Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008161

Physical Location & Seq

Genomic Coordinates Reverse (-)

64189967 .. 64190463

Gene Structure 497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010207

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCACAATACGTGGGAAGGCTTACGTGACAGCAGAGAGGGAATAGCCGGAGCTGATCGTCGTGCTCGAACTTCGAGGTCGGAAGCGACGACGGCAGTGGAGGAGGCTCGGAGGTGCTTGATGGAGGAGAAGGTGAAGACCGGGAGCGAGGGGGCTGCAGATTTGGCCGGAGATACTCGGGCGGGGGCGTCGTCGCCAGAAGATGGAGTGATGTTTTCACGGTCAATGAGAGGTTATTGTGAGGTGGCGAGGTGGTGGAGGTTGATAATGGCGGTGGCGGCGGAGTCCTTGGCGAAGATCGGCTTTAGAATGCCAGCATTCCTGTTGACGTTTCTCTTGGGCTTGATCGCGTCGGCGTCTGCTTTCTCGGAGACACCAAGTCCTATGATGAGTGTGCGACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.59

Weight (kDa)

7.82

Isoelectric Point (pI)

64.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008161)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g19010
rosa_laevigata	RLG00000010207 RLG00000028896 RLG00000030957
rosa_multiflora	Rmu_sc0000918.1_g000026 Rmu_ssc0000368.1_g000057
rosa_samantha	Rh2BG530700 Rh2CG303600 Rh2DG339700 Rh2DG362700 Rh2DG539700 Rh3BG250000 Rh4DG034400 Rh4DG254100 Rh5BG047900 Rh5BG259600 Rh5CG093100 Rh6BG417800 Rh6CG294300 Rh6CG374600 Rh6DG286300 Rh7AG414300 Rh7BG210000 Rh7DG409900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	203
AccII	CGCG	1 cut(s)	350
AciI	CCGC	4 cut(s)	182, 272, 278, 281
AcoI	YGGCCR	1 cut(s)	165
AcyI	GRCGYC	2 cut(s)	188, 356
AfiI	CCNNNNNNNGG	1 cut(s)	203
AhdI	GACNNNNNGTC	1 cut(s)	378
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	1 cut(s)	365
Ama87I	CYCGRG	1 cut(s)	177
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	1 cut(s)	155
AsuC2I	CCSGG	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	145
AvaI	CYCGRG	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	2 cut(s)	115, 197
BceAI	ACGGC	1 cut(s)	108
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BcnI	CCSGG	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	365
BfmI	CTRYAG	1 cut(s)	156
BisI	GCNGC	2 cut(s)	156, 279
BlsI	GCNGC	2 cut(s)	157, 280
Bme1390I	CCNGG	1 cut(s)	142
BmeRI	GACNNNNNGTC	1 cut(s)	378
BmeT110I	CYCGRG	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	142
BsaAI	YACGTR	2 cut(s)	12, 26
BsaHI	GRCGYC	2 cut(s)	188, 356
BsaJI	CCNNGG	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseRI	GAGGAG	2 cut(s)	116, 140
BseXI	GCAGC	1 cut(s)	142
Bsh1236I	CGCG	1 cut(s)	350
BshFI	GGCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	177
BsiSI	CCGG	3 cut(s)	48, 141, 168
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	365
BsmI	GAATGC	2 cut(s)	315, 317
BsnI	GGCC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	3 cut(s)	55, 297, 345
BspACI	CCGC	4 cut(s)	182, 272, 278, 281
BspANI	GGCC	1 cut(s)	167
BspFNI	CGCG	1 cut(s)	350
BspMAI	CTGCAG	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	3 cut(s)	55, 297, 345
BssNI	GRCGYC	2 cut(s)	188, 356
BssT1I	CCWWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	222
BstACI	GRCGYC	2 cut(s)	188, 356
BstBAI	YACGTR	2 cut(s)	12, 26
BstC8I	GCNNGC	1 cut(s)	315
BstFNI	CGCG	1 cut(s)	350
BstKTI	GATC	3 cut(s)	58, 300, 348
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	3 cut(s)	55, 297, 345
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 164, 278
BstSCI	CCNGG	1 cut(s)	140
BstSFI	CTRYAG	1 cut(s)	156
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	167
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	315
CseI	GACGC	3 cut(s)	177, 339, 345
CviJI	RGCY	8 cut(s)	21, 47, 53, 107, 155, 167, 303, 342
CviKI_1	RGCY	8 cut(s)	21, 47, 53, 107, 155, 167, 303, 342
DpnI	GATC	3 cut(s)	57, 299, 347
DpnII	GATC	3 cut(s)	55, 297, 345
DriI	GACNNNNNGTC	1 cut(s)	378
EaeI	YGGCCR	1 cut(s)	165
Eam1105I	GACNNNNNGTC	1 cut(s)	378
EciI	GGCGGA	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	288
FaiI	YATR	2 cut(s)	386, 403
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FauI	CCCGC	1 cut(s)	175
Fnu4HI	GCNGC	2 cut(s)	156, 279
Fsp4HI	GCNGC	2 cut(s)	156, 279
GluI	GCNGC	2 cut(s)	156, 279
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	3 cut(s)	48, 141, 168
HgaI	GACGC	3 cut(s)	177, 339, 345
Hin1I	GRCGYC	2 cut(s)	188, 356
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HinfI	GANTC	1 cut(s)	284
HpaII	CCGG	3 cut(s)	48, 141, 168
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	3 cut(s)	82, 111, 370
Hpy8I	GTNNAC	1 cut(s)	327
Hpy99I	CGWCG	6 cut(s)	63, 91, 94, 193, 196, 355
HpyAV	CCTTC	2 cut(s)	11, 124
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4IV	ACGT	3 cut(s)	11, 25, 329
HpyCH4V	TGCA	2 cut(s)	4, 158
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 164, 278
HpySE526I	ACGT	3 cut(s)	11, 25, 329
Hsp92I	GRCGYC	2 cut(s)	188, 356
Kzo9I	GATC	3 cut(s)	55, 297, 345
LmnI	GCTCC	2 cut(s)	50, 144
LpnPI	CCDG	6 cut(s)	61, 154, 181, 210, 327, 335
Lsp1109I	GCAGC	1 cut(s)	142
MaeII	ACGT	3 cut(s)	11, 25, 329
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	3 cut(s)	57, 299, 347
MboI	GATC	3 cut(s)	55, 297, 345
MboII	GAAGA	3 cut(s)	148, 212, 307
MhlI	GDGCHC	1 cut(s)	67
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	60
MspI	CCGG	3 cut(s)	48, 141, 168
MspR9I	CCNGG	1 cut(s)	142
Mva1269I	GAATGC	2 cut(s)	315, 317
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	3 cut(s)	92, 164, 278
NciI	CCSGG	1 cut(s)	142
NdeII	GATC	3 cut(s)	55, 297, 345
NmuCI	GTSAC	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	2 cut(s)	64, 86
PctI	GAATGC	2 cut(s)	315, 317
PflMI	CCANNNNNTGG	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	157, 280
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Ppu21I	YACGTR	2 cut(s)	12, 26
PstI	CTGCAG	1 cut(s)	160
SatI	GCNGC	2 cut(s)	156, 279
Sau3AI	GATC	3 cut(s)	55, 297, 345
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	67
SfcI	CTRYAG	1 cut(s)	156
SsiI	CCGC	4 cut(s)	182, 272, 278, 281
StyD4I	CCNGG	1 cut(s)	140
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	222
TaiI	ACGT	3 cut(s)	14, 28, 332
TaqI	TCGA	2 cut(s)	67, 74
TauI	GCSGC	1 cut(s)	281
TscAI	CASTG	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	26
TspRI	CASTG	1 cut(s)	102
Van91I	CCANNNNNTGG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.