Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0008161

Physical Location & Seq

Genomic Coordinates Reverse (-)

7380356 .. 7383552

Gene Structure 3197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG093100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGGTCCAGAAGATAAGAATTCCTTGTTAGTATTGACGTTGATAAAACTCTTTGAATATTTTCTGTCTCAGATTGTGGCATTCTTGGGAGTGATGGTATACAAGTTTTGTGGAGAGGAGTTACGGGAAATGTTTGGTTATGAAGAACACCCATATGGGTTTTATACGATGGCTGACGGCGCAGTCGGCGGCGACAACCGCAGTGGAGGAGGCTCAGCGGTGCTTGATGGCAGAGAAGGCGAAGACGGGGAGCGAGGCGACGGGATCGGCGGCGGTAGCGGATTCGGCCGGAGATACTCGATCGGGGCGTCGTCGCCGGAAGAGGGAGTCCGGGTCGGATGTGAAGAGCGGGTCAGAGAATTCTTCAAGGAAGACGATGAGCTGGAGCTTGAGAGGGAATTCTCACTTGTTGAGACAAGAGAGGGCTTGGTAGATGATGATTGGGGGGCCCTCTTGTCCGATGCGATTCTGAGCTCGGGGGATCGGTTTCGGAGGTTTCATTTCAAGAATCTTGATTTACAGGGTTCTGTATTCGAATTCGGGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000323 GO:0002376 GO:0002495 GO:0002504 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005768 GO:0005773 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019882 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0042287 GO:0042289 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045346 GO:0045347 GO:0048002 GO:0048519 GO:0050789 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

182

Amino Acids

20.21

Weight (kDa)

4.48

Isoelectric Point (pI)

32.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008161)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g19010
rosa_laevigata	RLG00000010207 RLG00000028896 RLG00000030957
rosa_multiflora	Rmu_sc0000918.1_g000026 Rmu_ssc0000368.1_g000057
rosa_samantha	Rh2BG530700 Rh2CG303600 Rh2DG339700 Rh2DG362700 Rh2DG539700 Rh3BG250000 Rh4DG034400 Rh4DG254100 Rh5BG047900 Rh5BG259600 Rh5CG093100 Rh6BG417800 Rh6CG294300 Rh6CG374600 Rh6DG286300 Rh7AG414300 Rh7BG210000 Rh7DG409900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
AccBSI	CCGCTC	1 cut(s)	349
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	7 cut(s)	189, 199, 218, 270, 273, 279, 349
AclWI	GGATC	2 cut(s)	272, 489
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	4 cut(s)	19, 359, 398, 536
AcyI	GRCGYC	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	323
AgsI	TTSAA	3 cut(s)	56, 367, 505
AluBI	AGCT	3 cut(s)	382, 388, 474
AluI	AGCT	3 cut(s)	382, 388, 474
Alw21I	GWGCWC	1 cut(s)	476
Alw26I	GTCTC	2 cut(s)	72, 407
AlwI	GGATC	2 cut(s)	272, 489
Ama87I	CYCGRG	1 cut(s)	475
AoxI	GGCC	2 cut(s)	286, 447
ApaI	GGGCCC	1 cut(s)	451
ApoI	RAATTY	4 cut(s)	19, 359, 398, 536
Asp700I	GAANNNNTTC	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	3 cut(s)	5, 447, 448
AsuC2I	CCSGG	1 cut(s)	332
AsuII	TTCGAA	1 cut(s)	534
AvaI	CYCGRG	1 cut(s)	475
AvaII	GGWCC	1 cut(s)	5
BaeGI	GKGCMC	2 cut(s)	451, 546
BanII	GRGCYC	2 cut(s)	451, 476
BbsI	GAAGAC	2 cut(s)	249, 378
Bbv12I	GWGCWC	1 cut(s)	476
BccI	CCATC	3 cut(s)	88, 163, 221
BceAI	ACGGC	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	332
BcoDI	GTCTC	2 cut(s)	72, 407
BisI	GCNGC	2 cut(s)	190, 271
BlpI	GCTNAGC	1 cut(s)	214
BlsI	GCNGC	2 cut(s)	191, 272
Bme1390I	CCNGG	1 cut(s)	332
Bme18I	GGWCC	1 cut(s)	5
BmeT110I	CYCGRG	1 cut(s)	475
BmgT120I	GGNCC	3 cut(s)	5, 447, 448
BmiI	GGNNCC	3 cut(s)	6, 448, 449
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	1 cut(s)	451
BpiI	GAAGAC	2 cut(s)	249, 378
BpmI	CTGGAG	1 cut(s)	404
Bpu1102I	GCTNAGC	1 cut(s)	214
Bpu14I	TTCGAA	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	332
BsaHI	GRCGYC	1 cut(s)	308
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 318, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
BseGI	GGATG	1 cut(s)	344
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMII	CTCAG	3 cut(s)	83, 228, 461
BseRI	GAGGAG	2 cut(s)	131, 222
BseSI	GKGCMC	2 cut(s)	451, 546
BseX3I	CGGCCG	1 cut(s)	286
Bsh1285I	CGRYCG	2 cut(s)	289, 303
BshFI	GGCC	2 cut(s)	288, 449
BsiEI	CGRYCG	2 cut(s)	289, 303
BsiHKAI	GWGCWC	1 cut(s)	476
BsiHKCI	CYCGRG	1 cut(s)	475
BsiSI	CCGG	3 cut(s)	289, 317, 331
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	2 cut(s)	72, 407
BsmI	GAATGC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	288, 449
BsoBI	CYCGRG	1 cut(s)	475
Bsp119I	TTCGAA	1 cut(s)	534
Bsp120I	GGGCCC	1 cut(s)	447
Bsp1286I	GDGCHC	3 cut(s)	451, 476, 546
Bsp143I	GATC	3 cut(s)	264, 300, 481
Bsp1720I	GCTNAGC	1 cut(s)	214
BspACI	CCGC	7 cut(s)	189, 199, 218, 270, 273, 279, 349
BspANI	GGCC	2 cut(s)	288, 449
BspCNI	CTCAG	3 cut(s)	82, 227, 462
BspLI	GGNNCC	3 cut(s)	6, 448, 449
BspPI	GGATC	2 cut(s)	272, 489
BspQI	GCTCTTC	1 cut(s)	339
BspT104I	TTCGAA	1 cut(s)	534
BsrBI	CCGCTC	1 cut(s)	349
BssMI	GATC	3 cut(s)	264, 300, 481
BssNAI	GTATAC	1 cut(s)	100
BssNI	GRCGYC	1 cut(s)	308
Bst1107I	GTATAC	1 cut(s)	100
Bst6I	CTCTTC	2 cut(s)	315, 339
BstACI	GRCGYC	1 cut(s)	308
BstBI	TTCGAA	1 cut(s)	534
BstDEI	CTNAG	3 cut(s)	69, 214, 470
BstF5I	GGATG	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	3 cut(s)	267, 303, 484
BstMAI	GTCTC	2 cut(s)	72, 407
BstMBI	GATC	3 cut(s)	264, 300, 481
BstMCI	CGRYCG	2 cut(s)	289, 303
BstMWI	GCNNNNNNNGC	6 cut(s)	179, 186, 198, 237, 276, 285
BstSCI	CCNGG	1 cut(s)	330
BstSLI	GKGCMC	2 cut(s)	451, 546
BstV2I	GAAGAC	2 cut(s)	249, 378
BstZ17I	GTATAC	1 cut(s)	100
BstZI	CGGCCG	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	288, 449
BtsCI	GGATG	1 cut(s)	344
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	208, 544
CfoI	GCGC	1 cut(s)	182
Cfr13I	GGNCC	3 cut(s)	5, 447, 448
CseI	GACGC	1 cut(s)	297
CspCI	CAANNNNNGTGG	4 cut(s)	91, 126, 184, 219
CviJI	RGCY	8 cut(s)	173, 213, 288, 382, 388, 426, 449, 474
CviKI_1	RGCY	8 cut(s)	173, 213, 288, 382, 388, 426, 449, 474
DdeI	CTNAG	3 cut(s)	69, 214, 470
DpnI	GATC	3 cut(s)	266, 302, 483
DpnII	GATC	3 cut(s)	264, 300, 481
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	286
EagI	CGGCCG	1 cut(s)	286
Eam1104I	CTCTTC	2 cut(s)	315, 339
EarI	CTCTTC	2 cut(s)	315, 339
Ecl136II	GAGCTC	1 cut(s)	474
EclXI	CGGCCG	1 cut(s)	286
Eco24I	GRGCYC	2 cut(s)	451, 476
Eco47I	GGWCC	1 cut(s)	5
Eco52I	CGGCCG	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	475
EcoICRI	GAGCTC	1 cut(s)	474
EcoO109I	RGGNCCY	2 cut(s)	447, 448
EcoRI	GAATTC	4 cut(s)	19, 359, 398, 536
EcoT38I	GRGCYC	2 cut(s)	451, 476
FaiI	YATR	5 cut(s)	100, 141, 154, 156, 165
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FauI	CCCGC	1 cut(s)	342
FauNDI	CATATG	1 cut(s)	154
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	190, 271
FokI	GGATG	1 cut(s)	351
FriOI	GRGCYC	2 cut(s)	451, 476
Fsp4HI	GCNGC	2 cut(s)	190, 271
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	2 cut(s)	190, 271
GsuI	CTGGAG	1 cut(s)	404
HaeIII	GGCC	2 cut(s)	288, 449
HapII	CCGG	3 cut(s)	289, 317, 331
HgaI	GACGC	1 cut(s)	297
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	308
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HinfI	GANTC	4 cut(s)	282, 327, 466, 508
HpaII	CCGG	3 cut(s)	289, 317, 331
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	6 cut(s)	72, 338, 356, 460, 471, 492
Hpy188III	TCNNGA	3 cut(s)	8, 505, 512
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	3 cut(s)	263, 313, 316
HpyAV	CCTTC	1 cut(s)	230
HpyCH4IV	ACGT	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	6 cut(s)	179, 186, 198, 237, 276, 285
HpyF3I	CTNAG	3 cut(s)	69, 214, 470
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	308
HspAI	GCGC	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	264, 300, 481
LguI	GCTCTTC	1 cut(s)	339
LmnI	GCTCC	2 cut(s)	250, 385
LpnPI	CCDG	6 cut(s)	21, 302, 330, 344, 368, 506
LweI	GCATC	1 cut(s)	451
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	120
MalI	GATC	3 cut(s)	266, 302, 483
MbiI	CCGCTC	1 cut(s)	349
MboI	GATC	3 cut(s)	264, 300, 481
MboII	GAAGA	7 cut(s)	23, 155, 254, 332, 355, 356, 383
MhlI	GDGCHC	3 cut(s)	451, 476, 546
MluCI	AATT	4 cut(s)	19, 359, 398, 536
MlyI	GAGTC	1 cut(s)	336
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	9 cut(s)	109, 200, 203, 248, 316, 387, 415, 461, 486
MroXI	GAANNNNTTC	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	3 cut(s)	289, 317, 331
MspR9I	CCNGG	1 cut(s)	332
Mva1269I	GAATGC	1 cut(s)	80
MwoI	GCNNNNNNNGC	6 cut(s)	179, 186, 198, 237, 276, 285
NciI	CCSGG	1 cut(s)	332
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	3 cut(s)	264, 300, 481
NlaIV	GGNNCC	3 cut(s)	6, 448, 449
NspV	TTCGAA	1 cut(s)	534
PciSI	GCTCTTC	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	1 cut(s)	305
PctI	GAATGC	1 cut(s)	80
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	3 cut(s)	282, 466, 508
PkrI	GCNGC	2 cut(s)	191, 272
Ple19I	CGATCG	1 cut(s)	303
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
Psp124BI	GAGCTC	1 cut(s)	476
PspN4I	GGNNCC	3 cut(s)	6, 448, 449
PspOMI	GGGCCC	1 cut(s)	447
PspPI	GGNCC	3 cut(s)	5, 447, 448
PvuI	CGATCG	1 cut(s)	303
RseI	CAYNNNNRTG	1 cut(s)	153
SacI	GAGCTC	1 cut(s)	476
SapI	GCTCTTC	1 cut(s)	339
SatI	GCNGC	2 cut(s)	190, 271
Sau3AI	GATC	3 cut(s)	264, 300, 481
Sau96I	GGNCC	3 cut(s)	5, 447, 448
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	1 cut(s)	332
SduI	GDGCHC	3 cut(s)	451, 476, 546
SetI	ASST	5 cut(s)	41, 384, 390, 476, 497
SfaNI	GCATC	1 cut(s)	451
SfuI	TTCGAA	1 cut(s)	534
SinI	GGWCC	1 cut(s)	5
SmiMI	CAYNNNNRTG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	4 cut(s)	19, 359, 398, 536
SsiI	CCGC	7 cut(s)	189, 199, 218, 270, 273, 279, 349
SspI	AATATT	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	476
StyD4I	CCNGG	1 cut(s)	330
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	2 cut(s)	299, 534
TasI	AATT	4 cut(s)	19, 359, 398, 536
TauI	GCSGC	2 cut(s)	192, 273
TfiI	GAWTC	3 cut(s)	282, 466, 508
TscAI	CASTG	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	156, 488
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	4 cut(s)	19, 359, 398, 536
XmiI	GTMKAC	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.