Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008161

Physical Location & Seq

Genomic Coordinates Reverse (-)

43912761 .. 43918146

Gene Structure 5386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG339700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAGGCGCTACCCATCCCGACGGAGACCTACAAGCTTGGGTTCATCGGAGCAGGTAAAATGGCGGAGAGCATCGCCAGAGGAGTCGTCCGATCAGGCATTCTCCCCCCAAATCGCATCACTACCTCCCACTCCAGCCCCATTCGACGCCAAGCCTTCGAGTCCTTCGGCGTCCGCCTCCTCCCTCGCAACGACAACGTGGTTGAAGAGAGTGATGTCATCATTTTCGTGGTCAAACCTCAAGTTGTCAAAGATGTAGTTTTGCAACTGAGGCCATTGCTTTCCAGAAAGAAGCTGCTTGTTTCAATTGCAGCTGGAGTCAAATTGAAAGATCTCCAGGATTGGGCCAGGTACAGCCGATTTATCAGGGTAATGCCCAATACTCCTTCTGCTGTTGGTGTTGCAGCATCAGAGTGTGAGGAGCAGCTCGACGAAGCCGTCGAGCATGTAGTCGGCGGCGATGATGATAGCGGTGACGGAGAGCATGGTCTGCTCCTTGAGGGCAAGGGAAACGTGGACGCCATCGGCGGGTTTCTGGATCAGGGCGCGGAGGGTTTCGATGAGGCGGTGGAGGGTTTTGGGGAGGGAATCCGGGTCGGATGTGAAGAGCGGGTAGGAGAACTCTTCGAGGAAGACGATGAGCTGGAGCTTCAGAGGGCTTGGTTGATGAGGGTTGGGTTTGCAGAGGCAAGATTTGGAAAAGCCGATGAAAAATTGTTTGATGCAATTACTGGCCTAAGCGGCAGTGGTTCTGCATATATATATTTGGCTATAGAGGCCTTGGCTGATGGAGGAGTTGCTGCAGGTCTACCGCGAGAACTTGCATTGGGTCTAGCATCTCAAACTGTATTAGGAGCAGCATCTATGGCTACTAGTTGGGAAGCATCCAAGTCAGCTAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004735 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0016491 GO:0016645 GO:0016646 GO:0030312 GO:0044424 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 ko01230 map00330 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

F420_oxidored P5CR_dimer

Protein Analysis

301

Amino Acids

32.19

Weight (kDa)

4.78

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F420_oxidored	PF03807	12 - 106	9.3e-18	NADP oxidoreductase coenzyme F420-dependent
P5CR_dimer	PF14748	237 - 291	3e-18	Pyrroline-5-carboxylate reductase dimerisation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008161)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g19010
rosa_laevigata	RLG00000010207 RLG00000028896 RLG00000030957
rosa_multiflora	Rmu_sc0000918.1_g000026 Rmu_ssc0000368.1_g000057
rosa_samantha	Rh2BG530700 Rh2CG303600 Rh2DG339700 Rh2DG362700 Rh2DG539700 Rh3BG250000 Rh4DG034400 Rh4DG254100 Rh5BG047900 Rh5BG259600 Rh5CG093100 Rh6BG417800 Rh6CG294300 Rh6CG374600 Rh6DG286300 Rh7AG414300 Rh7BG210000 Rh7DG409900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
Acc36I	ACCTGC	2 cut(s)	44, 794
AccBSI	CCGCTC	1 cut(s)	610
AccI	GTMKAC	1 cut(s)	808
AccII	CGCG	2 cut(s)	548, 814
AclWI	GGATC	1 cut(s)	546
AcuI	CTGAAG	1 cut(s)	635
AcyI	GRCGYC	3 cut(s)	148, 171, 519
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	2 cut(s)	343, 528
AgsI	TTSAA	3 cut(s)	206, 306, 328
AhlI	ACTAGT	1 cut(s)	872
AjnI	CCWGG	2 cut(s)	336, 347
AluBI	AGCT	7 cut(s)	37, 295, 314, 427, 643, 649, 896
AluI	AGCT	7 cut(s)	37, 295, 314, 427, 643, 649, 896
Alw26I	GTCTC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	546
AoxI	GGCC	4 cut(s)	272, 345, 733, 777
ApeKI	GCWGC	6 cut(s)	295, 311, 404, 424, 800, 857
AspLEI	GCGC	2 cut(s)	10, 548
AspS9I	GGNCC	1 cut(s)	345
AsuC2I	CCSGG	1 cut(s)	593
AsuHPI	GGTGA	1 cut(s)	485
BbsI	GAAGAC	1 cut(s)	639
BbvI	GCAGC	6 cut(s)	282, 323, 416, 436, 787, 869
BccI	CCATC	3 cut(s)	23, 530, 782
BceAI	ACGGC	1 cut(s)	422
BciT130I	CCWGG	2 cut(s)	338, 349
BcnI	CCSGG	1 cut(s)	593
BcoDI	GTCTC	1 cut(s)	20
BcuI	ACTAGT	1 cut(s)	872
BfaI	CTAG	2 cut(s)	833, 873
BfmI	CTRYAG	2 cut(s)	771, 801
BfoI	RGCGCY	1 cut(s)	11
BfuAI	ACCTGC	2 cut(s)	44, 794
BglI	GCCNNNNNGGC	1 cut(s)	741
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	8 cut(s)	296, 312, 405, 425, 457, 742, 801, 858
BlsI	GCNGC	8 cut(s)	297, 313, 406, 426, 458, 743, 802, 859
Bme1390I	CCNGG	3 cut(s)	338, 349, 593
BmgT120I	GGNCC	1 cut(s)	345
BmrFI	CCNGG	3 cut(s)	338, 349, 593
BmsI	GCATC	7 cut(s)	81, 126, 416, 712, 845, 869, 893
BpiI	GAAGAC	1 cut(s)	639
BpmI	CTGGAG	4 cut(s)	118, 320, 336, 665
Bpu10I	CCTNAGC	1 cut(s)	737
BpuEI	CTTGAG	2 cut(s)	225, 518
BpuMI	CCSGG	1 cut(s)	593
BsaHI	GRCGYC	3 cut(s)	148, 171, 519
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	780
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 528
Bse1I	ACTGG	1 cut(s)	736
Bse3DI	GCAATG	1 cut(s)	275
BseBI	CCWGG	2 cut(s)	338, 349
BseDI	CCNNGG	1 cut(s)	780
BseGI	GGATG	3 cut(s)	15, 605, 884
BseLI	CCNNNNNNNGG	2 cut(s)	343, 528
BseMI	GCAATG	1 cut(s)	275
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	1 cut(s)	736
BseRI	GAGGAG	4 cut(s)	96, 170, 434, 807
BseXI	GCAGC	6 cut(s)	282, 323, 416, 436, 787, 869
Bsh1236I	CGCG	2 cut(s)	548, 814
BshFI	GGCC	4 cut(s)	274, 347, 735, 779
BsiSI	CCGG	1 cut(s)	592
BslI	CCNNNNNNNGG	2 cut(s)	343, 528
BsmAI	GTCTC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	4 cut(s)	274, 347, 735, 779
Bso31I	GGTCTC	1 cut(s)	20
Bsp143I	GATC	3 cut(s)	92, 331, 538
BspANI	GGCC	4 cut(s)	274, 347, 735, 779
BspCNI	CTCAG	1 cut(s)	261
BspFNI	CGCG	2 cut(s)	548, 814
BspMAI	CTGCAG	1 cut(s)	805
BspMI	ACCTGC	2 cut(s)	44, 794
BspPI	GGATC	1 cut(s)	546
BspQI	GCTCTTC	1 cut(s)	600
BspTNI	GGTCTC	1 cut(s)	20
BsrBI	CCGCTC	1 cut(s)	610
BsrDI	GCAATG	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	736
BssECI	CCNNGG	1 cut(s)	780
BssMI	GATC	3 cut(s)	92, 331, 538
BssNI	GRCGYC	3 cut(s)	148, 171, 519
BssT1I	CCWWGG	1 cut(s)	780
Bst2UI	CCWGG	2 cut(s)	338, 349
Bst4CI	ACNGT	1 cut(s)	847
Bst6I	CTCTTC	3 cut(s)	201, 600, 629
BstACI	GRCGYC	3 cut(s)	148, 171, 519
BstAPI	GCANNNNNTGC	1 cut(s)	490
BstDEI	CTNAG	2 cut(s)	269, 737
BstF5I	GGATG	3 cut(s)	15, 605, 884
BstFNI	CGCG	2 cut(s)	548, 814
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	2 cut(s)	10, 548
BstKTI	GATC	3 cut(s)	95, 334, 541
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	3 cut(s)	92, 331, 538
BstMWI	GCNNNNNNNGC	5 cut(s)	271, 490, 741, 776, 866
BstNI	CCWGG	2 cut(s)	338, 349
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	3 cut(s)	336, 347, 591
BstSFI	CTRYAG	2 cut(s)	771, 801
BstUI	CGCG	2 cut(s)	548, 814
BstV1I	GCAGC	6 cut(s)	282, 323, 416, 436, 787, 869
BstV2I	GAAGAC	1 cut(s)	639
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	4 cut(s)	274, 347, 735, 779
BtgZI	GCGATG	2 cut(s)	58, 474
BtsCI	GGATG	3 cut(s)	15, 605, 884
BtsI	GCAGTG	1 cut(s)	751
BtsIMutI	CAGTG	1 cut(s)	751
BveI	ACCTGC	2 cut(s)	44, 794
CfoI	GCGC	2 cut(s)	10, 548
Cfr13I	GGNCC	1 cut(s)	345
CseI	GACGC	3 cut(s)	156, 160, 527
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	2 cut(s)	446, 485
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	2 cut(s)	269, 737
DpnI	GATC	3 cut(s)	94, 333, 540
DpnII	GATC	3 cut(s)	92, 331, 538
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
Eam1104I	CTCTTC	3 cut(s)	201, 600, 629
EarI	CTCTTC	3 cut(s)	201, 600, 629
EciI	GGCGGA	2 cut(s)	80, 164
Eco130I	CCWWGG	1 cut(s)	780
Eco147I	AGGCCT	1 cut(s)	779
Eco31I	GGTCTC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	635
EcoRII	CCWGG	2 cut(s)	336, 347
EcoT14I	CCWWGG	1 cut(s)	780
ErhI	CCWWGG	1 cut(s)	780
FaeI	CATG	2 cut(s)	449, 488
FaiI	YATR	8 cut(s)	447, 486, 757, 759, 761, 763, 773, 866
FatI	CATG	2 cut(s)	445, 484
FauI	CCCGC	2 cut(s)	521, 603
FblI	GTMKAC	1 cut(s)	808
Fnu4HI	GCNGC	8 cut(s)	296, 312, 405, 425, 457, 742, 801, 858
FokI	GGATG	3 cut(s)	2, 612, 871
Fsp4HI	GCNGC	8 cut(s)	296, 312, 405, 425, 457, 742, 801, 858
FspBI	CTAG	2 cut(s)	833, 873
GlaI	GCGC	2 cut(s)	9, 547
GluI	GCNGC	8 cut(s)	296, 312, 405, 425, 457, 742, 801, 858
GsuI	CTGGAG	4 cut(s)	118, 320, 336, 665
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	4 cut(s)	274, 347, 735, 779
HapII	CCGG	1 cut(s)	592
HgaI	GACGC	3 cut(s)	156, 160, 527
HhaI	GCGC	2 cut(s)	10, 548
Hin1I	GRCGYC	3 cut(s)	148, 171, 519
Hin1II	CATG	2 cut(s)	449, 488
Hin6I	GCGC	2 cut(s)	8, 546
HinP1I	GCGC	2 cut(s)	8, 546
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	4 cut(s)	84, 161, 318, 588
HpaII	CCGG	1 cut(s)	592
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	2 cut(s)	517, 809
Hpy188I	TCNGA	5 cut(s)	50, 92, 412, 599, 654
Hpy188III	TCNNGA	3 cut(s)	19, 285, 536
Hpy8I	GTNNAC	2 cut(s)	517, 809
Hpy99I	CGWCG	4 cut(s)	25, 150, 434, 443
HpyAV	CCTTC	3 cut(s)	166, 175, 396
HpyCH4III	ACNGT	1 cut(s)	847
HpyCH4IV	ACGT	2 cut(s)	198, 513
HpyCH4V	TGCA	8 cut(s)	265, 311, 404, 683, 725, 755, 803, 824
HpyF10VI	GCNNNNNNNGC	5 cut(s)	271, 490, 741, 776, 866
HpyF3I	CTNAG	2 cut(s)	269, 737
HpySE526I	ACGT	2 cut(s)	198, 513
Hsp92I	GRCGYC	3 cut(s)	148, 171, 519
Hsp92II	CATG	2 cut(s)	449, 488
HspAI	GCGC	2 cut(s)	8, 546
Kzo9I	GATC	3 cut(s)	92, 331, 538
LguI	GCTCTTC	1 cut(s)	600
LmnI	GCTCC	5 cut(s)	50, 421, 498, 646, 854
Lsp1109I	GCAGC	6 cut(s)	282, 323, 416, 436, 787, 869
LweI	GCATC	7 cut(s)	81, 126, 416, 712, 845, 869, 893
MaeI	CTAG	2 cut(s)	833, 873
MaeII	ACGT	2 cut(s)	198, 513
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	3 cut(s)	94, 333, 540
MbiI	CCGCTC	1 cut(s)	610
MboI	GATC	3 cut(s)	92, 331, 538
MboII	GAAGA	4 cut(s)	218, 616, 617, 644
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	4 cut(s)	306, 323, 713, 726
MlyI	GAGTC	3 cut(s)	93, 170, 327
MmeI	TCCRAC	1 cut(s)	577
MslI	CAYNNNNRTG	2 cut(s)	227, 412
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	1 cut(s)	592
MspR9I	CCNGG	3 cut(s)	338, 349, 593
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	99
MvaI	CCWGG	2 cut(s)	338, 349
MvnI	CGCG	2 cut(s)	548, 814
MwoI	GCNNNNNNNGC	5 cut(s)	271, 490, 741, 776, 866
NciI	CCSGG	1 cut(s)	593
NdeII	GATC	3 cut(s)	92, 331, 538
NlaIII	CATG	2 cut(s)	449, 488
NmuCI	GTSAC	1 cut(s)	473
NspI	RCATGY	1 cut(s)	449
PceI	AGGCCT	1 cut(s)	779
PciSI	GCTCTTC	1 cut(s)	600
PcsI	WCGNNNNNNNCGW	3 cut(s)	435, 438, 633
PctI	GAATGC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	588
PfoI	TCCNGGA	1 cut(s)	336
PkrI	GCNGC	8 cut(s)	297, 313, 406, 426, 458, 743, 802, 859
PleI	GAGTC	3 cut(s)	92, 169, 326
PpsI	GAGTC	3 cut(s)	92, 169, 326
Psp6I	CCWGG	2 cut(s)	336, 347
PspGI	CCWGG	2 cut(s)	336, 347
PspPI	GGNCC	1 cut(s)	345
PstI	CTGCAG	1 cut(s)	805
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	2 cut(s)	227, 412
SapI	GCTCTTC	1 cut(s)	600
SatI	GCNGC	8 cut(s)	296, 312, 405, 425, 457, 742, 801, 858
Sau3AI	GATC	3 cut(s)	92, 331, 538
Sau96I	GGNCC	1 cut(s)	345
SchI	GAGTC	3 cut(s)	93, 170, 327
ScrFI	CCNGG	3 cut(s)	338, 349, 593
SfaNI	GCATC	7 cut(s)	81, 126, 416, 712, 845, 869, 893
SfcI	CTRYAG	2 cut(s)	771, 801
SmiMI	CAYNNNNRTG	2 cut(s)	227, 412
SmlI	CTYRAG	2 cut(s)	240, 497
SmoI	CTYRAG	2 cut(s)	240, 497
SpeI	ACTAGT	1 cut(s)	872
Sse9I	AATT	4 cut(s)	306, 323, 713, 726
SseBI	AGGCCT	1 cut(s)	779
SspMI	CTAG	2 cut(s)	833, 873
StuI	AGGCCT	1 cut(s)	779
StyD4I	CCNGG	3 cut(s)	336, 347, 591
StyI	CCWWGG	1 cut(s)	780
TaaI	ACNGT	1 cut(s)	847
TaiI	ACGT	2 cut(s)	201, 516
TaqI	TCGA	6 cut(s)	145, 159, 429, 441, 558, 627
TasI	AATT	4 cut(s)	306, 323, 713, 726
TauI	GCSGC	2 cut(s)	459, 744
TfiI	GAWTC	1 cut(s)	588
TscAI	CASTG	1 cut(s)	751
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	6 cut(s)	295, 311, 404, 424, 800, 857
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	2 cut(s)	34, 723
TspGWI	ACGGA	2 cut(s)	38, 492
TspRI	CASTG	1 cut(s)	751
XceI	RCATGY	1 cut(s)	449
XmiI	GTMKAC	1 cut(s)	808
XspI	CTAG	2 cut(s)	833, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.