Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004940.1

Orthogroup ID

OG0004570

Physical Location & Seq

Genomic Coordinates Reverse (-)

72433 .. 72804

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004940.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgaatgcagggcggatgtctgctggggccctccgcattcaggaggagcaagacctttctacacacgattttccggccaacatcagtctctatttcttcttcttcctcgtcggcctcgagctcgacattgacgccatccgccacacaggaaagaaatccctcggcatcgccctctgcgagatcaccctccccttcgtcctcggcatcggcacctccgaagccctacccgccaccggctcgaaaggcatgaaacaaggccccttcctcgtcttcaacggcgtcgccctctccatcactgccttccccgtcctgaccatgagctcaagctcctcaccaccgatgtcggccgcattgccatgttcatacatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0031410 GO:0031982 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

123

Amino Acids

13.01

Weight (kDa)

5.51

Isoelectric Point (pI)

56.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17630 AT3G17630
fragaria_vesca	FvH4_4g21880
malus_domestica	MD13G1136000.v1.1 MD16G1131400.v1.1
prunus_persica	Prupe.1G209400_v2.0.a1
pyrus_communis	pycom16g11580
rosa_chinensis	RchiOBHm_Chr3g0483861
rosa_laevigata	RLG00000007178 RLG00000023257
rosa_multiflora	Rmu_co8183874.1_g000001 Rmu_co8462775.1_g000001 Rmu_sc0004940.1_g000012 Rmu_sc0005901.1_g000001 Rmu_sc0009599.1_g000012
rosa_roxburghii	Rroxscaffold_5G00369850 Rroxscaffold_6G00398090
rosa_rugosa	Rorug03G0208200.1 Rorug03G0208300 Rorug04G0222700 Rorug04G0222800
rosa_samantha	Rh3AG257000 Rh3BG293400 Rh3CG291700 Rh3DG286700 Rh4AG279900 Rh4AG280100 Rh4BG285300 Rh4BG285500 Rh4CG300900
rosa_wichuraiana	Rw3G023230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	209
AciI	CCGC	5 cut(s)	13, 34, 139, 228, 348
AcoI	YGGCCR	2 cut(s)	75, 345
AcyI	GRCGYC	2 cut(s)	132, 279
AfiI	CCNNNNNNNGG	2 cut(s)	40, 233
AgsI	TTSAA	1 cut(s)	274
AluBI	AGCT	3 cut(s)	121, 321, 327
AluI	AGCT	3 cut(s)	121, 321, 327
Alw21I	GWGCWC	2 cut(s)	123, 323
Alw26I	GTCTC	1 cut(s)	92
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	5 cut(s)	27, 75, 112, 256, 345
ApaI	GGGCCC	1 cut(s)	31
AspS9I	GGNCC	3 cut(s)	27, 28, 257
AsuHPI	GGTGA	2 cut(s)	175, 324
AvaI	CYCGRG	1 cut(s)	116
BaeGI	GKGCMC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	209
BanII	GRGCYC	3 cut(s)	31, 123, 323
BbsI	GAAGAC	1 cut(s)	262
Bbv12I	GWGCWC	2 cut(s)	123, 323
BccI	CCATC	2 cut(s)	143, 299
BceAI	ACGGC	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	92
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	3 cut(s)	27, 28, 257
BmiI	GGNNCC	4 cut(s)	28, 29, 211, 259
BmsI	GCATC	2 cut(s)	174, 213
BpiI	GAAGAC	1 cut(s)	262
BpuEI	CTTGAG	1 cut(s)	307
BsaHI	GRCGYC	2 cut(s)	132, 279
BsaJI	CCNNGG	2 cut(s)	160, 199
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 233
Bse118I	RCCGGY	1 cut(s)	233
Bse3DI	GCAATG	1 cut(s)	350
BseDI	CCNNGG	2 cut(s)	160, 199
BseGI	GGATG	2 cut(s)	21, 135
BseLI	CCNNNNNNNGG	2 cut(s)	40, 233
BseMI	GCAATG	1 cut(s)	350
BseRI	GAGGAG	2 cut(s)	59, 319
BseSI	GKGCMC	1 cut(s)	31
BseX3I	CGGCCG	1 cut(s)	345
BseYI	CCCAGC	1 cut(s)	23
Bsh1285I	CGRYCG	1 cut(s)	348
BshFI	GGCC	5 cut(s)	29, 77, 114, 258, 347
BshNI	GGYRCC	1 cut(s)	209
BsiEI	CGRYCG	1 cut(s)	348
BsiHKAI	GWGCWC	2 cut(s)	123, 323
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	2 cut(s)	74, 234
BslI	CCNNNNNNNGG	2 cut(s)	40, 233
BsmAI	GTCTC	1 cut(s)	92
BsmI	GAATGC	2 cut(s)	10, 36
BsnI	GGCC	5 cut(s)	29, 77, 114, 258, 347
BsoBI	CYCGRG	1 cut(s)	116
Bsp120I	GGGCCC	1 cut(s)	27
Bsp1286I	GDGCHC	3 cut(s)	31, 123, 323
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	5 cut(s)	13, 34, 139, 228, 348
BspANI	GGCC	5 cut(s)	29, 77, 114, 258, 347
BspLI	GGNNCC	4 cut(s)	28, 29, 211, 259
BspT107I	GGYRCC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	350
BsrFI	RCCGGY	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	160, 199
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	2 cut(s)	132, 279
BstACI	GRCGYC	2 cut(s)	132, 279
BstF5I	GGATG	2 cut(s)	21, 135
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	180
BstMCI	CGRYCG	1 cut(s)	348
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 243
BstSLI	GKGCMC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	262
BstZI	CGGCCG	1 cut(s)	345
BsuRI	GGCC	5 cut(s)	29, 77, 114, 258, 347
BtgZI	GCGATG	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	21, 135
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	233
Cfr13I	GGNCC	3 cut(s)	27, 28, 257
CseI	GACGC	2 cut(s)	140, 268
CviAII	CATG	3 cut(s)	247, 316, 357
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
EaeI	YGGCCR	2 cut(s)	75, 345
EagI	CGGCCG	1 cut(s)	345
EciI	GGCGGA	2 cut(s)	28, 128
Ecl136II	GAGCTC	2 cut(s)	121, 321
EclXI	CGGCCG	1 cut(s)	345
Eco24I	GRGCYC	3 cut(s)	31, 123, 323
Eco52I	CGGCCG	1 cut(s)	345
Eco53kI	GAGCTC	2 cut(s)	121, 321
Eco88I	CYCGRG	1 cut(s)	116
EcoICRI	GAGCTC	2 cut(s)	121, 321
EcoO109I	RGGNCCY	3 cut(s)	27, 28, 257
EcoT38I	GRGCYC	3 cut(s)	31, 123, 323
FaeI	CATG	3 cut(s)	250, 319, 360
FaiI	YATR	6 cut(s)	248, 317, 358, 364, 368, 370
FatI	CATG	3 cut(s)	246, 315, 356
FauI	CCCGC	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	2 cut(s)	28, 122
FriOI	GRGCYC	3 cut(s)	31, 123, 323
Fsp4HI	GCNGC	1 cut(s)	348
GluI	GCNGC	1 cut(s)	348
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	5 cut(s)	29, 77, 114, 258, 347
HapII	CCGG	2 cut(s)	74, 234
HgaI	GACGC	2 cut(s)	140, 268
Hin1I	GRCGYC	2 cut(s)	132, 279
Hin1II	CATG	3 cut(s)	250, 319, 360
HpaII	CCGG	2 cut(s)	74, 234
HphI	GGTGA	2 cut(s)	175, 324
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	2 cut(s)	41, 310
Hpy99I	CGWCG	2 cut(s)	113, 284
HpyAV	CCTTC	3 cut(s)	202, 271, 310
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 243
Hsp92I	GRCGYC	2 cut(s)	132, 279
Hsp92II	CATG	3 cut(s)	250, 319, 360
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	2 cut(s)	46, 332
LpnPI	CCDG	6 cut(s)	9, 26, 87, 132, 247, 323
LweI	GCATC	2 cut(s)	174, 213
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	4 cut(s)	88, 91, 94, 262
MhlI	GDGCHC	3 cut(s)	31, 123, 323
MslI	CAYNNNNRTG	1 cut(s)	355
MspI	CCGG	2 cut(s)	74, 234
Mva1269I	GAATGC	2 cut(s)	10, 36
MwoI	GCNNNNNNNGC	2 cut(s)	227, 243
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	3 cut(s)	250, 319, 360
NlaIV	GGNNCC	4 cut(s)	28, 29, 211, 259
NmeAIII	GCCGAG	2 cut(s)	141, 180
PaeR7I	CTCGAG	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	3 cut(s)	114, 174, 213
PctI	GAATGC	2 cut(s)	10, 36
PkrI	GCNGC	1 cut(s)	349
Psp124BI	GAGCTC	2 cut(s)	123, 323
PspFI	CCCAGC	1 cut(s)	23
PspN4I	GGNNCC	4 cut(s)	28, 29, 211, 259
PspOMI	GGGCCC	1 cut(s)	27
PspPI	GGNCC	3 cut(s)	27, 28, 257
PspXI	VCTCGAGB	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	355
SacI	GAGCTC	2 cut(s)	123, 323
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	3 cut(s)	27, 28, 257
SduI	GDGCHC	3 cut(s)	31, 123, 323
SetI	ASST	5 cut(s)	57, 123, 215, 323, 329
SfaNI	GCATC	2 cut(s)	174, 213
Sfr274I	CTCGAG	1 cut(s)	116
SlaI	CTCGAG	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	355
SmlI	CTYRAG	2 cut(s)	116, 322
SmoI	CTYRAG	2 cut(s)	116, 322
SsiI	CCGC	5 cut(s)	13, 34, 139, 228, 348
SstI	GAGCTC	2 cut(s)	123, 323
TaqI	TCGA	3 cut(s)	117, 123, 239
TauI	GCSGC	1 cut(s)	350
TscAI	CASTG	1 cut(s)	301
TspDTI	ATGAA	3 cut(s)	17, 263, 351
TspRI	CASTG	1 cut(s)	301
XhoI	CTCGAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.