Rh6CG294300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0008161
Physical Location & Seq
Reverse (-)
47214096 .. 47214350
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG294300.1

Sequence Viewer

Length: 255 bp
ATGAGCTCGGAGTCGGACGAGGAAATCGGGGACCGGCAGAGCGGGCAGGTCTGCTGGGAGTGGAGCCACGTGTCGATGCATGATACGTGGGAAGGCTTACGTGACAGCAGAGAGGGAGTAGCCGGAGCTGATCGTCCTGCTCGAACTTCGAGGTCGGAAGCGACGACGGCAGTGGAGGAGGCTCGGCGGTGCTTGATGGTGGAGAAGGCAAAGACCGGGAGCGAGGCGGCGGCGGATTCGGCAAAGGGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.16

Weight (kDa)

4.79

Isoelectric Point (pI)

70.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 37
AccBSI CCGCTC 1 cut(s) 42
AciI CCGC 5 cut(s) 42, 187, 227, 230, 233
AcvI CACGTG 1 cut(s) 70
AflIII ACRYGT 1 cut(s) 69
AluBI AGCT 2 cut(s) 6, 128
AluI AGCT 2 cut(s) 6, 128
Alw21I GWGCWC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 31
AsuC2I CCSGG 1 cut(s) 217
AvaII GGWCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 8
BbrPI CACGTG 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 8
BccI CCATC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 183
BcnI CCSGG 1 cut(s) 217
BfuAI ACCTGC 1 cut(s) 37
BisI GCNGC 2 cut(s) 228, 231
BlsI GCNGC 2 cut(s) 229, 232
Bme1390I CCNGG 1 cut(s) 217
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 2 cut(s) 32, 65
BmrFI CCNGG 1 cut(s) 217
BmsI GCATC 1 cut(s) 66
BpuMI CCSGG 1 cut(s) 217
BsaAI YACGTR 3 cut(s) 70, 87, 101
Bse118I RCCGGY 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 191
BseYI CCCAGC 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 3 cut(s) 34, 123, 216
BslFI GGGAC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 5 cut(s) 42, 187, 227, 230, 233
BspLI GGNNCC 2 cut(s) 32, 65
BspMI ACCTGC 1 cut(s) 37
BsrBI CCGCTC 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 33
BssAI RCCGGY 1 cut(s) 33
BssMI GATC 1 cut(s) 130
BstBAI YACGTR 3 cut(s) 70, 87, 101
BstC8I GCNNGC 1 cut(s) 44
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 3 cut(s) 43, 167, 239
BstSCI CCNGG 1 cut(s) 215
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 177
BveI ACCTGC 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 44
Cfr10I RCCGGY 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 31
CviAII CATG 1 cut(s) 80
CviJI RGCY 6 cut(s) 6, 66, 96, 122, 128, 182
CviKI_1 RGCY 6 cut(s) 6, 66, 96, 122, 128, 182
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
EciI GGCGGA 1 cut(s) 248
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 6
Eco72I CACGTG 1 cut(s) 70
EcoICRI GAGCTC 1 cut(s) 6
EcoT22I ATGCAT 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 1 cut(s) 83
FaiI YATR 1 cut(s) 81
FaqI GGGAC 1 cut(s) 44
FatI CATG 1 cut(s) 79
FauI CCCGC 1 cut(s) 35
Fnu4HI GCNGC 2 cut(s) 228, 231
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 228, 231
GluI GCNGC 2 cut(s) 228, 231
GsaI CCCAGC 1 cut(s) 58
HapII CCGG 3 cut(s) 34, 123, 216
Hin1II CATG 1 cut(s) 83
HinfI GANTC 2 cut(s) 11, 236
HpaII CCGG 3 cut(s) 34, 123, 216
Hpy188I TCNGA 3 cut(s) 10, 16, 157
Hpy99I CGWCG 2 cut(s) 166, 169
HpyAV CCTTC 2 cut(s) 86, 199
HpyCH4IV ACGT 3 cut(s) 69, 86, 100
HpyCH4V TGCA 1 cut(s) 79
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 167, 239
HpySE526I ACGT 3 cut(s) 69, 86, 100
Hsp92II CATG 1 cut(s) 83
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 3 cut(s) 63, 125, 219
LpnPI CCDG 6 cut(s) 32, 40, 47, 136, 150, 229
LweI GCATC 1 cut(s) 66
MaeII ACGT 3 cut(s) 69, 86, 100
MaeIII GTNAC 1 cut(s) 101
MalI GATC 1 cut(s) 132
MbiI CCGCTC 1 cut(s) 42
MboI GATC 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 8
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 6 cut(s) 13, 106, 144, 169, 172, 217
Mph1103I ATGCAT 1 cut(s) 81
MspI CCGG 3 cut(s) 34, 123, 216
MspR9I CCNGG 1 cut(s) 217
MwoI GCNNNNNNNGC 3 cut(s) 43, 167, 239
NciI CCSGG 1 cut(s) 217
NdeII GATC 1 cut(s) 130
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 2 cut(s) 32, 65
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 101
NsiI ATGCAT 1 cut(s) 81
PcsI WCGNNNNNNNCGW 2 cut(s) 139, 161
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 2 cut(s) 229, 232
PleI GAGTC 1 cut(s) 19
PmaCI CACGTG 1 cut(s) 70
PmlI CACGTG 1 cut(s) 70
PpsI GAGTC 1 cut(s) 19
Ppu21I YACGTR 3 cut(s) 70, 87, 101
Psp124BI GAGCTC 1 cut(s) 8
PspCI CACGTG 1 cut(s) 70
PspFI CCCAGC 1 cut(s) 54
PspN4I GGNNCC 2 cut(s) 32, 65
PspPI GGNCC 1 cut(s) 31
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 2 cut(s) 228, 231
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 217
SduI GDGCHC 1 cut(s) 8
SetI ASST 7 cut(s) 8, 51, 72, 89, 103, 130, 155
SfaNI GCATC 1 cut(s) 66
SinI GGWCC 1 cut(s) 31
SsiI CCGC 5 cut(s) 42, 187, 227, 230, 233
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 215
TaiI ACGT 3 cut(s) 72, 89, 103
TaqI TCGA 3 cut(s) 74, 142, 149
TauI GCSGC 2 cut(s) 230, 233
TfiI GAWTC 1 cut(s) 236
TscAI CASTG 1 cut(s) 177
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspRI CASTG 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 31
Zsp2I ATGCAT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.