Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008161

Physical Location & Seq

Genomic Coordinates Forward (+)

51283556 .. 51283921

Gene Structure 366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG362700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTTCAATAGATGGGATAAGAGGTGGATATATGTAGTCGGTGGGATAAGAGCAGACCATGCTCTCCGTCATCGCGGTGACGGAGAGCATGGTCTGCTCCTTGAGGGCGAGGGTGACGCGGACGCCATCGGCGGGGGTCTGGATCAGGGCGCGGAGGGTTTCAATGAGGCGGTGGAGGGTTTTGGGGAGGGAATCCGGGTCGGATGTGAAGAGCGGGTCGGAGAACTCTTCGAGGAAGATGATGAGCTGGAGCTTCAGAGGGAATTCGCGCTTGTTGAGACAAGAGAGGGCTTGGTCGATGAGGATTGTGTGTGCAGAGGTCCACCGGTGGCGGCGTGCGCTGCCGTGCTGGAAATCGTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.2

Weight (kDa)

4.28

Isoelectric Point (pI)

32.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008161)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g19010
rosa_laevigata	RLG00000010207 RLG00000028896 RLG00000030957
rosa_multiflora	Rmu_sc0000918.1_g000026 Rmu_ssc0000368.1_g000057
rosa_samantha	Rh2BG530700 Rh2CG303600 Rh2DG339700 Rh2DG362700 Rh2DG539700 Rh3BG250000 Rh4DG034400 Rh4DG254100 Rh5BG047900 Rh5BG259600 Rh5CG093100 Rh6BG417800 Rh6CG294300 Rh6CG374600 Rh6DG286300 Rh7AG414300 Rh7BG210000 Rh7DG409900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	214
AccII	CGCG	4 cut(s)	75, 119, 152, 269
AciI	CCGC	7 cut(s)	75, 119, 132, 152, 170, 214, 332
AclWI	GGATC	1 cut(s)	150
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	132
AgeI	ACCGGT	1 cut(s)	325
AgsI	TTSAA	2 cut(s)	7, 163
AluBI	AGCT	2 cut(s)	247, 253
AluI	AGCT	2 cut(s)	247, 253
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	341
ApoI	RAATTY	1 cut(s)	263
AsiGI	ACCGGT	1 cut(s)	325
AspLEI	GCGC	3 cut(s)	152, 271, 341
AspS9I	GGNCC	1 cut(s)	320
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	89, 125
AvaII	GGWCC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	2 cut(s)	6, 134
BceAI	ACGGC	1 cut(s)	329
BcnI	CCSGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	272
BisI	GCNGC	2 cut(s)	333, 342
BlsI	GCNGC	2 cut(s)	334, 343
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	320
BmrFI	CCNGG	1 cut(s)	197
BpmI	CTGGAG	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse118I	RCCGGY	1 cut(s)	325
BseGI	GGATG	1 cut(s)	209
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	328
BsgI	GTGCAG	1 cut(s)	334
Bsh1236I	CGCG	4 cut(s)	75, 119, 152, 269
BshTI	ACCGGT	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	196, 326
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	272
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	7 cut(s)	75, 119, 132, 152, 170, 214, 332
BspFNI	CGCG	4 cut(s)	75, 119, 152, 269
BspPI	GGATC	1 cut(s)	150
BspQI	GCTCTTC	1 cut(s)	204
BsrBI	CCGCTC	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	325
BssAI	RCCGGY	1 cut(s)	325
BssMI	GATC	1 cut(s)	142
BssNI	GRCGYC	1 cut(s)	123
Bst6I	CTCTTC	2 cut(s)	204, 233
BstACI	GRCGYC	1 cut(s)	123
BstAPI	GCANNNNNTGC	2 cut(s)	59, 94
BstC8I	GCNNGC	1 cut(s)	337
BstF5I	GGATG	1 cut(s)	209
BstFNI	CGCG	4 cut(s)	75, 119, 152, 269
BstHHI	GCGC	3 cut(s)	152, 271, 341
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 94, 338, 341
BstSCI	CCNGG	1 cut(s)	195
BstUI	CGCG	4 cut(s)	75, 119, 152, 269
BstV1I	GCAGC	1 cut(s)	328
BtgZI	GCGATG	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	209
Cac8I	GCNNGC	1 cut(s)	337
CfoI	GCGC	3 cut(s)	152, 271, 341
Cfr10I	RCCGGY	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	320
CseI	GACGC	2 cut(s)	125, 131
CspAI	ACCGGT	1 cut(s)	325
CviAII	CATG	2 cut(s)	59, 89
CviJI	RGCY	3 cut(s)	247, 253, 291
CviKI_1	RGCY	3 cut(s)	247, 253, 291
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eam1104I	CTCTTC	2 cut(s)	204, 233
EarI	CTCTTC	2 cut(s)	204, 233
Eco47I	GGWCC	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	239
EcoRI	GAATTC	1 cut(s)	263
FaeI	CATG	2 cut(s)	62, 92
FaiI	YATR	4 cut(s)	31, 33, 60, 90
FatI	CATG	2 cut(s)	58, 88
FauI	CCCGC	2 cut(s)	125, 207
Fnu4HI	GCNGC	2 cut(s)	333, 342
FokI	GGATG	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	333, 342
GlaI	GCGC	3 cut(s)	151, 270, 340
GluI	GCNGC	2 cut(s)	333, 342
GsuI	CTGGAG	1 cut(s)	269
HapII	CCGG	2 cut(s)	196, 326
HgaI	GACGC	2 cut(s)	125, 131
HhaI	GCGC	3 cut(s)	152, 271, 341
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	62, 92
Hin6I	GCGC	3 cut(s)	150, 269, 339
HinP1I	GCGC	3 cut(s)	150, 269, 339
HinfI	GANTC	1 cut(s)	192
HpaII	CCGG	2 cut(s)	196, 326
HphI	GGTGA	2 cut(s)	89, 125
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	3 cut(s)	203, 221, 258
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	1 cut(s)	323
HpyCH4V	TGCA	1 cut(s)	315
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 94, 338, 341
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	62, 92
HspAI	GCGC	3 cut(s)	150, 269, 339
Kzo9I	GATC	1 cut(s)	142
LguI	GCTCTTC	1 cut(s)	204
LmnI	GCTCC	2 cut(s)	102, 250
LpnPI	CCDG	6 cut(s)	125, 131, 209, 233, 335, 339
Lsp1109I	GCAGC	1 cut(s)	328
MaeIII	GTNAC	2 cut(s)	77, 113
MalI	GATC	1 cut(s)	144
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	1 cut(s)	142
MboII	GAAGA	3 cut(s)	220, 221, 248
MluCI	AATT	1 cut(s)	263
MmeI	TCCRAC	2 cut(s)	181, 199
MseI	TTAA	1 cut(s)	364
MslI	CAYNNNNRTG	1 cut(s)	75
MspI	CCGG	2 cut(s)	196, 326
MspR9I	CCNGG	1 cut(s)	197
MvnI	CGCG	4 cut(s)	75, 119, 152, 269
MwoI	GCNNNNNNNGC	4 cut(s)	59, 94, 338, 341
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	2 cut(s)	62, 92
NmuCI	GTSAC	2 cut(s)	77, 113
PciSI	GCTCTTC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	192
PinAI	ACCGGT	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	334, 343
PspPI	GGNCC	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	364
SatI	GCNGC	2 cut(s)	333, 342
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	197
SetI	ASST	4 cut(s)	26, 249, 255, 322
SgrAI	CRCCGGYG	1 cut(s)	325
SinI	GGWCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	1 cut(s)	263
SsiI	CCGC	7 cut(s)	75, 119, 132, 152, 170, 214, 332
StyD4I	CCNGG	1 cut(s)	195
TaqI	TCGA	2 cut(s)	231, 297
TasI	AATT	1 cut(s)	263
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	1 cut(s)	192
Tru1I	TTAA	1 cut(s)	364
Tru9I	TTAA	1 cut(s)	364
TseFI	GTSAC	2 cut(s)	77, 113
TseI	GCWGC	1 cut(s)	341
Tsp45I	GTSAC	2 cut(s)	77, 113
TspGWI	ACGGA	2 cut(s)	56, 96
VpaK11BI	GGWCC	1 cut(s)	320
XapI	RAATTY	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.