Rh6DG286300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0008161
Physical Location & Seq
Reverse (-)
48126807 .. 48126986
180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG286300.1

Sequence Viewer

Length: 180 bp
ATGCATGATACGTGGGAAGGCTTACGTGACAGCAGAGAGGGAGTAGCCGGAGCTGATCGTCCTGCTCGAACTTCGAGGTCGGAAGCGACGACGGCAGTGGAGGAGGCTCGGCGGTGCTTGATGGTGGAGAAGGCAAAGACCGGGAGCGAGGCGGCGGCGGATTCGGCAAAGGGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.31

Weight (kDa)

5.37

Isoelectric Point (pI)

60.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 112, 152, 155, 158
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AsuC2I CCSGG 1 cut(s) 142
BccI CCATC 1 cut(s) 115
BceAI ACGGC 1 cut(s) 108
BcnI CCSGG 1 cut(s) 142
BisI GCNGC 2 cut(s) 153, 156
BlsI GCNGC 2 cut(s) 154, 157
Bme1390I CCNGG 1 cut(s) 142
BmrFI CCNGG 1 cut(s) 142
BpuMI CCSGG 1 cut(s) 142
BsaAI YACGTR 2 cut(s) 12, 26
BseRI GAGGAG 1 cut(s) 116
BsiSI CCGG 2 cut(s) 48, 141
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 4 cut(s) 112, 152, 155, 158
BssMI GATC 1 cut(s) 55
BstBAI YACGTR 2 cut(s) 12, 26
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 92, 164
BstSCI CCNGG 1 cut(s) 140
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
CviAII CATG 1 cut(s) 5
CviJI RGCY 4 cut(s) 21, 47, 53, 107
CviKI_1 RGCY 4 cut(s) 21, 47, 53, 107
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
EciI GGCGGA 1 cut(s) 173
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 8
FaiI YATR 1 cut(s) 6
FatI CATG 1 cut(s) 4
Fnu4HI GCNGC 2 cut(s) 153, 156
Fsp4HI GCNGC 2 cut(s) 153, 156
GluI GCNGC 2 cut(s) 153, 156
HapII CCGG 2 cut(s) 48, 141
Hin1II CATG 1 cut(s) 8
HinfI GANTC 1 cut(s) 161
HpaII CCGG 2 cut(s) 48, 141
Hpy188I TCNGA 1 cut(s) 82
Hpy99I CGWCG 2 cut(s) 91, 94
HpyAV CCTTC 2 cut(s) 11, 124
HpyCH4IV ACGT 2 cut(s) 11, 25
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 164
HpySE526I ACGT 2 cut(s) 11, 25
Hsp92II CATG 1 cut(s) 8
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 2 cut(s) 50, 144
LpnPI CCDG 3 cut(s) 61, 75, 154
MaeII ACGT 2 cut(s) 11, 25
MaeIII GTNAC 1 cut(s) 26
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 5 cut(s) 31, 69, 94, 97, 142
Mph1103I ATGCAT 1 cut(s) 6
MspI CCGG 2 cut(s) 48, 141
MspR9I CCNGG 1 cut(s) 142
MwoI GCNNNNNNNGC 2 cut(s) 92, 164
NciI CCSGG 1 cut(s) 142
NdeII GATC 1 cut(s) 55
NlaIII CATG 1 cut(s) 8
NmeAIII GCCGAG 1 cut(s) 88
NmuCI GTSAC 1 cut(s) 26
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 2 cut(s) 64, 86
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 2 cut(s) 154, 157
Ppu21I YACGTR 2 cut(s) 12, 26
SatI GCNGC 2 cut(s) 153, 156
Sau3AI GATC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 142
SetI ASST 4 cut(s) 14, 28, 55, 80
SsiI CCGC 4 cut(s) 112, 152, 155, 158
StyD4I CCNGG 1 cut(s) 140
TaiI ACGT 2 cut(s) 14, 28
TaqI TCGA 2 cut(s) 67, 74
TauI GCSGC 2 cut(s) 155, 158
TfiI GAWTC 1 cut(s) 161
TscAI CASTG 1 cut(s) 102
TseFI GTSAC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 26
TspRI CASTG 1 cut(s) 102
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.