Rh3BG250000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0008161
Physical Location & Seq
Reverse (-)
23891207 .. 23891482
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG250000.1

Sequence Viewer

Length: 276 bp
ATGGCAGAGAAGGCGAAGACCGGGAGCGAGGTGACGGGATCGGCGGCGGCAGCGGATTCGGCCGGAGATACTCGGGCGGGGGCGTCTTCGCCGGAAAAGGGAGTCCAGGTAGGATGTGAAGAGCGGGTCGGAGAATTCTTCAAGGAAGACGATGAGCTGGAGCTTGAGAGGGAATTCTCGCTTGTTGAGACAAGAGAGAGCTTGGTCGATGATGATTGGGTGCGCGGAGGTCCAGCAGTGGCAGCGTGCGCCGCTGTGCTGGAAATTGTCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.52

Weight (kDa)

4.2

Isoelectric Point (pI)

24.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 124
AccII CGCG 1 cut(s) 225
AciI CCGC 7 cut(s) 44, 47, 53, 77, 124, 225, 252
AclWI GGATC 1 cut(s) 46
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 2 cut(s) 134, 173
AcyI GRCGYC 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 142
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 3 cut(s) 157, 163, 201
AluI AGCT 3 cut(s) 157, 163, 201
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 1 cut(s) 46
Ama87I CYCGRG 1 cut(s) 72
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 50, 242
ApoI RAATTY 2 cut(s) 134, 173
AspLEI GCGC 2 cut(s) 225, 251
AspS9I GGNCC 1 cut(s) 230
AsuC2I CCSGG 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 72
AvaII GGWCC 1 cut(s) 230
BbsI GAAGAC 3 cut(s) 23, 78, 153
BbvI GCAGC 2 cut(s) 62, 254
BcgI CGANNNNNNTGC 2 cut(s) 39, 73
BciT130I CCWGG 1 cut(s) 107
BcnI CCSGG 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 182
BisI GCNGC 5 cut(s) 45, 48, 51, 243, 252
BlsI GCNGC 5 cut(s) 46, 49, 52, 244, 253
Bme1390I CCNGG 2 cut(s) 22, 107
Bme18I GGWCC 1 cut(s) 230
BmeT110I CYCGRG 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 230
BmrFI CCNGG 2 cut(s) 22, 107
BpiI GAAGAC 3 cut(s) 23, 78, 153
BpmI CTGGAG 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 22
BsaHI GRCGYC 1 cut(s) 83
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 98
BseX3I CGGCCG 1 cut(s) 60
BseXI GCAGC 2 cut(s) 62, 254
Bsh1236I CGCG 1 cut(s) 225
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 1 cut(s) 62
BsiEI CGRYCG 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 72
BsiSI CCGG 3 cut(s) 21, 63, 92
BslI CCNNNNNNNGG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 182
BsnI GGCC 1 cut(s) 62
BsoBI CYCGRG 1 cut(s) 72
Bsp143I GATC 1 cut(s) 38
BspACI CCGC 7 cut(s) 44, 47, 53, 77, 124, 225, 252
BspANI GGCC 1 cut(s) 62
BspFNI CGCG 1 cut(s) 225
BspPI GGATC 1 cut(s) 46
BspQI GCTCTTC 1 cut(s) 114
BsrBI CCGCTC 1 cut(s) 124
BssMI GATC 1 cut(s) 38
BssNI GRCGYC 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 114
BstACI GRCGYC 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 247
BstF5I GGATG 1 cut(s) 119
BstFNI CGCG 1 cut(s) 225
BstHHI GCGC 2 cut(s) 225, 251
BstKTI GATC 1 cut(s) 41
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 1 cut(s) 38
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 6 cut(s) 11, 50, 59, 242, 248, 251
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 2 cut(s) 20, 105
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 2 cut(s) 62, 254
BstV2I GAAGAC 3 cut(s) 23, 78, 153
BstZI CGGCCG 1 cut(s) 60
BsuRI GGCC 1 cut(s) 62
BtsCI GGATG 1 cut(s) 119
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 247
CfoI GCGC 2 cut(s) 225, 251
Cfr13I GGNCC 1 cut(s) 230
CseI GACGC 1 cut(s) 72
CviJI RGCY 4 cut(s) 62, 157, 163, 201
CviKI_1 RGCY 4 cut(s) 62, 157, 163, 201
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
EaeI YGGCCR 1 cut(s) 60
EagI CGGCCG 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
EclXI CGGCCG 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 230
Eco52I CGGCCG 1 cut(s) 60
Eco88I CYCGRG 1 cut(s) 72
EcoRI GAATTC 2 cut(s) 134, 173
EcoRII CCWGG 1 cut(s) 105
FauI CCCGC 2 cut(s) 70, 117
Fnu4HI GCNGC 5 cut(s) 45, 48, 51, 243, 252
FokI GGATG 1 cut(s) 126
Fsp4HI GCNGC 5 cut(s) 45, 48, 51, 243, 252
GlaI GCGC 2 cut(s) 224, 250
GluI GCNGC 5 cut(s) 45, 48, 51, 243, 252
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 1 cut(s) 62
HapII CCGG 3 cut(s) 21, 63, 92
HgaI GACGC 1 cut(s) 72
HhaI GCGC 2 cut(s) 225, 251
Hin1I GRCGYC 1 cut(s) 83
Hin6I GCGC 2 cut(s) 223, 249
HinP1I GCGC 2 cut(s) 223, 249
HinfI GANTC 2 cut(s) 56, 102
HpaII CCGG 3 cut(s) 21, 63, 92
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 50, 59, 242, 248, 251
Hsp92I GRCGYC 1 cut(s) 83
HspAI GCGC 2 cut(s) 223, 249
Kzo9I GATC 1 cut(s) 38
LguI GCTCTTC 1 cut(s) 114
LmnI GCTCC 2 cut(s) 24, 160
LpnPI CCDG 8 cut(s) 34, 76, 92, 105, 119, 143, 245, 246
Lsp1109I GCAGC 2 cut(s) 62, 254
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 40
MbiI CCGCTC 1 cut(s) 124
MboI GATC 1 cut(s) 38
MboII GAAGA 5 cut(s) 28, 78, 130, 131, 158
MluCI AATT 3 cut(s) 134, 173, 264
MlyI GAGTC 1 cut(s) 111
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 3 cut(s) 22, 162, 221
MseI TTAA 1 cut(s) 274
MspA1I CMGCKG 2 cut(s) 53, 254
MspI CCGG 3 cut(s) 21, 63, 92
MspR9I CCNGG 2 cut(s) 22, 107
MvaI CCWGG 1 cut(s) 107
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 6 cut(s) 11, 50, 59, 242, 248, 251
NciI CCSGG 1 cut(s) 22
NdeII GATC 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 31
PciSI GCTCTTC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 5 cut(s) 46, 49, 52, 244, 253
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspPI GGNCC 1 cut(s) 230
SapI GCTCTTC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 274
SatI GCNGC 5 cut(s) 45, 48, 51, 243, 252
Sau3AI GATC 1 cut(s) 38
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 2 cut(s) 22, 107
SetI ASST 6 cut(s) 33, 111, 159, 165, 203, 232
SinI GGWCC 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 3 cut(s) 134, 173, 264
SsiI CCGC 7 cut(s) 44, 47, 53, 77, 124, 225, 252
StyD4I CCNGG 2 cut(s) 20, 105
TaqI TCGA 2 cut(s) 207, 270
TasI AATT 3 cut(s) 134, 173, 264
TauI GCSGC 3 cut(s) 47, 50, 254
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 1 cut(s) 274
Tru9I TTAA 1 cut(s) 274
TscAI CASTG 1 cut(s) 243
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 2 cut(s) 50, 242
Tsp45I GTSAC 1 cut(s) 31
TspRI CASTG 1 cut(s) 243
VpaK11BI GGWCC 1 cut(s) 230
XapI RAATTY 2 cut(s) 134, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.