Rh6CG374600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0008161
Physical Location & Seq
Forward (+)
56064054 .. 56064299
246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG374600.1

Sequence Viewer

Length: 246 bp
ATGAGCTCGGAGTTGGACGAGGAAATCGGGGACCGGCAGAGCGGGCAGGTCTGCTGGGAGTGGAGCCACATGTCGATGTACGATACGTGGGAAGGCTTACGTGACAGCAGAGAGGGAGTAGCCGGAGCTGATCGTCGTGCTCAAACTTCGAGGTCGGAAGCGACGACGGTAGTGGAGGAGGCTCGGCGGTGCTTGATGGCAGAGAAGGCGAAGACTGGGAGTGAGGCGGCGGCTGATTCGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.96

Weight (kDa)

4.59

Isoelectric Point (pI)

80.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 37
AccBSI CCGCTC 1 cut(s) 42
AciI CCGC 4 cut(s) 42, 187, 227, 230
AfaI GTAC 1 cut(s) 80
AflIII ACRYGT 1 cut(s) 69
AluBI AGCT 2 cut(s) 6, 128
AluI AGCT 2 cut(s) 6, 128
Alw21I GWGCWC 2 cut(s) 8, 142
AoxI GGCC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 31
AvaII GGWCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 218
Bbv12I GWGCWC 2 cut(s) 8, 142
BccI CCATC 1 cut(s) 190
BfuAI ACCTGC 1 cut(s) 37
BisI GCNGC 2 cut(s) 228, 231
BlsI GCNGC 2 cut(s) 229, 232
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 2 cut(s) 32, 65
BmrI ACTGGG 1 cut(s) 225
BmuI ACTGGG 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 218
BsaAI YACGTR 2 cut(s) 87, 101
Bse118I RCCGGY 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 220
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 191
BseYI CCCAGC 1 cut(s) 54
BshFI GGCC 1 cut(s) 242
BsiHKAI GWGCWC 2 cut(s) 8, 142
BsiSI CCGG 2 cut(s) 34, 123
BslFI GGGAC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 44
BsnI GGCC 1 cut(s) 242
Bsp1286I GDGCHC 2 cut(s) 8, 142
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 4 cut(s) 42, 187, 227, 230
BspANI GGCC 1 cut(s) 242
BspLI GGNNCC 2 cut(s) 32, 65
BspMI ACCTGC 1 cut(s) 37
BsrBI CCGCTC 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 33
BsrI ACTGG 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 33
BssMI GATC 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 169
BstBAI YACGTR 2 cut(s) 87, 101
BstC8I GCNNGC 1 cut(s) 44
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 3 cut(s) 43, 206, 239
BstNSI RCATGY 1 cut(s) 73
BstV2I GAAGAC 1 cut(s) 218
BsuRI GGCC 1 cut(s) 242
BveI ACCTGC 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 44
Cfr10I RCCGGY 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 79
CviAII CATG 1 cut(s) 70
CviJI RGCY 8 cut(s) 6, 66, 96, 122, 128, 182, 233, 242
CviKI_1 RGCY 8 cut(s) 6, 66, 96, 122, 128, 182, 233, 242
CviQI GTAC 1 cut(s) 79
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 1 cut(s) 73
FaiI YATR 1 cut(s) 71
FaqI GGGAC 1 cut(s) 44
FatI CATG 1 cut(s) 69
FauI CCCGC 1 cut(s) 35
Fnu4HI GCNGC 2 cut(s) 228, 231
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 228, 231
GluI GCNGC 2 cut(s) 228, 231
GsaI CCCAGC 1 cut(s) 58
HaeIII GGCC 1 cut(s) 242
HapII CCGG 2 cut(s) 34, 123
Hin1II CATG 1 cut(s) 73
HinfI GANTC 1 cut(s) 236
HpaII CCGG 2 cut(s) 34, 123
Hpy188I TCNGA 2 cut(s) 10, 157
Hpy99I CGWCG 3 cut(s) 138, 166, 169
HpyAV CCTTC 2 cut(s) 86, 199
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 2 cut(s) 86, 100
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 206, 239
HpySE526I ACGT 2 cut(s) 86, 100
Hsp92II CATG 1 cut(s) 73
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 2 cut(s) 63, 125
LpnPI CCDG 5 cut(s) 32, 40, 47, 136, 201
MaeII ACGT 2 cut(s) 86, 100
MaeIII GTNAC 1 cut(s) 101
MalI GATC 1 cut(s) 132
MbiI CCGCTC 1 cut(s) 42
MboI GATC 1 cut(s) 130
MboII GAAGA 1 cut(s) 223
MhlI GDGCHC 2 cut(s) 8, 142
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 6 cut(s) 13, 106, 144, 169, 172, 217
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 2 cut(s) 34, 123
MwoI GCNNNNNNNGC 3 cut(s) 43, 206, 239
NdeII GATC 1 cut(s) 130
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 2 cut(s) 32, 65
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 101
NspI RCATGY 1 cut(s) 73
PciI ACATGT 1 cut(s) 69
PcsI WCGNNNNNNNCGW 1 cut(s) 161
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 2 cut(s) 229, 232
Ppu21I YACGTR 2 cut(s) 87, 101
PscI ACATGT 1 cut(s) 69
Psp124BI GAGCTC 1 cut(s) 8
PspFI CCCAGC 1 cut(s) 54
PspN4I GGNNCC 2 cut(s) 32, 65
PspPI GGNCC 1 cut(s) 31
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 74
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 2 cut(s) 228, 231
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 1 cut(s) 31
SduI GDGCHC 2 cut(s) 8, 142
SetI ASST 6 cut(s) 8, 51, 89, 103, 130, 155
SinI GGWCC 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 74
SsiI CCGC 4 cut(s) 42, 187, 227, 230
SstI GAGCTC 1 cut(s) 8
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 2 cut(s) 89, 103
TaqI TCGA 2 cut(s) 74, 149
TauI GCSGC 2 cut(s) 230, 233
TfiI GAWTC 1 cut(s) 236
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 31
XceI RCATGY 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.