Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8183874.1

Orthogroup ID

OG0004570

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 689

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8183874.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 689 bp

atcaccctccccttcgtcctcggcatcggcacctccgaagccctacgcgccactgtctcgaaaggcgtgaaacaaggccccttcctcgttttcaacggcgtcgccctctccatcaccgccttcccagtcctcgcccgcatcctcgctgagctcaagctcctcaccaccgacgtcggccgcatcgccatgtccgccgccgccgtcaacgacgtcgccgcctggatccttctagccctcgccatcgccctcaccggcaacaacacctccccgctcgtctccgtctgggtcctcctctgcggtgccggcttcgtcgggttcgccgtcgtcgccatccgccccatactggtcatgatggcgcgaaggtcccaggagggcgaacccgtgaaggagctctacatctgcatcactctctcgttggttttggccgcggggttcgtgacggacacgattgggatacacgcgctgttcggcgcgttcgtggtggggatcataatgccgaaggagggtccgttcgcgggtgtgttgatagagaagattgaggacctggtttcggggcttctgttgccgctttattttgtatccagtgggctcaagactaattttttgactataagcgggggggtgtcgtggggtatgctggtgctggtgatatgtacagcgtcgtttgggaagatcgtcgggactgtcac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0031410 GO:0031982 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

230

Amino Acids

23.93

Weight (kDa)

8.53

Isoelectric Point (pI)

30.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17630 AT3G17630
fragaria_vesca	FvH4_4g21880
malus_domestica	MD13G1136000.v1.1 MD16G1131400.v1.1
prunus_persica	Prupe.1G209400_v2.0.a1
pyrus_communis	pycom16g11580
rosa_chinensis	RchiOBHm_Chr3g0483861
rosa_laevigata	RLG00000007178 RLG00000023257
rosa_multiflora	Rmu_co8183874.1_g000001 Rmu_co8462775.1_g000001 Rmu_sc0004940.1_g000012 Rmu_sc0005901.1_g000001 Rmu_sc0009599.1_g000012
rosa_roxburghii	Rroxscaffold_5G00369850 Rroxscaffold_6G00398090
rosa_rugosa	Rorug03G0208200.1 Rorug03G0208300 Rorug04G0222700 Rorug04G0222800
rosa_samantha	Rh3AG257000 Rh3BG293400 Rh3CG291700 Rh3DG286700 Rh4AG279900 Rh4AG280100 Rh4BG285300 Rh4BG285500 Rh4CG300900
rosa_wichuraiana	Rw3G023230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	174, 213
AccB1I	GGYRCC	2 cut(s)	29, 299
AccBSI	CCGCTC	1 cut(s)	271
AccII	CGCG	6 cut(s)	48, 358, 428, 461, 473, 515
AclWI	GGATC	3 cut(s)	217, 230, 494
AcoI	YGGCCR	2 cut(s)	175, 423
AcyI	GRCGYC	3 cut(s)	99, 171, 210
AfaI	GTAC	1 cut(s)	655
AfiI	CCNNNNNNNGG	4 cut(s)	343, 503, 515, 550
AgsI	TTSAA	1 cut(s)	94
AjnI	CCWGG	3 cut(s)	218, 366, 543
AloI	GAACNNNNNNTCC	2 cut(s)	494, 526
AluBI	AGCT	3 cut(s)	151, 157, 391
AluI	AGCT	3 cut(s)	151, 157, 391
Alw21I	GWGCWC	2 cut(s)	153, 393
Alw26I	GTCTC	2 cut(s)	61, 280
AlwI	GGATC	3 cut(s)	217, 230, 494
AoxI	GGCC	3 cut(s)	76, 175, 423
ArsI	GACNNNNNNTTYG	2 cut(s)	586, 618
AspLEI	GCGC	4 cut(s)	50, 358, 463, 473
AspS9I	GGNCC	5 cut(s)	77, 286, 363, 506, 541
AsuHPI	GGTGA	4 cut(s)	106, 154, 241, 658
AvaII	GGWCC	4 cut(s)	286, 363, 506, 541
BamHI	GGATCC	1 cut(s)	222
BanI	GGYRCC	2 cut(s)	29, 299
BanII	GRGCYC	3 cut(s)	153, 393, 591
BarI	GAAGNNNNNNTAC	2 cut(s)	377, 409
Bbv12I	GWGCWC	2 cut(s)	153, 393
BccI	CCATC	4 cut(s)	119, 248, 338, 346
BceAI	ACGGC	3 cut(s)	112, 185, 305
BciT130I	CCWGG	3 cut(s)	220, 368, 545
BciVI	GTATCC	2 cut(s)	447, 589
BcoDI	GTCTC	2 cut(s)	61, 280
BfaI	CTAG	1 cut(s)	230
BfuI	GTATCC	2 cut(s)	447, 589
BisI	GCNGC	6 cut(s)	178, 195, 198, 216, 426, 566
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	6 cut(s)	179, 196, 199, 217, 427, 567
Bme1390I	CCNGG	3 cut(s)	220, 368, 545
Bme18I	GGWCC	4 cut(s)	286, 363, 506, 541
BmgT120I	GGNCC	5 cut(s)	77, 286, 363, 506, 541
BmiI	GGNNCC	7 cut(s)	31, 79, 224, 287, 301, 365, 507
BmrFI	CCNGG	3 cut(s)	220, 368, 545
BmrI	ACTGGG	1 cut(s)	119
BmsI	GCATC	4 cut(s)	33, 147, 189, 411
BmuI	ACTGGG	1 cut(s)	119
Bpu1102I	GCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	2 cut(s)	137, 575
BsaHI	GRCGYC	3 cut(s)	99, 171, 210
BsaJI	CCNNGG	3 cut(s)	19, 366, 426
BsaXI	ACNNNNNCTCC	4 cut(s)	248, 278, 494, 524
Bsc4I	CCNNNNNNNGG	4 cut(s)	343, 503, 515, 550
Bse118I	RCCGGY	2 cut(s)	251, 302
Bse1I	ACTGG	3 cut(s)	125, 348, 582
BseBI	CCWGG	3 cut(s)	220, 368, 545
BseDI	CCNNGG	3 cut(s)	19, 366, 426
BseGI	GGATG	2 cut(s)	138, 330
BseLI	CCNNNNNNNGG	4 cut(s)	343, 503, 515, 550
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	3 cut(s)	125, 348, 582
BseRI	GAGGAG	2 cut(s)	149, 281
BseX3I	CGGCCG	1 cut(s)	175
Bsh1236I	CGCG	6 cut(s)	48, 358, 428, 461, 473, 515
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	3 cut(s)	78, 177, 425
BshNI	GGYRCC	2 cut(s)	29, 299
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	2 cut(s)	153, 393
BsiSI	CCGG	2 cut(s)	252, 303
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	4 cut(s)	343, 503, 515, 550
BsmAI	GTCTC	2 cut(s)	61, 280
BsmBI	CGTCTC	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	3 cut(s)	78, 177, 425
Bsp1286I	GDGCHC	3 cut(s)	153, 393, 591
Bsp1407I	TGTACA	1 cut(s)	653
Bsp143I	GATC	3 cut(s)	222, 486, 672
Bsp1720I	GCTNAGC	1 cut(s)	147
BspANI	GGCC	3 cut(s)	78, 177, 425
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	6 cut(s)	48, 358, 428, 461, 473, 515
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	7 cut(s)	31, 79, 224, 287, 301, 365, 507
BspPI	GGATC	3 cut(s)	217, 230, 494
BspT107I	GGYRCC	2 cut(s)	29, 299
BsrBI	CCGCTC	1 cut(s)	271
BsrFI	RCCGGY	2 cut(s)	251, 302
BsrGI	TGTACA	1 cut(s)	653
BsrI	ACTGG	3 cut(s)	125, 348, 582
BssAI	RCCGGY	2 cut(s)	251, 302
BssECI	CCNNGG	3 cut(s)	19, 366, 426
BssMI	GATC	3 cut(s)	222, 486, 672
BssNI	GRCGYC	3 cut(s)	99, 171, 210
Bst2UI	CCWGG	3 cut(s)	220, 368, 545
Bst4CI	ACNGT	2 cut(s)	55, 685
BstACI	GRCGYC	3 cut(s)	99, 171, 210
BstAUI	TGTACA	1 cut(s)	653
BstC8I	GCNNGC	2 cut(s)	136, 304
BstDEI	CTNAG	1 cut(s)	147
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	2 cut(s)	138, 330
BstFNI	CGCG	6 cut(s)	48, 358, 428, 461, 473, 515
BstHHI	GCGC	4 cut(s)	50, 358, 463, 473
BstKTI	GATC	3 cut(s)	225, 489, 675
BstMAI	GTCTC	2 cut(s)	61, 280
BstMBI	GATC	3 cut(s)	222, 486, 672
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 191, 303, 326, 562
BstNI	CCWGG	3 cut(s)	220, 368, 545
BstSCI	CCNGG	3 cut(s)	218, 366, 543
BstUI	CGCG	6 cut(s)	48, 358, 428, 461, 473, 515
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
BstZI	CGGCCG	1 cut(s)	175
BsuI	GTATCC	2 cut(s)	447, 589
BsuRI	GGCC	3 cut(s)	78, 177, 425
BtgI	CCRYGG	1 cut(s)	426
BtgZI	GCGATG	2 cut(s)	166, 226
BtsCI	GGATG	2 cut(s)	138, 330
BtsIMutI	CAGTG	2 cut(s)	51, 589
Cac8I	GCNNGC	2 cut(s)	136, 304
CciI	TCATGA	1 cut(s)	348
CfoI	GCGC	4 cut(s)	50, 358, 463, 473
Cfr10I	RCCGGY	2 cut(s)	251, 302
Cfr13I	GGNCC	5 cut(s)	77, 286, 363, 506, 541
Cfr42I	CCGCGG	1 cut(s)	429
CseI	GACGC	2 cut(s)	88, 648
CsiI	ACCWGGT	1 cut(s)	543
Csp6I	GTAC	1 cut(s)	654
CviAII	CATG	2 cut(s)	187, 349
CviQI	GTAC	1 cut(s)	654
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	3 cut(s)	224, 488, 674
DpnII	GATC	3 cut(s)	222, 486, 672
EaeI	YGGCCR	2 cut(s)	175, 423
EagI	CGGCCG	1 cut(s)	175
EciI	GGCGGA	2 cut(s)	181, 323
Ecl136II	GAGCTC	2 cut(s)	151, 391
EclXI	CGGCCG	1 cut(s)	175
Eco24I	GRGCYC	3 cut(s)	153, 393, 591
Eco47I	GGWCC	4 cut(s)	286, 363, 506, 541
Eco52I	CGGCCG	1 cut(s)	175
Eco53kI	GAGCTC	2 cut(s)	151, 391
EcoICRI	GAGCTC	2 cut(s)	151, 391
EcoO109I	RGGNCCY	4 cut(s)	77, 286, 363, 541
EcoRII	CCWGG	3 cut(s)	218, 366, 543
EcoT38I	GRGCYC	3 cut(s)	153, 393, 591
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	2 cut(s)	190, 352
FaiI	YATR	7 cut(s)	188, 341, 350, 491, 611, 635, 652
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	2 cut(s)	186, 348
FauI	CCCGC	5 cut(s)	143, 276, 421, 508, 608
Fnu4HI	GCNGC	6 cut(s)	178, 195, 198, 216, 426, 566
FokI	GGATG	2 cut(s)	125, 317
FriOI	GRGCYC	3 cut(s)	153, 393, 591
Fsp4HI	GCNGC	6 cut(s)	178, 195, 198, 216, 426, 566
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	4 cut(s)	49, 357, 462, 472
GluI	GCNGC	6 cut(s)	178, 195, 198, 216, 426, 566
HaeIII	GGCC	3 cut(s)	78, 177, 425
HapII	CCGG	2 cut(s)	252, 303
HgaI	GACGC	2 cut(s)	88, 648
HhaI	GCGC	4 cut(s)	50, 358, 463, 473
Hin1I	GRCGYC	3 cut(s)	99, 171, 210
Hin1II	CATG	2 cut(s)	190, 352
Hin6I	GCGC	4 cut(s)	48, 356, 461, 471
HinP1I	GCGC	4 cut(s)	48, 356, 461, 471
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HpaII	CCGG	2 cut(s)	252, 303
HphI	GGTGA	4 cut(s)	106, 154, 241, 658
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	5 cut(s)	58, 349, 436, 592, 679
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	7 cut(s)	22, 91, 130, 236, 354, 379, 493
HpyCH4III	ACNGT	2 cut(s)	55, 685
HpyCH4IV	ACGT	2 cut(s)	171, 210
HpyCH4V	TGCA	1 cut(s)	402
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 191, 303, 326, 562
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	2 cut(s)	171, 210
Hsp92I	GRCGYC	3 cut(s)	99, 171, 210
Hsp92II	CATG	2 cut(s)	190, 352
HspAI	GCGC	4 cut(s)	48, 356, 461, 471
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
KspI	CCGCGG	1 cut(s)	429
Kzo9I	GATC	3 cut(s)	222, 486, 672
LmnI	GCTCC	2 cut(s)	162, 388
LweI	GCATC	4 cut(s)	33, 147, 189, 411
MabI	ACCWGGT	1 cut(s)	543
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	2 cut(s)	171, 210
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	3 cut(s)	224, 488, 674
MbiI	CCGCTC	1 cut(s)	271
MboI	GATC	3 cut(s)	222, 486, 672
MboII	GAAGA	2 cut(s)	544, 682
MflI	RGATCY	1 cut(s)	222
MhlI	GDGCHC	3 cut(s)	153, 393, 591
MluCI	AATT	1 cut(s)	598
MroNI	GCCGGC	1 cut(s)	302
MslI	CAYNNNNRTG	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	2 cut(s)	252, 303
MspR9I	CCNGG	3 cut(s)	220, 368, 545
MvaI	CCWGG	3 cut(s)	220, 368, 545
MvnI	CGCG	6 cut(s)	48, 358, 428, 461, 473, 515
MwoI	GCNNNNNNNGC	5 cut(s)	47, 191, 303, 326, 562
NaeI	GCCGGC	1 cut(s)	304
NdeII	GATC	3 cut(s)	222, 486, 672
NgoMIV	GCCGGC	1 cut(s)	302
NlaIII	CATG	2 cut(s)	190, 352
NlaIV	GGNNCC	7 cut(s)	31, 79, 224, 287, 301, 365, 507
NmuCI	GTSAC	1 cut(s)	436
PagI	TCATGA	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	3 cut(s)	33, 318, 474
PdiI	GCCGGC	1 cut(s)	304
PkrI	GCNGC	6 cut(s)	179, 196, 199, 217, 427, 567
PpuMI	RGGWCCY	3 cut(s)	286, 363, 541
Psp124BI	GAGCTC	2 cut(s)	153, 393
Psp5II	RGGWCCY	3 cut(s)	286, 363, 541
Psp6I	CCWGG	3 cut(s)	218, 366, 543
PspGI	CCWGG	3 cut(s)	218, 366, 543
PspN4I	GGNNCC	7 cut(s)	31, 79, 224, 287, 301, 365, 507
PspPI	GGNCC	5 cut(s)	77, 286, 363, 506, 541
PspPPI	RGGWCCY	3 cut(s)	286, 363, 541
PsuI	RGATCY	1 cut(s)	222
RsaI	GTAC	1 cut(s)	655
RsaNI	GTAC	1 cut(s)	654
RseI	CAYNNNNRTG	1 cut(s)	185
SacI	GAGCTC	2 cut(s)	153, 393
SacII	CCGCGG	1 cut(s)	429
SatI	GCNGC	6 cut(s)	178, 195, 198, 216, 426, 566
Sau3AI	GATC	3 cut(s)	222, 486, 672
Sau96I	GGNCC	5 cut(s)	77, 286, 363, 506, 541
ScrFI	CCNGG	3 cut(s)	220, 368, 545
SduI	GDGCHC	3 cut(s)	153, 393, 591
SetI	ASST	9 cut(s)	35, 153, 159, 174, 213, 266, 365, 393, 546
SexAI	ACCWGGT	1 cut(s)	543
SfaNI	GCATC	4 cut(s)	33, 147, 189, 411
Sfr303I	CCGCGG	1 cut(s)	429
SgrBI	CCGCGG	1 cut(s)	429
SinI	GGWCC	4 cut(s)	286, 363, 506, 541
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	2 cut(s)	152, 590
SmoI	CTYRAG	2 cut(s)	152, 590
Sse9I	AATT	1 cut(s)	598
SspMI	CTAG	1 cut(s)	230
SstI	GAGCTC	2 cut(s)	153, 393
StyD4I	CCNGG	3 cut(s)	218, 366, 543
TaaI	ACNGT	2 cut(s)	55, 685
TaiI	ACGT	2 cut(s)	174, 213
TaqI	TCGA	1 cut(s)	59
TasI	AATT	1 cut(s)	598
TatI	WGTACW	1 cut(s)	653
TauI	GCSGC	6 cut(s)	180, 197, 200, 218, 428, 568
TscAI	CASTG	2 cut(s)	58, 589
TseFI	GTSAC	1 cut(s)	436
Tsp45I	GTSAC	1 cut(s)	436
TspGWI	ACGGA	3 cut(s)	268, 455, 498
TspRI	CASTG	2 cut(s)	58, 589
VpaK11BI	GGWCC	4 cut(s)	286, 363, 506, 541
XspI	CTAG	1 cut(s)	230
ZraI	GACGTC	2 cut(s)	172, 211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.