Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004570

Physical Location & Seq

Genomic Coordinates Forward (+)

51601325 .. 51602275

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCGCCCGCCCCGCAACCGGCGACCACCCCGCCCATGAAGGCCACTTCGAATGGATCATTTCAGGGCGAAAATCCACTTGATTACACTCTTCCCTTACTCATCGTCCAGATCATCTTAGTCGTGGGCGGATGTCTGCTGGGGCCCTCCGCATTCAGGAGGAGCAAGACCTTTCTACACACGATTTTCCCGCCAAAAGGCATGACCATGCTAGGTACGGTAGCCAACATCAATCTCTATTTCTTCTTCTTCCTCGTCGGCCTAGAGCTCGACATTAACGCCATCCGCCACACCGGAAAGAAGTCCCTCGGCATCGCCCTCTGCGAGATCACCCTCCCCTTCGTCCTCGGCATCGGCACCTCCGAAGCCCTACGCGCCACCGTCTCGAAAGGCATGAAACAAGGCCCCTTCCTCTTCTTCAACGGCGTCGCCCTCTCCATCACTGCCTTCCCCGTCCTGGCCCGCATCCTTGCCGAGCTCAAGCTCCTCACCACCGATGTCGGCCGCATTGCCATGTGGCCCATGTTCATACATCGACCAGAATTAGAAGCAAGAGTTGAGGCCACAGCAAGAACGTGCACCTTGAATCAGAAGGGTGGTCCTTTATTGCAGGACCTCGATCTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0031410 GO:0031982 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

209

Amino Acids

22.6

Weight (kDa)

9.33

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	37 - 171	6.4e-12	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17630 AT3G17630
fragaria_vesca	FvH4_4g21880
malus_domestica	MD13G1136000.v1.1 MD16G1131400.v1.1
prunus_persica	Prupe.1G209400_v2.0.a1
pyrus_communis	pycom16g11580
rosa_chinensis	RchiOBHm_Chr3g0483861
rosa_laevigata	RLG00000007178 RLG00000023257
rosa_multiflora	Rmu_co8183874.1_g000001 Rmu_co8462775.1_g000001 Rmu_sc0004940.1_g000012 Rmu_sc0005901.1_g000001 Rmu_sc0009599.1_g000012
rosa_roxburghii	Rroxscaffold_5G00369850 Rroxscaffold_6G00398090
rosa_rugosa	Rorug03G0208200.1 Rorug03G0208300 Rorug04G0222700 Rorug04G0222800
rosa_samantha	Rh3AG257000 Rh3BG293400 Rh3CG291700 Rh3DG286700 Rh4AG279900 Rh4AG280100 Rh4BG285300 Rh4BG285500 Rh4CG300900
rosa_wichuraiana	Rw3G023230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 356
AccII	CGCG	1 cut(s)	375
AciI	CCGC	9 cut(s)	9, 14, 32, 129, 150, 191, 286, 463, 505
AclWI	GGATC	1 cut(s)	64
AcoI	YGGCCR	1 cut(s)	502
AcyI	GRCGYC	2 cut(s)	5, 426
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	4 cut(s)	19, 156, 197, 457
AgsI	TTSAA	2 cut(s)	421, 586
AjnI	CCWGG	1 cut(s)	456
AluBI	AGCT	3 cut(s)	268, 478, 484
AluI	AGCT	3 cut(s)	268, 478, 484
Alw21I	GWGCWC	3 cut(s)	270, 480, 581
Alw26I	GTCTC	1 cut(s)	388
Alw44I	GTGCAC	1 cut(s)	577
AlwI	GGATC	1 cut(s)	64
AoxI	GGCC	8 cut(s)	42, 143, 259, 403, 459, 502, 518, 561
ApaI	GGGCCC	1 cut(s)	147
ApaLI	GTGCAC	1 cut(s)	577
AspLEI	GCGC	2 cut(s)	7, 377
AspS9I	GGNCC	7 cut(s)	143, 144, 404, 460, 519, 599, 613
AsuHPI	GGTGA	2 cut(s)	322, 481
AsuII	TTCGAA	1 cut(s)	50
AvaII	GGWCC	2 cut(s)	599, 613
BaeGI	GKGCMC	2 cut(s)	147, 581
BanI	GGYRCC	2 cut(s)	4, 356
BanII	GRGCYC	3 cut(s)	147, 270, 480
Bbv12I	GWGCWC	3 cut(s)	270, 480, 581
BccI	CCATC	2 cut(s)	290, 446
BceAI	ACGGC	1 cut(s)	439
BciT130I	CCWGG	1 cut(s)	458
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	2 cut(s)	212, 263
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	1 cut(s)	505
BlsI	GCNGC	1 cut(s)	506
Bme1390I	CCNGG	1 cut(s)	458
Bme18I	GGWCC	2 cut(s)	599, 613
BmgT120I	GGNCC	7 cut(s)	143, 144, 404, 460, 519, 599, 613
BmiI	GGNNCC	5 cut(s)	6, 144, 145, 358, 406
BmrFI	CCNGG	1 cut(s)	458
BmsI	GCATC	3 cut(s)	321, 360, 474
Bpu14I	TTCGAA	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	464
BsaHI	GRCGYC	2 cut(s)	5, 426
BsaJI	CCNNGG	2 cut(s)	307, 346
BsaWI	WCCGGW	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 156, 197, 457
Bse118I	RCCGGY	1 cut(s)	19
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	458
BseDI	CCNNGG	2 cut(s)	307, 346
BseGI	GGATG	3 cut(s)	137, 282, 465
BseLI	CCNNNNNNNGG	4 cut(s)	19, 156, 197, 457
BseMI	GCAATG	1 cut(s)	507
BseRI	GAGGAG	2 cut(s)	175, 476
BseSI	GKGCMC	2 cut(s)	147, 581
BseX3I	CGGCCG	1 cut(s)	502
BseYI	CCCAGC	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	375
Bsh1285I	CGRYCG	1 cut(s)	505
BshFI	GGCC	8 cut(s)	44, 145, 261, 405, 461, 504, 520, 563
BshNI	GGYRCC	2 cut(s)	4, 356
BsiEI	CGRYCG	1 cut(s)	505
BsiHKAI	GWGCWC	3 cut(s)	270, 480, 581
BsiSI	CCGG	2 cut(s)	20, 294
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	4 cut(s)	19, 156, 197, 457
BsmAI	GTCTC	1 cut(s)	388
BsmBI	CGTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	289
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	8 cut(s)	44, 145, 261, 405, 461, 504, 520, 563
Bsp119I	TTCGAA	1 cut(s)	50
Bsp120I	GGGCCC	1 cut(s)	143
Bsp1286I	GDGCHC	4 cut(s)	147, 270, 480, 581
Bsp143I	GATC	4 cut(s)	56, 111, 327, 619
BspACI	CCGC	9 cut(s)	9, 14, 32, 129, 150, 191, 286, 463, 505
BspANI	GGCC	8 cut(s)	44, 145, 261, 405, 461, 504, 520, 563
BspFNI	CGCG	1 cut(s)	375
BspLI	GGNNCC	5 cut(s)	6, 144, 145, 358, 406
BspPI	GGATC	1 cut(s)	64
BspT104I	TTCGAA	1 cut(s)	50
BspT107I	GGYRCC	2 cut(s)	4, 356
BsrDI	GCAATG	1 cut(s)	507
BsrFI	RCCGGY	1 cut(s)	19
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	307, 346
BssMI	GATC	4 cut(s)	56, 111, 327, 619
BssNI	GRCGYC	2 cut(s)	5, 426
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	2 cut(s)	220, 382
Bst6I	CTCTTC	2 cut(s)	96, 419
BstACI	GRCGYC	2 cut(s)	5, 426
BstBI	TTCGAA	1 cut(s)	50
BstC8I	GCNNGC	2 cut(s)	9, 463
BstDEI	CTNAG	1 cut(s)	118
BstF5I	GGATG	3 cut(s)	137, 282, 465
BstFNI	CGCG	1 cut(s)	375
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 377
BstKTI	GATC	4 cut(s)	59, 114, 330, 622
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	4 cut(s)	56, 111, 327, 619
BstMCI	CGRYCG	1 cut(s)	505
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 374
BstNI	CCWGG	1 cut(s)	458
BstSCI	CCNGG	1 cut(s)	456
BstSLI	GKGCMC	2 cut(s)	147, 581
BstUI	CGCG	1 cut(s)	375
BstZI	CGGCCG	1 cut(s)	502
BsuRI	GGCC	8 cut(s)	44, 145, 261, 405, 461, 504, 520, 563
BtgZI	GCGATG	1 cut(s)	298
BtsCI	GGATG	3 cut(s)	137, 282, 465
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	2 cut(s)	9, 463
CfoI	GCGC	2 cut(s)	7, 377
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	7 cut(s)	143, 144, 404, 460, 519, 599, 613
CseI	GACGC	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	6 cut(s)	37, 202, 208, 394, 514, 523
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	1 cut(s)	118
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	4 cut(s)	58, 113, 329, 621
DpnII	GATC	4 cut(s)	56, 111, 327, 619
EaeI	YGGCCR	1 cut(s)	502
EagI	CGGCCG	1 cut(s)	502
Eam1104I	CTCTTC	2 cut(s)	96, 419
EarI	CTCTTC	2 cut(s)	96, 419
EciI	GGCGGA	2 cut(s)	144, 275
Ecl136II	GAGCTC	2 cut(s)	268, 478
EclXI	CGGCCG	1 cut(s)	502
Eco24I	GRGCYC	3 cut(s)	147, 270, 480
Eco47I	GGWCC	2 cut(s)	599, 613
Eco52I	CGGCCG	1 cut(s)	502
Eco53kI	GAGCTC	2 cut(s)	268, 478
EcoICRI	GAGCTC	2 cut(s)	268, 478
EcoO109I	RGGNCCY	4 cut(s)	143, 144, 404, 613
EcoRII	CCWGG	1 cut(s)	456
EcoT38I	GRGCYC	3 cut(s)	147, 270, 480
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	6 cut(s)	40, 205, 211, 397, 517, 526
FaiI	YATR	7 cut(s)	38, 203, 209, 395, 515, 524, 530
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	6 cut(s)	36, 201, 207, 393, 513, 522
FauI	CCCGC	5 cut(s)	16, 21, 39, 198, 470
Fnu4HI	GCNGC	1 cut(s)	505
FokI	GGATG	3 cut(s)	144, 269, 452
FriOI	GRGCYC	3 cut(s)	147, 270, 480
Fsp4HI	GCNGC	1 cut(s)	505
FspBI	CTAG	2 cut(s)	212, 263
GlaI	GCGC	2 cut(s)	6, 376
GluI	GCNGC	1 cut(s)	505
GsaI	CCCAGC	1 cut(s)	143
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	8 cut(s)	44, 145, 261, 405, 461, 504, 520, 563
HapII	CCGG	2 cut(s)	20, 294
HgaI	GACGC	1 cut(s)	415
HhaI	GCGC	2 cut(s)	7, 377
Hin1I	GRCGYC	2 cut(s)	5, 426
Hin1II	CATG	6 cut(s)	40, 205, 211, 397, 517, 526
Hin6I	GCGC	2 cut(s)	5, 375
HinP1I	GCGC	2 cut(s)	5, 375
HinfI	GANTC	1 cut(s)	586
HpaII	CCGG	2 cut(s)	20, 294
HphI	GGTGA	2 cut(s)	322, 481
Hpy166II	GTNNAC	1 cut(s)	579
Hpy188I	TCNGA	2 cut(s)	364, 591
Hpy188III	TCNNGA	3 cut(s)	109, 157, 385
Hpy8I	GTNNAC	1 cut(s)	579
Hpy99I	CGWCG	2 cut(s)	260, 431
HpyAV	CCTTC	5 cut(s)	34, 349, 418, 457, 586
HpyCH4III	ACNGT	2 cut(s)	220, 382
HpyCH4IV	ACGT	1 cut(s)	575
HpyCH4V	TGCA	2 cut(s)	579, 610
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 374
HpyF3I	CTNAG	1 cut(s)	118
HpySE526I	ACGT	1 cut(s)	575
Hsp92I	GRCGYC	2 cut(s)	5, 426
Hsp92II	CATG	6 cut(s)	40, 205, 211, 397, 517, 526
HspAI	GCGC	2 cut(s)	5, 375
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	4 cut(s)	56, 111, 327, 619
LmnI	GCTCC	2 cut(s)	162, 489
LweI	GCATC	3 cut(s)	321, 360, 474
MaeI	CTAG	2 cut(s)	212, 263
MaeII	ACGT	1 cut(s)	575
MalI	GATC	4 cut(s)	58, 113, 329, 621
MboI	GATC	4 cut(s)	56, 111, 327, 619
MboII	GAAGA	6 cut(s)	83, 235, 238, 241, 406, 409
MhlI	GDGCHC	4 cut(s)	147, 270, 480, 581
MluCI	AATT	1 cut(s)	542
Mly113I	GGCGCC	1 cut(s)	5
MseI	TTAA	2 cut(s)	276, 628
MslI	CAYNNNNRTG	2 cut(s)	206, 512
MspI	CCGG	2 cut(s)	20, 294
MspR9I	CCNGG	1 cut(s)	458
Mva1269I	GAATGC	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	458
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	2 cut(s)	13, 374
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	4 cut(s)	56, 111, 327, 619
NlaIII	CATG	6 cut(s)	40, 205, 211, 397, 517, 526
NlaIV	GGNNCC	5 cut(s)	6, 144, 145, 358, 406
NmeAIII	GCCGAG	3 cut(s)	288, 327, 499
NspV	TTCGAA	1 cut(s)	50
PcsI	WCGNNNNNNNCGW	2 cut(s)	321, 360
PctI	GAATGC	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	586
PkrI	GCNGC	1 cut(s)	506
PluTI	GGCGCC	1 cut(s)	8
PpuMI	RGGWCCY	1 cut(s)	613
Psp124BI	GAGCTC	2 cut(s)	270, 480
Psp5II	RGGWCCY	1 cut(s)	613
Psp6I	CCWGG	1 cut(s)	456
PspFI	CCCAGC	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	456
PspN4I	GGNNCC	5 cut(s)	6, 144, 145, 358, 406
PspOMI	GGGCCC	1 cut(s)	143
PspPI	GGNCC	7 cut(s)	143, 144, 404, 460, 519, 599, 613
PspPPI	RGGWCCY	1 cut(s)	613
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
RseI	CAYNNNNRTG	2 cut(s)	206, 512
SacI	GAGCTC	2 cut(s)	270, 480
SaqAI	TTAA	2 cut(s)	276, 628
SatI	GCNGC	1 cut(s)	505
Sau3AI	GATC	4 cut(s)	56, 111, 327, 619
Sau96I	GGNCC	7 cut(s)	143, 144, 404, 460, 519, 599, 613
ScrFI	CCNGG	1 cut(s)	458
SduI	GDGCHC	4 cut(s)	147, 270, 480, 581
SetI	ASST	9 cut(s)	173, 217, 270, 362, 480, 486, 578, 584, 618
SfaNI	GCATC	3 cut(s)	321, 360, 474
SfoI	GGCGCC	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	50
SinI	GGWCC	2 cut(s)	599, 613
SmiMI	CAYNNNNRTG	2 cut(s)	206, 512
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	1 cut(s)	542
SsiI	CCGC	9 cut(s)	9, 14, 32, 129, 150, 191, 286, 463, 505
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	212, 263
SstI	GAGCTC	2 cut(s)	270, 480
StyD4I	CCNGG	1 cut(s)	456
TaaI	ACNGT	2 cut(s)	220, 382
TaiI	ACGT	1 cut(s)	578
TaqI	TCGA	5 cut(s)	50, 270, 386, 535, 618
TasI	AATT	1 cut(s)	542
TauI	GCSGC	1 cut(s)	507
TfiI	GAWTC	1 cut(s)	586
Tru1I	TTAA	2 cut(s)	276, 628
Tru9I	TTAA	2 cut(s)	276, 628
TscAI	CASTG	1 cut(s)	448
TspDTI	ATGAA	3 cut(s)	53, 410, 517
TspRI	CASTG	1 cut(s)	448
VneI	GTGCAC	1 cut(s)	577
VpaK11BI	GGWCC	2 cut(s)	599, 613
XspI	CTAG	2 cut(s)	212, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.