Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008161

Physical Location & Seq

Genomic Coordinates Forward (+)

64248989 .. 64249441

Gene Structure 453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG417800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTTGTGTTTGTGATCAGGTTTTGGATATTGGACGTGGCCAACAACATGTTACAAGGCCCCTGTCACGCTTTTTTGGCCGACATCTCCGGTTCCGACACGAAGAAGATGAGGACAGCCAATGCCATGTACTCATTCTTCATGGCTGTCGGAAATGTGCTTGGCTACGTCGCCGGATCGTTGAAGAATCTGCACAAGGTGTTCCCTTTCACCATAACCAAAGCCTGTGATGTTTACTGCGCGAATCTTAAAAGCTATTTTTTCATATCCATTGCTCTACTTCTGATACTCACCTTGTTGGTTATGGTATCCATACGTGAGAAAACAATTCCTAGTAACGATAAAGGTGAGGGAGGAGTGATGTTCTTCGGACAAATTATGGGTGCTTTTAAAGAGTTGAAGAAGCCGATGTGGATCTTGCTTTTGGTGACTTGCTTGAACTGGATTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008506 GO:0008515 GO:0008643 GO:0009669 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015154 GO:0015157 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_2

Protein Analysis

150

Amino Acids

16.77

Weight (kDa)

9.28

Isoelectric Point (pI)

21.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0008161)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g19010
rosa_laevigata	RLG00000010207 RLG00000028896 RLG00000030957
rosa_multiflora	Rmu_sc0000918.1_g000026 Rmu_ssc0000368.1_g000057
rosa_samantha	Rh2BG530700 Rh2CG303600 Rh2DG339700 Rh2DG362700 Rh2DG539700 Rh3BG250000 Rh4DG034400 Rh4DG254100 Rh5BG047900 Rh5BG259600 Rh5CG093100 Rh6BG417800 Rh6CG294300 Rh6CG374600 Rh6DG286300 Rh7AG414300 Rh7BG210000 Rh7DG409900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	242
AclWI	GGATC	2 cut(s)	184, 422
AcoI	YGGCCR	2 cut(s)	39, 78
AdeI	CACNNNGTG	1 cut(s)	199
AfaI	GTAC	1 cut(s)	131
AflIII	ACRYGT	1 cut(s)	48
AgsI	TTSAA	3 cut(s)	184, 400, 439
AjiI	CACGTC	1 cut(s)	37
AluBI	AGCT	1 cut(s)	255
AluI	AGCT	1 cut(s)	255
AlwI	GGATC	2 cut(s)	184, 422
AoxI	GGCC	3 cut(s)	39, 58, 78
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	1 cut(s)	59
AsuHPI	GGTGA	4 cut(s)	202, 283, 359, 439
BalI	TGGCCA	1 cut(s)	41
BarI	GAAGNNNNNNTAC	2 cut(s)	122, 154
BciVI	GTATCC	1 cut(s)	319
BclI	TGATCA	1 cut(s)	15
BfaI	CTAG	1 cut(s)	333
BfuI	GTATCC	1 cut(s)	319
BmgBI	CACGTC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	2 cut(s)	61, 94
BsaAI	YACGTR	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	413
BsaWI	WCCGGW	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	446
Bse3DI	GCAATG	1 cut(s)	270
Bse8I	GATNNNNATC	1 cut(s)	413
BseJI	GATNNNNATC	1 cut(s)	413
BseMI	GCAATG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	446
BseRI	GAGGAG	1 cut(s)	369
BsgI	GTGCAG	1 cut(s)	176
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	3 cut(s)	41, 60, 80
BsiSI	CCGG	2 cut(s)	90, 174
BsnI	GGCC	3 cut(s)	41, 60, 80
Bsp143I	GATC	3 cut(s)	15, 176, 414
BspANI	GGCC	3 cut(s)	41, 60, 80
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	2 cut(s)	61, 94
BspPI	GGATC	2 cut(s)	184, 422
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	446
BssMI	GATC	3 cut(s)	15, 176, 414
BstBAI	YACGTR	1 cut(s)	317
BstFNI	CGCG	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	3 cut(s)	18, 179, 417
BstMBI	GATC	3 cut(s)	15, 176, 414
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	52
BstUI	CGCG	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BsuI	GTATCC	1 cut(s)	319
BsuRI	GGCC	3 cut(s)	41, 60, 80
BtrI	CACGTC	1 cut(s)	37
CfoI	GCGC	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	3 cut(s)	49, 127, 142
CviJI	RGCY	9 cut(s)	41, 60, 80, 119, 146, 165, 224, 255, 406
CviKI_1	RGCY	9 cut(s)	41, 60, 80, 119, 146, 165, 224, 255, 406
CviQI	GTAC	1 cut(s)	130
DpnI	GATC	3 cut(s)	17, 178, 416
DpnII	GATC	3 cut(s)	15, 176, 414
DraI	TTTAAA	1 cut(s)	391
DraIII	CACNNNGTG	1 cut(s)	199
EaeI	YGGCCR	2 cut(s)	39, 78
EcoO109I	RGGNCCY	1 cut(s)	59
FaeI	CATG	3 cut(s)	52, 130, 145
FaiI	YATR	9 cut(s)	50, 128, 143, 215, 266, 305, 314, 380, 451
FatI	CATG	3 cut(s)	48, 126, 141
FbaI	TGATCA	1 cut(s)	15
FspBI	CTAG	1 cut(s)	333
GlaI	GCGC	1 cut(s)	241
HaeIII	GGCC	3 cut(s)	41, 60, 80
HapII	CCGG	2 cut(s)	90, 174
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	3 cut(s)	52, 130, 145
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HinfI	GANTC	2 cut(s)	187, 244
HpaII	CCGG	2 cut(s)	90, 174
HphI	GGTGA	4 cut(s)	202, 283, 359, 439
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	4 cut(s)	97, 152, 285, 371
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	173
HpyCH4IV	ACGT	3 cut(s)	36, 168, 316
HpyCH4V	TGCA	2 cut(s)	193, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpySE526I	ACGT	3 cut(s)	36, 168, 316
Hsp92II	CATG	3 cut(s)	52, 130, 145
HspAI	GCGC	1 cut(s)	240
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	3 cut(s)	15, 176, 414
LpnPI	CCDG	6 cut(s)	4, 76, 103, 187, 238, 427
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	3 cut(s)	36, 168, 316
MaeIII	GTNAC	4 cut(s)	51, 65, 335, 427
MalI	GATC	3 cut(s)	17, 178, 416
MboI	GATC	3 cut(s)	15, 176, 414
MboII	GAAGA	6 cut(s)	115, 118, 130, 196, 358, 412
MflI	RGATCY	1 cut(s)	414
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	2 cut(s)	327, 375
MluNI	TGGCCA	1 cut(s)	41
MmeI	TCCRAC	2 cut(s)	120, 130
MnlI	CCTC	3 cut(s)	105, 343, 347
Mox20I	TGGCCA	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	2 cut(s)	249, 390
Msp20I	TGGCCA	1 cut(s)	41
MspI	CCGG	2 cut(s)	90, 174
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	3 cut(s)	15, 176, 414
NlaIII	CATG	3 cut(s)	52, 130, 145
NlaIV	GGNNCC	2 cut(s)	61, 94
NmuCI	GTSAC	2 cut(s)	65, 427
NspI	RCATGY	1 cut(s)	52
PciI	ACATGT	1 cut(s)	48
PfeI	GAWTC	2 cut(s)	187, 244
Ppu21I	YACGTR	1 cut(s)	317
PscI	ACATGT	1 cut(s)	48
PspN4I	GGNNCC	2 cut(s)	61, 94
PspPI	GGNCC	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	414
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SaqAI	TTAA	2 cut(s)	249, 390
Sau3AI	GATC	3 cut(s)	15, 176, 414
Sau96I	GGNCC	1 cut(s)	59
SetI	ASST	8 cut(s)	23, 39, 171, 201, 257, 296, 319, 349
Sse9I	AATT	2 cut(s)	327, 375
SspMI	CTAG	1 cut(s)	333
TaiI	ACGT	3 cut(s)	39, 171, 319
TasI	AATT	2 cut(s)	327, 375
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	2 cut(s)	187, 244
Tru1I	TTAA	2 cut(s)	249, 390
Tru9I	TTAA	2 cut(s)	249, 390
TseFI	GTSAC	2 cut(s)	65, 427
Tsp45I	GTSAC	2 cut(s)	65, 427
TspDTI	ATGAA	2 cut(s)	130, 253
XceI	RCATGY	1 cut(s)	52
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.