Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000918.1

Orthogroup ID

OG0008161

Physical Location & Seq

Genomic Coordinates Reverse (-)

137199 .. 138063

Gene Structure 865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000918.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ctgaacggcaccagaggcaccgtcgtattcagaattgaaacgcccctagaggtcgacgccgtggttggggcggttagcgaccgtgagcagcagctcgaccaggccgtcgagcatgtagtcagcggcgatgacgatggcggtgacggagagcatggtctgctccttgagggcgagggtgatgtggacgccatcggcgggggtctagatcagggcgcggagggtttcgatgaggcggtggagggttttggggagggagtccgggtcggatgtgaagagcgggtcgaagaactcttcgaggaagacgatgagctggagcttgagagggaattcgcgtctgttgagacaagagagggcttggtcgatgaggattgggtacgcggagcttcgcaatctttgtctaaggaagccattgctaggatcttcggcgactccctcgacaaacccaccaaaccacgcgacatcgccgtctctatggtcaggttctgcgtgttctgctgcagacgtctccggctccggttccccttcaccatgtccaaagcctgcaacgtctactgcgccaatctcaaaagctgcctcttcctcttcatcgctctcttccccaaattaaggttctggagactgatttgggggaaaaggattagggaagtgaagggacgcaattacccctcaaaagttaacggagttaacgtttttactgttgccaggtatggaaattgggtcggggccaaaacttcaggtaccattatgacatttttcaaagtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008506 GO:0008515 GO:0008643 GO:0009669 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015154 GO:0015157 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_2

Protein Analysis

254

Amino Acids

28.25

Weight (kDa)

4.84

Isoelectric Point (pI)

23.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008161)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g19010
rosa_laevigata	RLG00000010207 RLG00000028896 RLG00000030957
rosa_multiflora	Rmu_sc0000918.1_g000026 Rmu_ssc0000368.1_g000057
rosa_samantha	Rh2BG530700 Rh2CG303600 Rh2DG339700 Rh2DG362700 Rh2DG539700 Rh3BG250000 Rh4DG034400 Rh4DG254100 Rh5BG047900 Rh5BG259600 Rh5CG093100 Rh6BG417800 Rh6CG294300 Rh6CG374600 Rh6DG286300 Rh7AG414300 Rh7BG210000 Rh7DG409900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	104, 464
AatII	GACGTC	1 cut(s)	505
Acc65I	GGTACC	1 cut(s)	737
AccB1I	GGYRCC	3 cut(s)	8, 17, 737
AccBSI	CCGCTC	1 cut(s)	277
AccI	GTMKAC	2 cut(s)	54, 549
AccII	CGCG	4 cut(s)	215, 332, 378, 456
AciI	CCGC	8 cut(s)	71, 123, 138, 195, 215, 233, 277, 378
AclI	AACGTT	1 cut(s)	687
AclWI	GGATC	1 cut(s)	425
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	1 cut(s)	717
AcyI	GRCGYC	3 cut(s)	57, 186, 502
AfaI	GTAC	2 cut(s)	375, 739
AfiI	CCNNNNNNNGG	4 cut(s)	66, 195, 414, 606
AgsI	TTSAA	2 cut(s)	38, 757
AjnI	CCWGG	2 cut(s)	99, 701
AjuI	GAANNNNNNNTTGG	2 cut(s)	593, 625
AluBI	AGCT	5 cut(s)	94, 310, 316, 383, 570
AluI	AGCT	5 cut(s)	94, 310, 316, 383, 570
Alw26I	GTCTC	4 cut(s)	335, 472, 509, 610
AlwI	GGATC	1 cut(s)	425
AlwNI	CAGNNNCTG	1 cut(s)	483
AoxI	GGCC	2 cut(s)	102, 723
ApeKI	GCWGC	4 cut(s)	88, 91, 495, 570
ApoI	RAATTY	1 cut(s)	326
Asp718I	GGTACC	1 cut(s)	737
AspLEI	GCGC	2 cut(s)	215, 557
AspS9I	GGNCC	1 cut(s)	723
AsuC2I	CCSGG	1 cut(s)	260
AsuHPI	GGTGA	3 cut(s)	152, 188, 517
BanI	GGYRCC	3 cut(s)	8, 17, 737
BbsI	GAAGAC	1 cut(s)	306
BbvI	GCAGC	4 cut(s)	100, 103, 482, 557
BccI	CCATC	2 cut(s)	128, 197
BceAI	ACGGC	4 cut(s)	22, 44, 89, 449
BciT130I	CCWGG	2 cut(s)	101, 703
BcnI	CCSGG	1 cut(s)	260
BcoDI	GTCTC	4 cut(s)	335, 472, 509, 610
BfaI	CTAG	3 cut(s)	47, 203, 414
BfmI	CTRYAG	1 cut(s)	496
BisI	GCNGC	5 cut(s)	89, 92, 124, 496, 571
BlsI	GCNGC	5 cut(s)	90, 93, 125, 497, 572
Bme1390I	CCNGG	3 cut(s)	101, 260, 703
BmgT120I	GGNCC	1 cut(s)	723
BmiI	GGNNCC	6 cut(s)	10, 19, 512, 518, 724, 739
BmrFI	CCNGG	3 cut(s)	101, 260, 703
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	2 cut(s)	332, 634
BpuEI	CTTGAG	2 cut(s)	185, 338
BpuMI	CCSGG	1 cut(s)	260
BsaHI	GRCGYC	3 cut(s)	57, 186, 502
BsaJI	CCNNGG	1 cut(s)	60
BsaWI	WCCGGW	1 cut(s)	513
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 672, 702
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 195, 414, 606
Bse3DI	GCAATG	1 cut(s)	408
BseBI	CCWGG	2 cut(s)	101, 703
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	272
BseLI	CCNNNNNNNGG	4 cut(s)	66, 195, 414, 606
BseMI	GCAATG	1 cut(s)	408
BseXI	GCAGC	4 cut(s)	100, 103, 482, 557
Bsh1236I	CGCG	4 cut(s)	215, 332, 378, 456
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	104, 725
BshNI	GGYRCC	3 cut(s)	8, 17, 737
BsiEI	CGRYCG	1 cut(s)	82
BsiSI	CCGG	3 cut(s)	259, 508, 514
BslFI	GGGAC	1 cut(s)	666
BslI	CCNNNNNNNGG	4 cut(s)	66, 195, 414, 606
BsmAI	GTCTC	4 cut(s)	335, 472, 509, 610
BsmBI	CGTCTC	2 cut(s)	472, 509
BsmFI	GGGAC	1 cut(s)	666
BsnI	GGCC	2 cut(s)	104, 725
Bsp143I	GATC	2 cut(s)	205, 417
BspACI	CCGC	8 cut(s)	71, 123, 138, 195, 215, 233, 277, 378
BspANI	GGCC	2 cut(s)	104, 725
BspFNI	CGCG	4 cut(s)	215, 332, 378, 456
BspLI	GGNNCC	6 cut(s)	10, 19, 512, 518, 724, 739
BspMAI	CTGCAG	1 cut(s)	500
BspPI	GGATC	1 cut(s)	425
BspQI	GCTCTTC	1 cut(s)	267
BspT107I	GGYRCC	3 cut(s)	8, 17, 737
BsrBI	CCGCTC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	408
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	2 cut(s)	205, 417
BssNI	GRCGYC	3 cut(s)	57, 186, 502
Bst2UI	CCWGG	2 cut(s)	101, 703
Bst4CI	ACNGT	3 cut(s)	22, 83, 697
Bst6I	CTCTTC	5 cut(s)	267, 296, 581, 587, 599
BstACI	GRCGYC	3 cut(s)	57, 186, 502
BstAPI	GCANNNNNTGC	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	541
BstDEI	CTNAG	1 cut(s)	399
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	272
BstFNI	CGCG	4 cut(s)	215, 332, 378, 456
BstHHI	GCGC	2 cut(s)	215, 557
BstKTI	GATC	2 cut(s)	208, 420
BstMAI	GTCTC	4 cut(s)	335, 472, 509, 610
BstMBI	GATC	2 cut(s)	205, 417
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 157, 492
BstNI	CCWGG	2 cut(s)	101, 703
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	3 cut(s)	99, 258, 701
BstSFI	CTRYAG	1 cut(s)	496
BstUI	CGCG	4 cut(s)	215, 332, 378, 456
BstV1I	GCAGC	4 cut(s)	100, 103, 482, 557
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	417
BstYI	RGATCY	1 cut(s)	417
BsuRI	GGCC	2 cut(s)	104, 725
BtgI	CCRYGG	1 cut(s)	60
BtgZI	GCGATG	3 cut(s)	141, 445, 571
BtsCI	GGATG	1 cut(s)	272
Cac8I	GCNNGC	1 cut(s)	541
CaiI	CAGNNNCTG	1 cut(s)	483
CfoI	GCGC	2 cut(s)	215, 557
Cfr13I	GGNCC	1 cut(s)	723
CseI	GACGC	4 cut(s)	65, 194, 321, 663
Csp6I	GTAC	2 cut(s)	374, 738
CviAII	CATG	3 cut(s)	113, 152, 529
CviQI	GTAC	2 cut(s)	374, 738
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	2 cut(s)	207, 419
DpnII	GATC	2 cut(s)	205, 417
DrdI	GACNNNNNNGTC	2 cut(s)	104, 464
DseDI	GACNNNNNNGTC	2 cut(s)	104, 464
Eam1104I	CTCTTC	5 cut(s)	267, 296, 581, 587, 599
EarI	CTCTTC	5 cut(s)	267, 296, 581, 587, 599
Eco57I	CTGAAG	1 cut(s)	717
EcoRI	GAATTC	1 cut(s)	326
EcoRII	CCWGG	2 cut(s)	99, 701
Esp3I	CGTCTC	2 cut(s)	472, 509
FaeI	CATG	3 cut(s)	116, 155, 532
FaiI	YATR	7 cut(s)	114, 153, 473, 530, 708, 746, 763
FaqI	GGGAC	1 cut(s)	666
FatI	CATG	3 cut(s)	112, 151, 528
FauI	CCCGC	2 cut(s)	188, 270
FblI	GTMKAC	2 cut(s)	54, 549
Fnu4HI	GCNGC	5 cut(s)	89, 92, 124, 496, 571
FokI	GGATG	1 cut(s)	279
Fsp4HI	GCNGC	5 cut(s)	89, 92, 124, 496, 571
FspBI	CTAG	3 cut(s)	47, 203, 414
GlaI	GCGC	2 cut(s)	214, 556
GluI	GCNGC	5 cut(s)	89, 92, 124, 496, 571
GsuI	CTGGAG	2 cut(s)	332, 634
HaeIII	GGCC	2 cut(s)	104, 725
HapII	CCGG	3 cut(s)	259, 508, 514
HgaI	GACGC	4 cut(s)	65, 194, 321, 663
HhaI	GCGC	2 cut(s)	215, 557
Hin1I	GRCGYC	3 cut(s)	57, 186, 502
Hin1II	CATG	3 cut(s)	116, 155, 532
Hin6I	GCGC	2 cut(s)	213, 555
HinP1I	GCGC	2 cut(s)	213, 555
HincII	GTYRAC	3 cut(s)	55, 676, 685
HindII	GTYRAC	3 cut(s)	55, 676, 685
HinfI	GANTC	2 cut(s)	255, 428
HpaI	GTTAAC	2 cut(s)	676, 685
HpaII	CCGG	3 cut(s)	259, 508, 514
HphI	GGTGA	3 cut(s)	152, 188, 517
Hpy166II	GTNNAC	5 cut(s)	55, 184, 550, 676, 685
Hpy188I	TCNGA	2 cut(s)	32, 266
Hpy188III	TCNNGA	2 cut(s)	203, 613
Hpy8I	GTNNAC	5 cut(s)	55, 184, 550, 676, 685
Hpy99I	CGWCG	3 cut(s)	26, 59, 110
HpyAV	CCTTC	2 cut(s)	532, 643
HpyCH4III	ACNGT	3 cut(s)	22, 83, 697
HpyCH4IV	ACGT	3 cut(s)	502, 546, 687
HpyCH4V	TGCA	2 cut(s)	498, 543
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 157, 492
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	3 cut(s)	502, 546, 687
Hsp92I	GRCGYC	3 cut(s)	57, 186, 502
Hsp92II	CATG	3 cut(s)	116, 155, 532
HspAI	GCGC	2 cut(s)	213, 555
KpnI	GGTACC	1 cut(s)	741
KspAI	GTTAAC	2 cut(s)	676, 685
Kzo9I	GATC	2 cut(s)	205, 417
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	4 cut(s)	165, 313, 380, 516
Lsp1109I	GCAGC	4 cut(s)	100, 103, 482, 557
MaeI	CTAG	3 cut(s)	47, 203, 414
MaeII	ACGT	3 cut(s)	502, 546, 687
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	2 cut(s)	207, 419
MbiI	CCGCTC	1 cut(s)	277
MboI	GATC	2 cut(s)	205, 417
MboII	GAAGA	8 cut(s)	283, 284, 296, 311, 412, 568, 574, 586
MflI	RGATCY	1 cut(s)	417
MluCI	AATT	5 cut(s)	33, 326, 602, 658, 712
MlyI	GAGTC	2 cut(s)	264, 422
MmeI	TCCRAC	1 cut(s)	244
MseI	TTAA	3 cut(s)	605, 675, 684
MspA1I	CMGCKG	1 cut(s)	123
MspI	CCGG	3 cut(s)	259, 508, 514
MspR9I	CCNGG	3 cut(s)	101, 260, 703
MvaI	CCWGG	2 cut(s)	101, 703
MvnI	CGCG	4 cut(s)	215, 332, 378, 456
MwoI	GCNNNNNNNGC	3 cut(s)	15, 157, 492
NciI	CCSGG	1 cut(s)	260
NdeII	GATC	2 cut(s)	205, 417
NlaIII	CATG	3 cut(s)	116, 155, 532
NlaIV	GGNNCC	6 cut(s)	10, 19, 512, 518, 724, 739
NmuCI	GTSAC	1 cut(s)	140
NspI	RCATGY	1 cut(s)	116
PciSI	GCTCTTC	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	3 cut(s)	102, 300, 684
PkrI	GCNGC	5 cut(s)	90, 93, 125, 497, 572
PleI	GAGTC	2 cut(s)	263, 422
PpsI	GAGTC	2 cut(s)	263, 422
Psp1406I	AACGTT	1 cut(s)	687
Psp6I	CCWGG	2 cut(s)	99, 701
PspGI	CCWGG	2 cut(s)	99, 701
PspN4I	GGNNCC	6 cut(s)	10, 19, 512, 518, 724, 739
PspPI	GGNCC	1 cut(s)	723
PstI	CTGCAG	1 cut(s)	500
PstNI	CAGNNNCTG	1 cut(s)	483
PsuI	RGATCY	1 cut(s)	417
RsaI	GTAC	2 cut(s)	375, 739
RsaNI	GTAC	2 cut(s)	374, 738
SalI	GTCGAC	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	3 cut(s)	605, 675, 684
SatI	GCNGC	5 cut(s)	89, 92, 124, 496, 571
Sau3AI	GATC	2 cut(s)	205, 417
Sau96I	GGNCC	1 cut(s)	723
SchI	GAGTC	2 cut(s)	264, 422
ScrFI	CCNGG	3 cut(s)	101, 260, 703
SfcI	CTRYAG	1 cut(s)	496
SmlI	CTYRAG	2 cut(s)	164, 317
SmoI	CTYRAG	2 cut(s)	164, 317
Sse9I	AATT	5 cut(s)	33, 326, 602, 658, 712
SsiI	CCGC	8 cut(s)	71, 123, 138, 195, 215, 233, 277, 378
SspMI	CTAG	3 cut(s)	47, 203, 414
StyD4I	CCNGG	3 cut(s)	99, 258, 701
TaaI	ACNGT	3 cut(s)	22, 83, 697
TaiI	ACGT	3 cut(s)	505, 549, 690
TaqI	TCGA	8 cut(s)	54, 96, 108, 225, 282, 294, 360, 435
TasI	AATT	5 cut(s)	33, 326, 602, 658, 712
TauI	GCSGC	1 cut(s)	126
Tru1I	TTAA	3 cut(s)	605, 675, 684
Tru9I	TTAA	3 cut(s)	605, 675, 684
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	4 cut(s)	88, 91, 495, 570
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	1 cut(s)	574
TspGWI	ACGGA	2 cut(s)	159, 693
XapI	RAATTY	1 cut(s)	326
XbaI	TCTAGA	1 cut(s)	202
XceI	RCATGY	1 cut(s)	116
XmiI	GTMKAC	2 cut(s)	54, 549
XspI	CTAG	3 cut(s)	47, 203, 414
ZraI	GACGTC	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.