RLG00000030957

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008161
Physical Location & Seq
Reverse (-)
890933 .. 891412
480 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030957

Sequence Viewer

Length: 381 bp
ATGAGCTCGGAGTCGGACGTGGAAATCGGCGACCGGCAGAGCGGGCAGAGGCAGACGACGCAGTCGGCGGCTACTACCGCAGTGGAGGAGGCTCGGCGGTGCTTGATGGCGGAGAAGGAGAAGACCGGGAGAGAGGCGATCGGATCTGCGGCGGCAGCGGATTCGGTCGGAGATACTCGAGCGGGGGCGTCGTCGCCGAAAGAGGGAGTCCGGGTAGGATGTGAAGAGCGGGTCGGAGAATTCTTCAAGGAAGACGATGAGTTGGAGCTTGAGAGGGAATTCTCGCTTGTTGAGACAAGAGAGGGTTTGGTCGATGATGATTGGGTGGGCGGAGGTCCAGCGATGGCGGCGCGCCCCCCCATTCTGGAAATCGTCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.49

Weight (kDa)

4.38

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 61
AccBSI CCGCTC 3 cut(s) 42, 182, 229
AccII CGCG 1 cut(s) 352
AclWI GGATC 1 cut(s) 151
AcsI RAATTY 2 cut(s) 239, 278
AcyI GRCGYC 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 203, 364
AgsI TTSAA 1 cut(s) 247
AjiI CACGTC 1 cut(s) 19
AluBI AGCT 2 cut(s) 6, 268
AluI AGCT 2 cut(s) 6, 268
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 287
AlwI GGATC 1 cut(s) 151
Ama87I CYCGRG 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 2 cut(s) 239, 278
AscI GGCGCGCC 1 cut(s) 350
AspLEI GCGC 2 cut(s) 352, 354
AspS9I GGNCC 1 cut(s) 335
AsuC2I CCSGG 2 cut(s) 127, 212
AvaI CYCGRG 1 cut(s) 177
AvaII GGWCC 1 cut(s) 335
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 2 cut(s) 128, 258
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 167
BccI CCATC 2 cut(s) 100, 337
BcgI CGANNNNNNTGC 2 cut(s) 144, 178
BcnI CCSGG 2 cut(s) 127, 212
BcoDI GTCTC 1 cut(s) 287
BisI GCNGC 5 cut(s) 69, 150, 153, 156, 348
BlsI GCNGC 5 cut(s) 70, 151, 154, 157, 349
Bme1390I CCNGG 2 cut(s) 127, 212
Bme18I GGWCC 1 cut(s) 335
BmeT110I CYCGRG 1 cut(s) 177
BmgBI CACGTC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 335
BmrFI CCNGG 2 cut(s) 127, 212
BpiI GAAGAC 2 cut(s) 128, 258
BpuEI CTTGAG 1 cut(s) 290
BpuMI CCSGG 2 cut(s) 127, 212
BsaHI GRCGYC 1 cut(s) 188
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 364
Bse118I RCCGGY 1 cut(s) 33
BseGI GGATG 1 cut(s) 224
BseLI CCNNNNNNNGG 2 cut(s) 203, 364
BsePI GCGCGC 1 cut(s) 350
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 167
Bsh1236I CGCG 1 cut(s) 352
Bsh1285I CGRYCG 3 cut(s) 34, 141, 168
BsiEI CGRYCG 3 cut(s) 34, 141, 168
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 177
BsiSI CCGG 3 cut(s) 34, 126, 211
BslI CCNNNNNNNGG 2 cut(s) 203, 364
BsmAI GTCTC 1 cut(s) 287
BsoBI CYCGRG 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 138, 143
BspFNI CGCG 1 cut(s) 352
BspPI GGATC 1 cut(s) 151
BspQI GCTCTTC 1 cut(s) 219
BsrBI CCGCTC 3 cut(s) 42, 182, 229
BsrFI RCCGGY 1 cut(s) 33
BssAI RCCGGY 1 cut(s) 33
BssHII GCGCGC 1 cut(s) 350
BssMI GATC 2 cut(s) 138, 143
BssNI GRCGYC 1 cut(s) 188
Bst6I CTCTTC 1 cut(s) 219
BstACI GRCGYC 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 44, 352
BstF5I GGATG 1 cut(s) 224
BstFNI CGCG 1 cut(s) 352
BstHHI GCGC 2 cut(s) 352, 354
BstKTI GATC 2 cut(s) 141, 146
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 2 cut(s) 138, 143
BstMCI CGRYCG 3 cut(s) 34, 141, 168
BstMWI GCNNNNNNNGC 5 cut(s) 43, 58, 77, 155, 347
BstSCI CCNGG 2 cut(s) 125, 210
BstUI CGCG 1 cut(s) 352
BstV1I GCAGC 1 cut(s) 167
BstV2I GAAGAC 2 cut(s) 128, 258
BstX2I RGATCY 1 cut(s) 143
BstYI RGATCY 1 cut(s) 143
BtgZI GCGATG 1 cut(s) 356
BtrI CACGTC 1 cut(s) 19
BtsCI GGATG 1 cut(s) 224
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 2 cut(s) 44, 352
CfoI GCGC 2 cut(s) 352, 354
Cfr10I RCCGGY 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 335
CseI GACGC 2 cut(s) 67, 177
CviJI RGCY 4 cut(s) 6, 71, 92, 268
CviKI_1 RGCY 4 cut(s) 6, 71, 92, 268
DpnI GATC 2 cut(s) 140, 145
DpnII GATC 2 cut(s) 138, 143
DrdI GACNNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
EciI GGCGGA 2 cut(s) 125, 345
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 335
Eco53kI GAGCTC 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 177
EcoICRI GAGCTC 1 cut(s) 6
EcoRI GAATTC 2 cut(s) 239, 278
EcoT38I GRGCYC 1 cut(s) 8
FauI CCCGC 3 cut(s) 35, 175, 222
Fnu4HI GCNGC 5 cut(s) 69, 150, 153, 156, 348
FokI GGATG 1 cut(s) 231
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 5 cut(s) 69, 150, 153, 156, 348
GlaI GCGC 2 cut(s) 351, 353
GluI GCNGC 5 cut(s) 69, 150, 153, 156, 348
HapII CCGG 3 cut(s) 34, 126, 211
HgaI GACGC 2 cut(s) 67, 177
HhaI GCGC 2 cut(s) 352, 354
Hin1I GRCGYC 1 cut(s) 188
Hin6I GCGC 2 cut(s) 350, 352
HinP1I GCGC 2 cut(s) 350, 352
HinfI GANTC 3 cut(s) 11, 161, 207
HpaII CCGG 3 cut(s) 34, 126, 211
Hpy188I TCNGA 5 cut(s) 10, 16, 143, 170, 236
Hpy188III TCNNGA 1 cut(s) 365
Hpy99I CGWCG 4 cut(s) 61, 193, 196, 377
HpyAV CCTTC 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 58, 77, 155, 347
HpySE526I ACGT 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 188
HspAI GCGC 2 cut(s) 350, 352
Kzo9I GATC 2 cut(s) 138, 143
LguI GCTCTTC 1 cut(s) 219
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 5 cut(s) 47, 139, 224, 350, 351
Lsp1109I GCAGC 1 cut(s) 167
MaeII ACGT 1 cut(s) 18
MalI GATC 2 cut(s) 140, 145
MbiI CCGCTC 3 cut(s) 42, 182, 229
MboI GATC 2 cut(s) 138, 143
MboII GAAGA 4 cut(s) 133, 235, 236, 263
MflI RGATCY 1 cut(s) 143
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 2 cut(s) 239, 278
MlyI GAGTC 2 cut(s) 20, 216
MmeI TCCRAC 3 cut(s) 148, 214, 243
MnlI CCTC 8 cut(s) 42, 79, 82, 127, 196, 267, 295, 326
MseI TTAA 1 cut(s) 379
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 3 cut(s) 34, 126, 211
MspR9I CCNGG 2 cut(s) 127, 212
MvnI CGCG 1 cut(s) 352
MwoI GCNNNNNNNGC 5 cut(s) 43, 58, 77, 155, 347
NciI CCSGG 2 cut(s) 127, 212
NdeII GATC 2 cut(s) 138, 143
NmeAIII GCCGAG 1 cut(s) 73
PaeR7I CTCGAG 1 cut(s) 177
PalAI GGCGCGCC 1 cut(s) 350
PauI GCGCGC 1 cut(s) 350
PciSI GCTCTTC 1 cut(s) 219
PfeI GAWTC 1 cut(s) 161
PflFI GACNNNGTC 1 cut(s) 61
PkrI GCNGC 5 cut(s) 70, 151, 154, 157, 349
Ple19I CGATCG 1 cut(s) 141
PleI GAGTC 2 cut(s) 19, 215
PpsI GAGTC 2 cut(s) 19, 215
Psp124BI GAGCTC 1 cut(s) 8
PspPI GGNCC 1 cut(s) 335
PspXI VCTCGAGB 1 cut(s) 177
PsuI RGATCY 1 cut(s) 143
PsyI GACNNNGTC 1 cut(s) 61
PteI GCGCGC 1 cut(s) 350
PvuI CGATCG 1 cut(s) 141
SacI GAGCTC 1 cut(s) 8
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 1 cut(s) 379
SatI GCNGC 5 cut(s) 69, 150, 153, 156, 348
Sau3AI GATC 2 cut(s) 138, 143
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 2 cut(s) 20, 216
ScrFI CCNGG 2 cut(s) 127, 212
SduI GDGCHC 1 cut(s) 8
SetI ASST 4 cut(s) 8, 21, 270, 337
Sfr274I CTCGAG 1 cut(s) 177
SgsI GGCGCGCC 1 cut(s) 350
SinI GGWCC 1 cut(s) 335
SlaI CTCGAG 1 cut(s) 177
SmlI CTYRAG 2 cut(s) 177, 269
SmoI CTYRAG 2 cut(s) 177, 269
Sse9I AATT 2 cut(s) 239, 278
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 125, 210
TaiI ACGT 1 cut(s) 21
TaqI TCGA 3 cut(s) 178, 312, 375
TaqII GACCGA 1 cut(s) 154
TasI AATT 2 cut(s) 239, 278
TauI GCSGC 4 cut(s) 71, 152, 155, 350
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 1 cut(s) 379
Tru9I TTAA 1 cut(s) 379
TscAI CASTG 1 cut(s) 87
TseI GCWGC 1 cut(s) 155
TspRI CASTG 1 cut(s) 87
Tth111I GACNNNGTC 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 335
XapI RAATTY 2 cut(s) 239, 278
XhoI CTCGAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.