(s)	182, 465
MboI	GATC	2 cut(s)	180, 463
MboII	GAAGA	4 cut(s)	88, 91, 94, 262
MhlI	GDGCHC	4 cut(s)	31, 123, 333, 425
MluCI	AATT	1 cut(s)	386
MseI	TTAA	1 cut(s)	472
MslI	CAYNNNNRTG	1 cut(s)	365
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	311
Mva1269I	GAATGC	2 cut(s)	10, 36
MvaI	CCWGG	1 cut(s)	311
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeII	GATC	2 cut(s)	180, 463
NlaIII	CATG	2 cut(s)	250, 370
NlaIV	GGNNCC	4 cut(s)	28, 29, 211, 259
NmeAIII	GCCGAG	2 cut(s)	141, 180
PaeR7I	CTCGAG	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	3 cut(s)	114, 174, 213
PctI	GAATGC	2 cut(s)	10, 36
PfeI	GAWTC	1 cut(s)	430
PkrI	GCNGC	1 cut(s)	359
PpuMI	RGGWCCY	1 cut(s)	457
Psp124BI	GAGCTC	2 cut(s)	123, 333
Psp5II	RGGWCCY	1 cut(s)	457
Psp6I	CCWGG	1 cut(s)	309
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	4 cut(s)	28, 29, 211, 259
PspOMI	GGGCCC	1 cut(s)	27
PspPI	GGNCC	6 cut(s)	27, 28, 257, 313, 443, 457
PspPPI	RGGWCCY	1 cut(s)	457
PspXI	VCTCGAGB	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	365
SacI	GAGCTC	2 cut(s)	123, 333
SaqAI	TTAA	1 cut(s)	472
SatI	GCNGC	1 cut(s)	358
Sau3AI	GATC	2 cut(s)	180, 463
Sau96I	GGNCC	6 cut(s)	27, 28, 257, 313, 443, 457
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	4 cut(s)	31, 123, 333, 425
SetI	ASST	8 cut(s)	57, 123, 215, 333, 339, 422, 428, 462
SfaNI	GCATC	3 cut(s)	174, 213, 327
Sfr274I	CTCGAG	1 cut(s)	116
SinI	GGWCC	1 cut(s)	457
SlaI	CTCGAG	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	365
SmlI	CTYRAG	2 cut(s)	116, 332
SmoI	CTYRAG	2 cut(s)	116, 332
Sse9I	AATT	1 cut(s)	386
SsiI	CCGC	6 cut(s)	13, 34, 75, 139, 316, 358
SstI	GAGCTC	2 cut(s)	123, 333
StyD4I	CCNGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	1 cut(s)	422
TaqI	TCGA	5 cut(s)	117, 123, 239, 379, 462
TasI	AATT	1 cut(s)	386
TauI	GCSGC	1 cut(s)	360
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	1 cut(s)	472
Tru9I	TTAA	1 cut(s)	472
TscAI	CASTG	1 cut(s)	301
TspDTI	ATGAA	3 cut(s)	17, 263, 361
TspRI	CASTG	1 cut(s)	301
VneI	GTGCAC	1 cut(s)	421
VpaK11BI	GGWCC	1 cut(s)	457
XhoI	CTCGAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.