Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0004570

Physical Location & Seq

Genomic Coordinates Reverse (-)

29595204 .. 29599368

Gene Structure 4165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG286700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2244 bp

ATGCAGGGCGGATGTCTGCTGGGCCCCTCCGCATTCGGGAGGAGCAAGACCTTTCTACACATGATTTTCCCCCCAAAAGGCATGACGGTGCTAGACACGGTAGCCAACATCGGGCTCTGCTTCTTCCTCTTCCTCGTCGGCCTTGAGCTCGACATCGGCGCCATCCGTCGCACAGGCAAGAAGTCCCTCGGCATCGCCTTCTGCGGGATCACCCTCCCCTTCGTCCTCGGCATCGGCACCTCCGAAGCCCTACGCGCCACTGTCTCGAAAGGCGTGAAACAAGGCCCCTTCCTCGTTTTCAACGGCGTCGCCCTCTCCATCACCGCCTTCCCCGTCCTCGCCCGCATCCTCGCTGAGCTCAAGCTCCTCACCACCGACGTCGGCCGCATCGCCATGTCCGCCGCCGCCGTCAACGACGTCGCCGCCTGGATCCTTCTAGCCCTCGCCATCGCCCTCACCGGCAACAACACCTCCCCGCTAGTCTCCGTCTGGGTCCTCCTCTGCGGTGCCGGCTTCGTCGGGTTCGCCGTCGTCGCCATCCGCCCCATACTGGTCATGATGGCGCGAAGGTCCCAGGAGGGCGAACCCGTGAAGGAGCTCTACATCTGCATCACTCTCTCGCTGGTTTTGGCCGCGGGGTTCGTGACGGACACGATTGGGATACACGCGCTGTTCGGCGCGTTCGTGGTGGGGATCATAATGCCGAAGGAGGGTCCGTTCGCGGGTGTGTTGATAGAGAAGATTGAGGACCTGGTTTCGGGGCTTCTATTGCCGCTTTATTTTGTATCCAGTGGGCTCAAGACTAATTTTTTGACTATAAGCGGGGGGGTGTCGTGGGGTATGCTGGTGCTGGTGATATGTACAGCGTCGTTTGGGAAGATCGTCGGGACTGTCACCGTGTCGATGCTGTTCAAGGTGCCTTTCAGGGAAGCCTTGGCGCTTGGCTTCCTTATGAATACAAAGGGCTTGGTGGAGCTCATCGTCCTCAATATTGGCAAGGATAGAAAGGTACTGAACGAACAGACTTTTGCCATCTTTGTTTTGATGGCGTTGTTCACCACCTTCATCACCACACCACTAGTGATGGCAGTGTACAAACCAGCAAGAAAGGGAGCCCCTTACAAACTACGCACCATTTTTCGCAAAAGCCCAGACACAGAACTTCGAATATTGGCATGCTTCCACACCACCCGCAACATCCCCACCATTATCAACCTCATCGAGTCGTCTCGCGGCACCCACAAGCGCGGGCGACTCACCATCTACGCCATGCACCTCATGGAGCTCTCGGAGCGGTCCTCTGCAATCTCCATGGTCCACAAAGCCCGCTATAATGGCCTCCCATTTTGGAACAAGAAGAGTGATGGAAATGACCAAATGGTTATTGCTTTTGAGGCCTACGAGCAGCTCAGCAGCGTCAAGATTCGGCCAGCCACCGCCATCTCTTCTTTAAACGACATGCACGAGGACATATGCGCCTGCGCGCACCAAAAAACTGTGGCAATGATTTTGTTGCCGTTTCACAAGCATCAGAAGCTGGACGGCACCATGGAGTCGGTGGGACACTCATTTCAAGTGGTGAACGAGCGTGTGCTCCGACATGCGCCTTGTTCGGTTGGGATTCTAGTTGATAGAGGACTCGGTGGCACCACGCAGGTCTCAGCTAGCGAAGTGTCGTATACGGCGGTGGTGGCGTTCTTCGGAGGAAGAGATGACCGGGAGGCACTGGCTTATGGTATGAGACTGGCTGAACATCCTGGGATTGCGTTGACTGTTTTTAGATTCGTTGCTTCACAAGGGAAGACATTGAGATTTGGAGCGAAATTAGTTGGGATAACAGCTGACAACAAGAAAATACTGAAAGAAGAAGATAGTAGCCAAGAGAATGAAGAGGACGAGAAGTTCTTGGAGGAGTACAAGAATGTAAGAAGTAGCAATAAGGAAAAGGAAGAGTCCATGTTTTACGAGGAGAAGGTGGTGGACAGCAAAGGGGAGATCGCGGTGGCATTAAAGACTCTGAGCAAGCACAACTTGTTTATAGTAGGGAGAATGTCGTCGACTGTCCCGTTGGTAGAGTCGAGTGACTGTGCAGAGCTTGGGCCAATCGGAAGCTTCTTAGCCTCGTCAGACTTCTCTTCCACAGCTTCAGTTGTGGTGATTCAACAATATGATGCTACAGCGTCGCGGCCGCTTGTGGTGGAGGAAGCTGACTATGAGTTGCCGGAGTCGTCGTCTATGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0031410 GO:0031982 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

747

Amino Acids

80.98

Weight (kDa)

8.58

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	4 - 361	4.4e-55	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	416 - 556	2.3e-51	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	562 - 724	5.6e-19	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17630 AT3G17630
fragaria_vesca	FvH4_4g21880
malus_domestica	MD13G1136000.v1.1 MD16G1131400.v1.1
prunus_persica	Prupe.1G209400_v2.0.a1
pyrus_communis	pycom16g11580
rosa_chinensis	RchiOBHm_Chr3g0483861
rosa_laevigata	RLG00000007178 RLG00000023257
rosa_multiflora	Rmu_co8183874.1_g000001 Rmu_co8462775.1_g000001 Rmu_sc0004940.1_g000012 Rmu_sc0005901.1_g000001 Rmu_sc0009599.1_g000012
rosa_roxburghii	Rroxscaffold_5G00369850 Rroxscaffold_6G00398090
rosa_rugosa	Rorug03G0208200.1 Rorug03G0208300 Rorug04G0222700 Rorug04G0222800
rosa_samantha	Rh3AG257000 Rh3BG293400 Rh3CG291700 Rh3DG286700 Rh4AG279900 Rh4AG280100 Rh4BG285300 Rh4BG285500 Rh4CG300900
rosa_wichuraiana	Rw3G023230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	381, 420
Acc36I	ACCTGC	1 cut(s)	1645
AccB1I	GGYRCC	7 cut(s)	158, 236, 506, 916, 1235, 1544, 1646
AccBSI	CCGCTC	1 cut(s)	1294
AccI	GTMKAC	2 cut(s)	1679, 2057
AclWI	GGATC	4 cut(s)	215, 424, 437, 701
AcoI	YGGCCR	4 cut(s)	382, 630, 1427, 2186
AcuI	CTGAAG	1 cut(s)	2130
AcyI	GRCGYC	4 cut(s)	159, 306, 378, 417
AfaI	GTAC	4 cut(s)	862, 1011, 1094, 1916
AfiI	CCNNNNNNNGG	8 cut(s)	36, 77, 111, 204, 550, 710, 722, 757
AgsI	TTSAA	4 cut(s)	301, 913, 1574, 2162
AhlI	ACTAGT	1 cut(s)	1078
AjnI	CCWGG	4 cut(s)	425, 573, 750, 1756
AloI	GAACNNNNNNTCC	4 cut(s)	701, 733, 1886, 1918
Alw21I	GWGCWC	6 cut(s)	150, 360, 600, 978, 1287, 1596
Alw26I	GTCTC	5 cut(s)	268, 487, 1233, 1663, 1735
AlwI	GGATC	4 cut(s)	215, 424, 437, 701
AlwNI	CAGNNNCTG	1 cut(s)	1537
ApaI	GGGCCC	1 cut(s)	26
ApeKI	GCWGC	2 cut(s)	1405, 1413
ArsI	GACNNNNNNTTYG	2 cut(s)	793, 825
AsuC2I	CCSGG	1 cut(s)	1718
AsuII	TTCGAA	1 cut(s)	1165
AsuNHI	GCTAGC	1 cut(s)	1664
AvaII	GGWCC	6 cut(s)	493, 570, 713, 748, 1296, 1315
BaeGI	GKGCMC	1 cut(s)	26
BamHI	GGATCC	1 cut(s)	429
BanI	GGYRCC	7 cut(s)	158, 236, 506, 916, 1235, 1544, 1646
BanII	GRGCYC	9 cut(s)	26, 117, 150, 360, 600, 798, 978, 1117, 1287
BarI	GAAGNNNNNNTAC	2 cut(s)	584, 616
BauI	CACGAG	1 cut(s)	1463
BbsI	GAAGAC	1 cut(s)	1808
Bbv12I	GWGCWC	6 cut(s)	150, 360, 600, 978, 1287, 1596
BbvI	GCAGC	2 cut(s)	1417, 1425
BceAI	ACGGC	6 cut(s)	319, 392, 512, 1501, 1558, 1698
BciT130I	CCWGG	4 cut(s)	427, 575, 752, 1758
BciVI	GTATCC	2 cut(s)	654, 796
BcnI	CCSGG	1 cut(s)	1718
BcoDI	GTCTC	5 cut(s)	268, 487, 1233, 1663, 1735
BcuI	ACTAGT	1 cut(s)	1078
BfaI	CTAG	6 cut(s)	92, 437, 479, 1079, 1625, 1665
BfmI	CTRYAG	1 cut(s)	2175
BfoI	RGCGCY	2 cut(s)	162, 941
BfuAI	ACCTGC	1 cut(s)	1645
BfuI	GTATCC	2 cut(s)	654, 796
BlpI	GCTNAGC	2 cut(s)	354, 1409
Bme1390I	CCNGG	5 cut(s)	427, 575, 752, 1718, 1758
Bme18I	GGWCC	6 cut(s)	493, 570, 713, 748, 1296, 1315
BmrFI	CCNGG	5 cut(s)	427, 575, 752, 1718, 1758
BmsI	GCATC	8 cut(s)	201, 240, 354, 396, 618, 894, 1537, 2161
BmtI	GCTAGC	1 cut(s)	1668
BpiI	GAAGAC	1 cut(s)	1808
BplI	GAGNNNNNCTC	2 cut(s)	1283, 1315
Bpu1102I	GCTNAGC	2 cut(s)	354, 1409
Bpu14I	TTCGAA	1 cut(s)	1165
BpuEI	CTTGAG	3 cut(s)	164, 344, 782
BpuMI	CCSGG	1 cut(s)	1718
BsaHI	GRCGYC	4 cut(s)	159, 306, 378, 417
BsaI	GGTCTC	1 cut(s)	1663
BsaJI	CCNNGG	8 cut(s)	187, 226, 573, 633, 933, 1311, 1548, 1757
BsaXI	ACNNNNNCTCC	5 cut(s)	455, 485, 701, 731, 2216
Bsc4I	CCNNNNNNNGG	8 cut(s)	36, 77, 111, 204, 550, 710, 722, 757
Bse118I	RCCGGY	2 cut(s)	458, 509
Bse1I	ACTGG	4 cut(s)	555, 789, 1731, 1749
Bse3DI	GCAATG	1 cut(s)	1509
BseBI	CCWGG	4 cut(s)	427, 575, 752, 1758
BseDI	CCNNGG	8 cut(s)	187, 226, 573, 633, 933, 1311, 1548, 1757
BseGI	GGATG	6 cut(s)	17, 162, 345, 537, 1197, 1753
BseLI	CCNNNNNNNGG	8 cut(s)	36, 77, 111, 204, 550, 710, 722, 757
BseMI	GCAATG	1 cut(s)	1509
BseMII	CTCAG	4 cut(s)	345, 1423, 1674, 2009
BseNI	ACTGG	4 cut(s)	555, 789, 1731, 1749
BsePI	GCGCGC	1 cut(s)	1482
BseRI	GAGGAG	5 cut(s)	55, 356, 488, 1925, 1982
BseSI	GKGCMC	1 cut(s)	26
BseX3I	CGGCCG	2 cut(s)	382, 2186
BseXI	GCAGC	2 cut(s)	1417, 1425
BseYI	CCCAGC	1 cut(s)	19
BsgI	GTGCAG	1 cut(s)	2109
Bsh1285I	CGRYCG	2 cut(s)	385, 2189
BshNI	GGYRCC	7 cut(s)	158, 236, 506, 916, 1235, 1544, 1646
BsiEI	CGRYCG	2 cut(s)	385, 2189
BsiHKAI	GWGCWC	6 cut(s)	150, 360, 600, 978, 1287, 1596
BsiSI	CCGG	4 cut(s)	459, 510, 1717, 2222
BslFI	GGGAC	5 cut(s)	169, 556, 901, 1575, 2048
BslI	CCNNNNNNNGG	8 cut(s)	36, 77, 111, 204, 550, 710, 722, 757
BsmAI	GTCTC	5 cut(s)	268, 487, 1233, 1663, 1735
BsmBI	CGTCTC	1 cut(s)	1233
BsmFI	GGGAC	5 cut(s)	169, 556, 901, 1575, 2048
BsmI	GAATGC	1 cut(s)	32
Bso31I	GGTCTC	1 cut(s)	1663
Bsp119I	TTCGAA	1 cut(s)	1165
Bsp120I	GGGCCC	1 cut(s)	22
Bsp1407I	TGTACA	2 cut(s)	860, 1092
Bsp143I	GATC	5 cut(s)	207, 429, 693, 879, 1995
Bsp1720I	GCTNAGC	2 cut(s)	354, 1409
Bsp19I	CCATGG	2 cut(s)	1311, 1548
BspCNI	CTCAG	4 cut(s)	346, 1422, 1673, 2010
BspHI	TCATGA	1 cut(s)	555
BspMI	ACCTGC	1 cut(s)	1645
BspOI	GCTAGC	1 cut(s)	1668
BspPI	GGATC	4 cut(s)	215, 424, 437, 701
BspT104I	TTCGAA	1 cut(s)	1165
BspT107I	GGYRCC	7 cut(s)	158, 236, 506, 916, 1235, 1544, 1646
BspTNI	GGTCTC	1 cut(s)	1663
BsrBI	CCGCTC	1 cut(s)	1294
BsrDI	GCAATG	1 cut(s)	1509
BsrFI	RCCGGY	2 cut(s)	458, 509
BsrGI	TGTACA	2 cut(s)	860, 1092
BsrI	ACTGG	4 cut(s)	555, 789, 1731, 1749
BssAI	RCCGGY	2 cut(s)	458, 509
BssECI	CCNNGG	8 cut(s)	187, 226, 573, 633, 933, 1311, 1548, 1757
BssHII	GCGCGC	1 cut(s)	1482
BssMI	GATC	5 cut(s)	207, 429, 693, 879, 1995
BssNAI	GTATAC	1 cut(s)	1680
BssNI	GRCGYC	4 cut(s)	159, 306, 378, 417
BssSI	CACGAG	1 cut(s)	1463
BssT1I	CCWWGG	3 cut(s)	933, 1311, 1548
Bst1107I	GTATAC	1 cut(s)	1680
Bst2BI	CACGAG	1 cut(s)	1463
Bst2UI	CCWGG	4 cut(s)	427, 575, 752, 1758
Bst4CI	ACNGT	9 cut(s)	88, 100, 262, 892, 898, 1498, 1774, 2062, 2087
Bst6I	CTCTTC	7 cut(s)	134, 1352, 1450, 1702, 1884, 1944, 2140
BstACI	GRCGYC	4 cut(s)	159, 306, 378, 417
BstAUI	TGTACA	2 cut(s)	860, 1092
BstBI	TTCGAA	1 cut(s)	1165
BstDEI	CTNAG	5 cut(s)	354, 1409, 1660, 2018, 2116
BstDSI	CCRYGG	3 cut(s)	633, 1311, 1548
BstF5I	GGATG	6 cut(s)	17, 162, 345, 537, 1197, 1753
BstH2I	RGCGCY	2 cut(s)	162, 941
BstKTI	GATC	5 cut(s)	210, 432, 696, 882, 1998
BstMAI	GTCTC	5 cut(s)	268, 487, 1233, 1663, 1735
BstMBI	GATC	5 cut(s)	207, 429, 693, 879, 1995
BstMCI	CGRYCG	2 cut(s)	385, 2189
BstNI	CCWGG	4 cut(s)	427, 575, 752, 1758
BstNSI	RCATGY	3 cut(s)	1179, 1462, 1604
BstSCI	CCNGG	5 cut(s)	425, 573, 750, 1716, 1756
BstSFI	CTRYAG	1 cut(s)	2175
BstSLI	GKGCMC	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	1417, 1425
BstV2I	GAAGAC	1 cut(s)	1808
BstX2I	RGATCY	1 cut(s)	429
BstYI	RGATCY	1 cut(s)	429
BstZ17I	GTATAC	1 cut(s)	1680
BstZI	CGGCCG	2 cut(s)	382, 2186
BsuI	GTATCC	2 cut(s)	654, 796
BtgI	CCRYGG	3 cut(s)	633, 1311, 1548
BtgZI	GCGATG	3 cut(s)	178, 373, 433
BtsCI	GGATG	6 cut(s)	17, 162, 345, 537, 1197, 1753
BtsI	GCAGTG	1 cut(s)	1095
BtsIMutI	CAGTG	4 cut(s)	258, 796, 1095, 1724
BveI	ACCTGC	1 cut(s)	1645
CaiI	CAGNNNCTG	1 cut(s)	1537
CciI	TCATGA	1 cut(s)	555
CciNI	GCGGCCGC	1 cut(s)	2186
Cfr10I	RCCGGY	2 cut(s)	458, 509
Cfr42I	CCGCGG	1 cut(s)	636
CseI	GACGC	4 cut(s)	295, 855, 1405, 2169
CsiI	ACCWGGT	1 cut(s)	750
Csp6I	GTAC	4 cut(s)	861, 1010, 1093, 1915
CviQI	GTAC	4 cut(s)	861, 1010, 1093, 1915
DdeI	CTNAG	5 cut(s)	354, 1409, 1660, 2018, 2116
DinI	GGCGCC	1 cut(s)	160
DpnI	GATC	5 cut(s)	209, 431, 695, 881, 1997
DpnII	GATC	5 cut(s)	207, 429, 693, 879, 1995
DraI	TTTAAA	1 cut(s)	1452
EaeI	YGGCCR	4 cut(s)	382, 630, 1427, 2186
EagI	CGGCCG	2 cut(s)	382, 2186
Eam1104I	CTCTTC	7 cut(s)	134, 1352, 1450, 1702, 1884, 1944, 2140
EarI	CTCTTC	7 cut(s)	134, 1352, 1450, 1702, 1884, 1944, 2140
EciI	GGCGGA	3 cut(s)	24, 388, 530
Ecl136II	GAGCTC	5 cut(s)	148, 358, 598, 976, 1285
EclXI	CGGCCG	2 cut(s)	382, 2186
Eco130I	CCWWGG	3 cut(s)	933, 1311, 1548
Eco147I	AGGCCT	1 cut(s)	1397
Eco24I	GRGCYC	9 cut(s)	26, 117, 150, 360, 600, 798, 978, 1117, 1287
Eco31I	GGTCTC	1 cut(s)	1663
Eco47I	GGWCC	6 cut(s)	493, 570, 713, 748, 1296, 1315
Eco52I	CGGCCG	2 cut(s)	382, 2186
Eco53kI	GAGCTC	5 cut(s)	148, 358, 598, 976, 1285
Eco57I	CTGAAG	1 cut(s)	2130
EcoICRI	GAGCTC	5 cut(s)	148, 358, 598, 976, 1285
EcoO109I	RGGNCCY	5 cut(s)	23, 284, 493, 570, 748
EcoRII	CCWGG	4 cut(s)	425, 573, 750, 1756
EcoT14I	CCWWGG	3 cut(s)	933, 1311, 1548
EcoT38I	GRGCYC	9 cut(s)	26, 117, 150, 360, 600, 798, 978, 1117, 1287
EgeI	GGCGCC	1 cut(s)	160
EheI	GGCGCC	1 cut(s)	160
ErhI	CCWWGG	3 cut(s)	933, 1311, 1548
Esp3I	CGTCTC	1 cut(s)	1233
FalI	AAGNNNNNCTT	2 cut(s)	2015, 2047
FaqI	GGGAC	5 cut(s)	169, 556, 901, 1575, 2048
FauI	CCCGC	9 cut(s)	197, 350, 483, 628, 715, 815, 1199, 1241, 1334
FauNDI	CATATG	1 cut(s)	1472
FblI	GTMKAC	2 cut(s)	1679, 2057
FokI	GGATG	6 cut(s)	24, 149, 332, 524, 1184, 1740
FriOI	GRGCYC	9 cut(s)	26, 117, 150, 360, 600, 798, 978, 1117, 1287
FspBI	CTAG	6 cut(s)	92, 437, 479, 1079, 1625, 1665
GsaI	CCCAGC	1 cut(s)	23
HaeII	RGCGCY	2 cut(s)	162, 941
HapII	CCGG	4 cut(s)	459, 510, 1717, 2222
HgaI	GACGC	4 cut(s)	295, 855, 1405, 2169
Hin1I	GRCGYC	4 cut(s)	159, 306, 378, 417
HincII	GTYRAC	3 cut(s)	412, 1770, 2058
HindII	GTYRAC	3 cut(s)	412, 1770, 2058
HindIII	AAGCTT	1 cut(s)	2110
HpaII	CCGG	4 cut(s)	459, 510, 1717, 2222
Hpy166II	GTNNAC	9 cut(s)	412, 1056, 1093, 1318, 1582, 1680, 1770, 1981, 2058
Hpy188I	TCNGA	8 cut(s)	244, 1291, 1533, 1598, 1703, 2019, 2108, 2128
Hpy188III	TCNNGA	7 cut(s)	37, 265, 556, 643, 799, 886, 1420
Hpy8I	GTNNAC	9 cut(s)	412, 1056, 1093, 1318, 1582, 1680, 1770, 1981, 2058
HpyCH4III	ACNGT	9 cut(s)	88, 100, 262, 892, 898, 1498, 1774, 2062, 2087
HpyCH4IV	ACGT	2 cut(s)	378, 417
HpyCH4V	TGCA	6 cut(s)	4, 609, 1273, 1304, 1462, 2090
HpyF3I	CTNAG	5 cut(s)	354, 1409, 1660, 2018, 2116
HpySE526I	ACGT	2 cut(s)	378, 417
Hsp92I	GRCGYC	4 cut(s)	159, 306, 378, 417
KasI	GGCGCC	1 cut(s)	158
KroI	GCCGGC	1 cut(s)	509
KroNI	GCCGGC	1 cut(s)	511
KspI	CCGCGG	1 cut(s)	636
Kzo9I	GATC	5 cut(s)	207, 429, 693, 879, 1995
LmnI	GCTCC	9 cut(s)	42, 369, 595, 973, 1112, 1282, 1291, 1599, 1817
Lsp1109I	GCAGC	2 cut(s)	1417, 1425
LweI	GCATC	8 cut(s)	201, 240, 354, 396, 618, 894, 1537, 2161
MabI	ACCWGGT	1 cut(s)	750
MaeI	CTAG	6 cut(s)	92, 437, 479, 1079, 1625, 1665
MaeII	ACGT	2 cut(s)	378, 417
MaeIII	GTNAC	3 cut(s)	643, 892, 2081
MalI	GATC	5 cut(s)	209, 431, 695, 881, 1997
MbiI	CCGCTC	1 cut(s)	1294
MboI	GATC	5 cut(s)	207, 429, 693, 879, 1995
MflI	RGATCY	1 cut(s)	429
MluCI	AATT	2 cut(s)	805, 1823
Mly113I	GGCGCC	1 cut(s)	159
MlyI	GAGTC	8 cut(s)	1232, 1248, 1562, 1632, 1961, 2008, 2084, 2234
MmeI	TCCRAC	1 cut(s)	1621
MroNI	GCCGGC	1 cut(s)	509
MseI	TTAA	2 cut(s)	1451, 2009
MslI	CAYNNNNRTG	2 cut(s)	86, 392
MspA1I	CMGCKG	2 cut(s)	635, 1841
MspI	CCGG	4 cut(s)	459, 510, 1717, 2222
MspR9I	CCNGG	5 cut(s)	427, 575, 752, 1718, 1758
Mva1269I	GAATGC	1 cut(s)	32
MvaI	CCWGG	4 cut(s)	427, 575, 752, 1758
NaeI	GCCGGC	1 cut(s)	511
NarI	GGCGCC	1 cut(s)	159
NciI	CCSGG	1 cut(s)	1718
NcoI	CCATGG	2 cut(s)	1311, 1548
NdeI	CATATG	1 cut(s)	1472
NdeII	GATC	5 cut(s)	207, 429, 693, 879, 1995
NgoMIV	GCCGGC	1 cut(s)	509
NheI	GCTAGC	1 cut(s)	1664
NmeAIII	GCCGAG	2 cut(s)	168, 207
NmuCI	GTSAC	3 cut(s)	643, 892, 2081
NotI	GCGGCCGC	1 cut(s)	2186
NspI	RCATGY	3 cut(s)	1179, 1462, 1604
NspV	TTCGAA	1 cut(s)	1165
PaeI	GCATGC	1 cut(s)	1179
PagI	TCATGA	1 cut(s)	555
PauI	GCGCGC	1 cut(s)	1482
PceI	AGGCCT	1 cut(s)	1397
PcsI	WCGNNNNNNNCGW	5 cut(s)	240, 525, 681, 1461, 2063
PctI	GAATGC	1 cut(s)	32
PdiI	GCCGGC	1 cut(s)	511
PfeI	GAWTC	4 cut(s)	1423, 1621, 1782, 2158
PleI	GAGTC	8 cut(s)	1231, 1248, 1561, 1632, 1960, 2008, 2083, 2233
PluTI	GGCGCC	1 cut(s)	162
PpsI	GAGTC	8 cut(s)	1231, 1248, 1561, 1632, 1960, 2008, 2083, 2233
PpuMI	RGGWCCY	3 cut(s)	493, 570, 748
Psp124BI	GAGCTC	5 cut(s)	150, 360, 600, 978, 1287
Psp5II	RGGWCCY	3 cut(s)	493, 570, 748
Psp6I	CCWGG	4 cut(s)	425, 573, 750, 1756
PspFI	CCCAGC	1 cut(s)	19
PspGI	CCWGG	4 cut(s)	425, 573, 750, 1756
PspOMI	GGGCCC	1 cut(s)	22
PspPPI	RGGWCCY	3 cut(s)	493, 570, 748
PstNI	CAGNNNCTG	1 cut(s)	1537
PsuI	RGATCY	1 cut(s)	429
PteI	GCGCGC	1 cut(s)	1482
PvuII	CAGCTG	1 cut(s)	1841
RsaI	GTAC	4 cut(s)	862, 1011, 1094, 1916
RsaNI	GTAC	4 cut(s)	861, 1010, 1093, 1915
RseI	CAYNNNNRTG	2 cut(s)	86, 392
SacI	GAGCTC	5 cut(s)	150, 360, 600, 978, 1287
SacII	CCGCGG	1 cut(s)	636
SalI	GTCGAC	1 cut(s)	2056
SaqAI	TTAA	2 cut(s)	1451, 2009
Sau3AI	GATC	5 cut(s)	207, 429, 693, 879, 1995
SchI	GAGTC	8 cut(s)	1232, 1248, 1562, 1632, 1961, 2008, 2084, 2234
ScrFI	CCNGG	5 cut(s)	427, 575, 752, 1718, 1758
SexAI	ACCWGGT	1 cut(s)	750
SfaNI	GCATC	8 cut(s)	201, 240, 354, 396, 618, 894, 1537, 2161
SfcI	CTRYAG	1 cut(s)	2175
SfoI	GGCGCC	1 cut(s)	160
Sfr303I	CCGCGG	1 cut(s)	636
SfuI	TTCGAA	1 cut(s)	1165
SgrBI	CCGCGG	1 cut(s)	636
SinI	GGWCC	6 cut(s)	493, 570, 713, 748, 1296, 1315
SmiMI	CAYNNNNRTG	2 cut(s)	86, 392
SmlI	CTYRAG	3 cut(s)	143, 359, 797
SmoI	CTYRAG	3 cut(s)	143, 359, 797
SpeI	ACTAGT	1 cut(s)	1078
SphI	GCATGC	1 cut(s)	1179
Sse9I	AATT	2 cut(s)	805, 1823
SseBI	AGGCCT	1 cut(s)	1397
SspDI	GGCGCC	1 cut(s)	158
SspI	AATATT	2 cut(s)	991, 1170
SspMI	CTAG	6 cut(s)	92, 437, 479, 1079, 1625, 1665
SstI	GAGCTC	5 cut(s)	150, 360, 600, 978, 1287
StuI	AGGCCT	1 cut(s)	1397
StyD4I	CCNGG	5 cut(s)	425, 573, 750, 1716, 1756
StyI	CCWWGG	3 cut(s)	933, 1311, 1548
TaaI	ACNGT	9 cut(s)	88, 100, 262, 892, 898, 1498, 1774, 2062, 2087
TaiI	ACGT	2 cut(s)	381, 420
TaqI	TCGA	7 cut(s)	150, 266, 902, 1165, 1221, 2057, 2078
TasI	AATT	2 cut(s)	805, 1823
TatI	WGTACW	3 cut(s)	860, 1092, 1914
TauI	GCSGC	9 cut(s)	387, 404, 407, 425, 635, 775, 1236, 2188, 2191
TfiI	GAWTC	4 cut(s)	1423, 1621, 1782, 2158
Tru1I	TTAA	2 cut(s)	1451, 2009
Tru9I	TTAA	2 cut(s)	1451, 2009
TscAI	CASTG	4 cut(s)	265, 796, 1095, 1731
TseFI	GTSAC	3 cut(s)	643, 892, 2081
TseI	GCWGC	2 cut(s)	1405, 1413
Tsp45I	GTSAC	3 cut(s)	643, 892, 2081
TspDTI	ATGAA	3 cut(s)	968, 1054, 1902
TspGWI	ACGGA	4 cut(s)	155, 475, 662, 705
TspRI	CASTG	4 cut(s)	265, 796, 1095, 1731
VpaK11BI	GGWCC	6 cut(s)	493, 570, 713, 748, 1296, 1315
XceI	RCATGY	3 cut(s)	1179, 1462, 1604
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1276, 1555
XmiI	GTMKAC	2 cut(s)	1679, 2057
XspI	CTAG	6 cut(s)	92, 437, 479, 1079, 1625, 1665
ZraI	GACGTC	2 cut(s)	379, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.