Rh5BG047900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
3823413 .. 3824829
1417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG047900.1

Sequence Viewer

Length: 150 bp
ATGGCGGAGAAGGCGAAGACCGGGAGCGAGGCGACGGGATCGGCGGAGGCGGCGGATTCGACCGGAGATACTCGGGCGGGGGAGTCGTCGCCGGAAGAGGGAGTGACGTGGCGGAGGAAGCGGTTGTTGGATTCGGCAGAGGGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

49

Amino Acids

5.08

Weight (kDa)

4.69

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 5, 44, 50, 53, 77, 112, 121
AclWI GGATC 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 98
AjiI CACGTC 1 cut(s) 108
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AlwI GGATC 1 cut(s) 46
Ama87I CYCGRG 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 23
BcnI CCSGG 1 cut(s) 22
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 22
BmeT110I CYCGRG 1 cut(s) 72
BmgBI CACGTC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 22
BsaWI WCCGGW 1 cut(s) 62
Bsc4I CCNNNNNNNGG 1 cut(s) 98
BseLI CCNNNNNNNGG 1 cut(s) 98
Bsh1285I CGRYCG 1 cut(s) 63
BsiEI CGRYCG 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 72
BsiSI CCGG 3 cut(s) 21, 63, 92
BslI CCNNNNNNNGG 1 cut(s) 98
BsoBI CYCGRG 1 cut(s) 72
Bsp143I GATC 1 cut(s) 38
BspACI CCGC 7 cut(s) 5, 44, 50, 53, 77, 112, 121
BspPI GGATC 1 cut(s) 46
BssMI GATC 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 90
BstKTI GATC 1 cut(s) 41
BstMBI GATC 1 cut(s) 38
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 3 cut(s) 11, 50, 118
BstSCI CCNGG 1 cut(s) 20
BstV2I GAAGAC 1 cut(s) 23
BtrI CACGTC 1 cut(s) 108
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 4 cut(s) 20, 59, 68, 127
Eco88I CYCGRG 1 cut(s) 72
FauI CCCGC 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
HapII CCGG 3 cut(s) 21, 63, 92
HinfI GANTC 3 cut(s) 56, 83, 131
HpaII CCGG 3 cut(s) 21, 63, 92
Hpy99I CGWCG 2 cut(s) 37, 91
HpyAV CCTTC 1 cut(s) 4
HpyCH4IV ACGT 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 50, 118
HpySE526I ACGT 1 cut(s) 107
Kzo9I GATC 1 cut(s) 38
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 3 cut(s) 34, 76, 105
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 103
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 2 cut(s) 28, 107
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 5 cut(s) 22, 40, 91, 108, 133
MspI CCGG 3 cut(s) 21, 63, 92
MspR9I CCNGG 1 cut(s) 22
MwoI GCNNNNNNNGC 3 cut(s) 11, 50, 118
NciI CCSGG 1 cut(s) 22
NdeII GATC 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 103
PfeI GAWTC 2 cut(s) 56, 131
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 1 cut(s) 38
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 22
SetI ASST 1 cut(s) 110
SsiI CCGC 7 cut(s) 5, 44, 50, 53, 77, 112, 121
StyD4I CCNGG 1 cut(s) 20
TaiI ACGT 1 cut(s) 110
TaqI TCGA 1 cut(s) 59
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 2 cut(s) 56, 131
TseFI GTSAC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.