Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004570

Physical Location & Seq

Genomic Coordinates Forward (+)

45931146 .. 45931943

Gene Structure 798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG285500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGATCAACCTCATCGAGTCGTCCTGCGGCACCCGCAAGCGTGGACGACTCACCGTCCATGTCATGCACCTCATGGAGCTCTCGGAGCGGTCCTCTGTGACCTCCATGGTCCACAAAGACAGCTACAATGGCCTCCCATTTTGGAACAAGAAGAGTGATAGAAATGACCAAATGGTTATTGCTTTCGAGGCCTACGAGCAGCTCAGCAGCGTCAAAATTCGGCCACCCACCGCCATCTCTTCTTTAAACGACATGCACGAGGACATATGCGCCTGTGCGCACCAAAAAACCGCGACAATGATTTTGTTGCCGTTTCACAAGCATCAGAAGCTGGACGGCACCATGGAGTCGGTGGGACACTCATTTCAAGTGGTGAACGAGCGTGTGCTCCGACATGCACCTTGTTCGGTTGGTATTCTAGTTGATAGAGGACTCGGTGGCACCATGCAAGTCTCAGCCAGCGATGTGTCATATACGGCAGTGGTGGCGTTCTTCAAAGGAAGGGATGACCGGGAGGCACTGGCCTATAGAATGAGACTGGCTGAACATACTGGGATTGCATTGACTATTTTTAGATTCATTGCTCCACATGGGAAGACATTGAGATTTGGAGCGAAATTAGTTGGGATAGCAGCTGACAACAAGAAAATACTGAAAAAAGAAGATTGTGGCCAAGAAAATGAAGAGGACGAGAAGTTCTTGGAGGAGTACAAGAATGTAAGAAGTAGCAGTAAGGAAAAGGAAGAGTCCATGTTTTACGAGGAGAAGGTGGTGGATAGCAAAGGGAGATCGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0031410 GO:0031982 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

265

Amino Acids

29.94

Weight (kDa)

8.51

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHX17_2nd	PF23256	14 - 154	2.4e-48	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	160 - 198	1.3e-06	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17630 AT3G17630
fragaria_vesca	FvH4_4g21880
malus_domestica	MD13G1136000.v1.1 MD16G1131400.v1.1
prunus_persica	Prupe.1G209400_v2.0.a1
pyrus_communis	pycom16g11580
rosa_chinensis	RchiOBHm_Chr3g0483861
rosa_laevigata	RLG00000007178 RLG00000023257
rosa_multiflora	Rmu_co8183874.1_g000001 Rmu_co8462775.1_g000001 Rmu_sc0004940.1_g000012 Rmu_sc0005901.1_g000001 Rmu_sc0009599.1_g000012
rosa_roxburghii	Rroxscaffold_5G00369850 Rroxscaffold_6G00398090
rosa_rugosa	Rorug03G0208200.1 Rorug03G0208300 Rorug04G0222700 Rorug04G0222800
rosa_samantha	Rh3AG257000 Rh3BG293400 Rh3CG291700 Rh3DG286700 Rh4AG279900 Rh4AG280100 Rh4BG285300 Rh4BG285500 Rh4CG300900
rosa_wichuraiana	Rw3G023230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	279
AccB1I	GGYRCC	3 cut(s)	29, 338, 440
AccBSI	CCGCTC	1 cut(s)	88
AccII	CGCG	2 cut(s)	293, 793
AciI	CCGC	6 cut(s)	27, 34, 88, 231, 291, 793
AcoI	YGGCCR	2 cut(s)	221, 670
AcsI	RAATTY	1 cut(s)	216
AfaI	GTAC	1 cut(s)	710
AgsI	TTSAA	2 cut(s)	368, 496
AhdI	GACNNNNNGTC	1 cut(s)	53
AloI	GAACNNNNNNTCC	2 cut(s)	680, 712
AluBI	AGCT	5 cut(s)	79, 123, 202, 331, 635
AluI	AGCT	5 cut(s)	79, 123, 202, 331, 635
Alw21I	GWGCWC	2 cut(s)	81, 390
Alw26I	GTCTC	2 cut(s)	457, 529
AlwNI	CAGNNNCTG	1 cut(s)	331
AoxI	GGCC	5 cut(s)	130, 189, 221, 522, 670
ApeKI	GCWGC	3 cut(s)	199, 207, 632
ApoI	RAATTY	1 cut(s)	216
ArsI	GACNNNNNNTTYG	2 cut(s)	286, 318
AspLEI	GCGC	2 cut(s)	272, 280
AspS9I	GGNCC	2 cut(s)	90, 109
AsuC2I	CCSGG	1 cut(s)	512
AsuHPI	GGTGA	2 cut(s)	43, 385
AvaII	GGWCC	2 cut(s)	90, 109
BalI	TGGCCA	1 cut(s)	672
BanI	GGYRCC	3 cut(s)	29, 338, 440
BanII	GRGCYC	1 cut(s)	81
BauI	CACGAG	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	602
Bbv12I	GWGCWC	2 cut(s)	81, 390
BbvI	GCAGC	3 cut(s)	211, 219, 644
BccI	CCATC	1 cut(s)	242
BceAI	ACGGC	3 cut(s)	295, 352, 492
BcgI	CGANNNNNNTGC	2 cut(s)	387, 421
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	512
BcoDI	GTCTC	2 cut(s)	457, 529
BfaI	CTAG	1 cut(s)	419
BfmI	CTRYAG	1 cut(s)	526
BisI	GCNGC	4 cut(s)	28, 200, 208, 633
BlpI	GCTNAGC	1 cut(s)	203
BlsI	GCNGC	4 cut(s)	29, 201, 209, 634
Bme1390I	CCNGG	1 cut(s)	512
Bme18I	GGWCC	2 cut(s)	90, 109
BmeRI	GACNNNNNGTC	1 cut(s)	53
BmgT120I	GGNCC	2 cut(s)	90, 109
BmiI	GGNNCC	3 cut(s)	31, 340, 442
BmrFI	CCNGG	1 cut(s)	512
BmrI	ACTGGG	1 cut(s)	561
BmsI	GCATC	1 cut(s)	331
BmuI	ACTGGG	1 cut(s)	561
BpiI	GAAGAC	1 cut(s)	602
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
Bpu1102I	GCTNAGC	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	512
BsaJI	CCNNGG	2 cut(s)	105, 342
Bse1I	ACTGG	3 cut(s)	525, 543, 556
Bse3DI	GCAATG	1 cut(s)	579
BseDI	CCNNGG	2 cut(s)	105, 342
BseGI	GGATG	1 cut(s)	511
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	2 cut(s)	217, 468
BseNI	ACTGG	3 cut(s)	525, 543, 556
BseRI	GAGGAG	2 cut(s)	719, 776
BseXI	GCAGC	3 cut(s)	211, 219, 644
Bsh1236I	CGCG	2 cut(s)	293, 793
BshFI	GGCC	5 cut(s)	132, 191, 223, 524, 672
BshNI	GGYRCC	3 cut(s)	29, 338, 440
BsiHKAI	GWGCWC	2 cut(s)	81, 390
BsiSI	CCGG	1 cut(s)	511
BslFI	GGGAC	1 cut(s)	369
BsmAI	GTCTC	2 cut(s)	457, 529
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	5 cut(s)	132, 191, 223, 524, 672
Bsp1286I	GDGCHC	2 cut(s)	81, 390
Bsp143I	GATC	2 cut(s)	3, 788
Bsp1720I	GCTNAGC	1 cut(s)	203
Bsp19I	CCATGG	2 cut(s)	105, 342
BspACI	CCGC	6 cut(s)	27, 34, 88, 231, 291, 793
BspANI	GGCC	5 cut(s)	132, 191, 223, 524, 672
BspCNI	CTCAG	2 cut(s)	216, 467
BspFNI	CGCG	2 cut(s)	293, 793
BspLI	GGNNCC	3 cut(s)	31, 340, 442
BspT107I	GGYRCC	3 cut(s)	29, 338, 440
BsrBI	CCGCTC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	579
BsrI	ACTGG	3 cut(s)	525, 543, 556
BssECI	CCNNGG	2 cut(s)	105, 342
BssMI	GATC	2 cut(s)	3, 788
BssSI	CACGAG	1 cut(s)	257
BssT1I	CCWWGG	2 cut(s)	105, 342
Bst2BI	CACGAG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	4 cut(s)	146, 244, 678, 738
BstC8I	GCNNGC	2 cut(s)	38, 460
BstDEI	CTNAG	2 cut(s)	203, 454
BstDSI	CCRYGG	2 cut(s)	105, 342
BstF5I	GGATG	1 cut(s)	511
BstFNI	CGCG	2 cut(s)	293, 793
BstHHI	GCGC	2 cut(s)	272, 280
BstKTI	GATC	2 cut(s)	6, 791
BstMAI	GTCTC	2 cut(s)	457, 529
BstMBI	GATC	2 cut(s)	3, 788
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 85, 129, 188, 328, 485
BstNSI	RCATGY	2 cut(s)	256, 398
BstSCI	CCNGG	1 cut(s)	510
BstSFI	CTRYAG	1 cut(s)	526
BstUI	CGCG	2 cut(s)	293, 793
BstV1I	GCAGC	3 cut(s)	211, 219, 644
BstV2I	GAAGAC	1 cut(s)	602
BsuRI	GGCC	5 cut(s)	132, 191, 223, 524, 672
BtgI	CCRYGG	2 cut(s)	105, 342
BtgZI	GCGATG	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	511
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	2 cut(s)	486, 518
Cac8I	GCNNGC	2 cut(s)	38, 460
CaiI	CAGNNNCTG	1 cut(s)	331
CfoI	GCGC	2 cut(s)	272, 280
Cfr13I	GGNCC	2 cut(s)	90, 109
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	709
CviQI	GTAC	1 cut(s)	709
DdeI	CTNAG	2 cut(s)	203, 454
DpnI	GATC	2 cut(s)	5, 790
DpnII	GATC	2 cut(s)	3, 788
DraI	TTTAAA	1 cut(s)	246
DriI	GACNNNNNGTC	1 cut(s)	53
EaeI	YGGCCR	2 cut(s)	221, 670
Eam1104I	CTCTTC	4 cut(s)	146, 244, 678, 738
Eam1105I	GACNNNNNGTC	1 cut(s)	53
EarI	CTCTTC	4 cut(s)	146, 244, 678, 738
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	2 cut(s)	105, 342
Eco147I	AGGCCT	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	90, 109
Eco53kI	GAGCTC	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	79
EcoT14I	CCWWGG	2 cut(s)	105, 342
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	2 cut(s)	105, 342
FaqI	GGGAC	1 cut(s)	369
FauI	CCCGC	1 cut(s)	41
FauNDI	CATATG	1 cut(s)	266
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	4 cut(s)	28, 200, 208, 633
FokI	GGATG	1 cut(s)	518
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	4 cut(s)	28, 200, 208, 633
FspAI	RTGCGCAY	1 cut(s)	279
FspBI	CTAG	1 cut(s)	419
FspI	TGCGCA	1 cut(s)	279
GlaI	GCGC	2 cut(s)	271, 279
GluI	GCNGC	4 cut(s)	28, 200, 208, 633
HaeIII	GGCC	5 cut(s)	132, 191, 223, 524, 672
HapII	CCGG	1 cut(s)	511
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	2 cut(s)	272, 280
Hin6I	GCGC	2 cut(s)	270, 278
HinP1I	GCGC	2 cut(s)	270, 278
HinfI	GANTC	6 cut(s)	17, 48, 347, 432, 576, 746
HpaII	CCGG	1 cut(s)	511
HphI	GGTGA	2 cut(s)	43, 385
Hpy166II	GTNNAC	3 cut(s)	44, 112, 376
Hpy188I	TCNGA	3 cut(s)	85, 327, 392
Hpy8I	GTNNAC	3 cut(s)	44, 112, 376
HpyAV	CCTTC	2 cut(s)	495, 760
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	5 cut(s)	67, 256, 398, 448, 560
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 85, 129, 188, 328, 485
HpyF3I	CTNAG	2 cut(s)	203, 454
HspAI	GCGC	2 cut(s)	270, 278
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 788
LmnI	GCTCC	5 cut(s)	76, 85, 393, 589, 611
LpnPI	CCDG	8 cut(s)	37, 286, 317, 472, 506, 524, 524, 537
Lsp1109I	GCAGC	3 cut(s)	211, 219, 644
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	1 cut(s)	419
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	2 cut(s)	5, 790
MbiI	CCGCTC	1 cut(s)	88
MboI	GATC	2 cut(s)	3, 788
MboII	GAAGA	7 cut(s)	163, 231, 484, 607, 674, 695, 755
MhlI	GDGCHC	2 cut(s)	81, 390
MlsI	TGGCCA	1 cut(s)	672
MluCI	AATT	2 cut(s)	216, 617
MluNI	TGGCCA	1 cut(s)	672
MlyI	GAGTC	5 cut(s)	26, 42, 356, 426, 755
MmeI	TCCRAC	1 cut(s)	415
Mox20I	TGGCCA	1 cut(s)	672
MscI	TGGCCA	1 cut(s)	672
MseI	TTAA	1 cut(s)	245
Msp20I	TGGCCA	1 cut(s)	672
MspA1I	CMGCKG	1 cut(s)	635
MspI	CCGG	1 cut(s)	511
MspR9I	CCNGG	1 cut(s)	512
MvnI	CGCG	2 cut(s)	293, 793
MwoI	GCNNNNNNNGC	6 cut(s)	33, 85, 129, 188, 328, 485
NciI	CCSGG	1 cut(s)	512
NcoI	CCATGG	2 cut(s)	105, 342
NdeI	CATATG	1 cut(s)	266
NdeII	GATC	2 cut(s)	3, 788
NlaIV	GGNNCC	3 cut(s)	31, 340, 442
NmuCI	GTSAC	1 cut(s)	97
NsbI	TGCGCA	1 cut(s)	279
NspI	RCATGY	2 cut(s)	256, 398
PceI	AGGCCT	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 255
PfeI	GAWTC	1 cut(s)	576
PkrI	GCNGC	4 cut(s)	29, 201, 209, 634
PleI	GAGTC	5 cut(s)	25, 42, 355, 426, 754
PpsI	GAGTC	5 cut(s)	25, 42, 355, 426, 754
Psp124BI	GAGCTC	1 cut(s)	81
PspN4I	GGNNCC	3 cut(s)	31, 340, 442
PspPI	GGNCC	2 cut(s)	90, 109
PstNI	CAGNNNCTG	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	1 cut(s)	710
RsaNI	GTAC	1 cut(s)	709
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	4 cut(s)	28, 200, 208, 633
Sau3AI	GATC	2 cut(s)	3, 788
Sau96I	GGNCC	2 cut(s)	90, 109
SchI	GAGTC	5 cut(s)	26, 42, 356, 426, 755
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	2 cut(s)	81, 390
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	526
SinI	GGWCC	2 cut(s)	90, 109
Sse9I	AATT	2 cut(s)	216, 617
SseBI	AGGCCT	1 cut(s)	191
SsiI	CCGC	6 cut(s)	27, 34, 88, 231, 291, 793
SspMI	CTAG	1 cut(s)	419
SstI	GAGCTC	1 cut(s)	81
StuI	AGGCCT	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	2 cut(s)	105, 342
TaaI	ACNGT	1 cut(s)	55
TaqI	TCGA	2 cut(s)	15, 186
TasI	AATT	2 cut(s)	216, 617
TatI	WGTACW	1 cut(s)	708
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	1 cut(s)	576
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	2 cut(s)	486, 525
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	3 cut(s)	199, 207, 632
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	2 cut(s)	568, 696
TspRI	CASTG	2 cut(s)	486, 525
VpaK11BI	GGWCC	2 cut(s)	90, 109
XapI	RAATTY	1 cut(s)	216
XceI	RCATGY	2 cut(s)	256, 398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	349
XspI	CTAG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.