Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008161

Physical Location & Seq

Genomic Coordinates Reverse (-)

35649041 .. 35654553

Gene Structure 5513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG303600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGAGGCGCTACCCATCCCGACGGAGACCTACAAGCTTGGGTTCATCGGAGCAGGTAAAATGGCGGAGAGCATCGCCAGAGGAGTCGTCCGATCAGGCATTCTCCCCCCAAATCGCATCACTACCTCCCACTCCAGCCCCATTCGACGCCAAGCCTTCGAGTCCTTCGGCGTCCGCCTCCTCCCTCGCAACGACAACGTGGTTGAAGAGAGTGATGTCATCATTTTCGTGGTCAAACCTCAAGTTGTCAAAGATGTAGTTTTGCAACTGAGGCCATTGCTTTCCAGAAAGAAGCTGCTTGTTTCAATTGCAGCTGGAGTCAAATTGAAAGATCTCCAGGATTGGGCCAGGTACAGCCGATTTATCAGGGTAATGCCCAATACTCCTTCTGCTGTTGGTGTTGCAGCATCAGAGTGTGAGGAGCAGCTCGACGAAGCCGTCGAGCATGTAGTCGGCGGCGATGATGATAGCGGTGACGGAGAGCATGGTCTGCTCCTTGAGGGCAAGGGAAACGTGGACGCCATCGGCGGGTTTCTGGATCAGGGCGCGGAGGGTTTCGATGAGGCGGTGGAGGGTTTTGGGGAGGGAATCCGGGTCGGATGTGAAGAGCGGGTAGGAGAACTCTTCGAGGAAGACGATGAGCTGGAGCTTCAGAGGGCTTGGTTGATGAGGGTTGGGTTTGCAGAGGTTTTGGAGCTTGATGTGGCTCCAGATCTGCTTCACGGCCTCGGCGCGAGAGCACTCAAGGGCGCCACCGAGGAAGCTGCCGAGAGCTGGAGAGATCGGAGTCGGCTTCAGAATGGCAGCGTTCCTGTTGACGTTTCTCTTGGGCTTGATCGCGCAAGATTTGGAAAAGCCGATGAAAAATTGTTTGATGCAATTACTGGCCTAAGCGGCAGTGGTTCTGCATATATATATTTGGCTATAGAGGCCTTGGCTGATGGAGGAGTTGCTGCAGGTCTACCGCGAGAACTTGCATTGGGTCTAGCATCTCAAACTGAGCAGCATCTATGGCTACTAGTTGGGAAGCATCCAAGTCAGCTAAAAGATGATGTAACATCACCTGGTGGAACTACCATTACTGGCATTCATGAGCTGGAGAAGGGTGGATTTCGTGGAATATTGATGAATGCAGTTGTTGCTGCAGCCAGGCGCAGCCGAGAACTTTCACAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004735 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0016491 GO:0016645 GO:0016646 GO:0030312 GO:0044424 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 ko01230 map00330 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

F420_oxidored P5CR_dimer

Protein Analysis

392

Amino Acids

42.09

Weight (kDa)

4.9

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F420_oxidored	PF03807	12 - 106	1.5e-17	NADP oxidoreductase coenzyme F420-dependent
P5CR_dimer	PF14748	288 - 389	2.9e-34	Pyrroline-5-carboxylate reductase dimerisation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008161)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g19010
rosa_laevigata	RLG00000010207 RLG00000028896 RLG00000030957
rosa_multiflora	Rmu_sc0000918.1_g000026 Rmu_ssc0000368.1_g000057
rosa_samantha	Rh2BG530700 Rh2CG303600 Rh2DG339700 Rh2DG362700 Rh2DG539700 Rh3BG250000 Rh4DG034400 Rh4DG254100 Rh5BG047900 Rh5BG259600 Rh5CG093100 Rh6BG417800 Rh6CG294300 Rh6CG374600 Rh6DG286300 Rh7AG414300 Rh7BG210000 Rh7DG409900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
Acc36I	ACCTGC	2 cut(s)	44, 947
AccB1I	GGYRCC	1 cut(s)	749
AccBSI	CCGCTC	1 cut(s)	610
AccI	GTMKAC	1 cut(s)	961
AccII	CGCG	4 cut(s)	548, 734, 840, 967
AclWI	GGATC	1 cut(s)	546
AcuI	CTGAAG	2 cut(s)	635, 779
AcyI	GRCGYC	4 cut(s)	148, 171, 519, 750
AdeI	CACNNNGTG	1 cut(s)	1067
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	3 cut(s)	343, 528, 774
AgsI	TTSAA	3 cut(s)	206, 306, 328
AhlI	ACTAGT	1 cut(s)	1018
AjnI	CCWGG	4 cut(s)	336, 347, 1063, 1148
Alw21I	GWGCWC	1 cut(s)	742
Alw26I	GTCTC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	546
AoxI	GGCC	5 cut(s)	272, 345, 724, 886, 930
AspLEI	GCGC	6 cut(s)	10, 548, 734, 752, 842, 1155
AspS9I	GGNCC	1 cut(s)	345
AsuC2I	CCSGG	1 cut(s)	593
AsuHPI	GGTGA	2 cut(s)	485, 1053
BanI	GGYRCC	1 cut(s)	749
BbsI	GAAGAC	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	742
BccI	CCATC	3 cut(s)	23, 530, 935
BceAI	ACGGC	2 cut(s)	422, 739
BcgI	CGANNNNNNTGC	2 cut(s)	746, 780
BciT130I	CCWGG	4 cut(s)	338, 349, 1065, 1150
BcnI	CCSGG	1 cut(s)	593
BcoDI	GTCTC	1 cut(s)	20
BcuI	ACTAGT	1 cut(s)	1018
BfaI	CTAG	3 cut(s)	986, 1019, 1177
BfmI	CTRYAG	3 cut(s)	924, 954, 1143
BfoI	RGCGCY	2 cut(s)	11, 753
BfuAI	ACCTGC	2 cut(s)	44, 947
BglI	GCCNNNNNGGC	1 cut(s)	894
BglII	AGATCT	2 cut(s)	331, 712
Bme1390I	CCNGG	5 cut(s)	338, 349, 593, 1065, 1150
BmgT120I	GGNCC	1 cut(s)	345
BmiI	GGNNCC	2 cut(s)	708, 751
BmrFI	CCNGG	5 cut(s)	338, 349, 593, 1065, 1150
BmsI	GCATC	7 cut(s)	81, 126, 416, 865, 998, 1015, 1039
BpiI	GAAGAC	1 cut(s)	639
BpmI	CTGGAG	7 cut(s)	118, 320, 336, 665, 693, 796, 1118
Bpu10I	CCTNAGC	1 cut(s)	890
BpuEI	CTTGAG	3 cut(s)	225, 518, 728
BpuMI	CCSGG	1 cut(s)	593
BsaHI	GRCGYC	4 cut(s)	148, 171, 519, 750
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	3 cut(s)	727, 756, 933
Bsc4I	CCNNNNNNNGG	3 cut(s)	343, 528, 774
Bse1I	ACTGG	2 cut(s)	889, 1087
Bse3DI	GCAATG	1 cut(s)	275
BseBI	CCWGG	4 cut(s)	338, 349, 1065, 1150
BseDI	CCNNGG	3 cut(s)	727, 756, 933
BseGI	GGATG	3 cut(s)	15, 605, 1030
BseLI	CCNNNNNNNGG	3 cut(s)	343, 528, 774
BseMI	GCAATG	1 cut(s)	275
BseMII	CTCAG	2 cut(s)	260, 990
BseNI	ACTGG	2 cut(s)	889, 1087
BseRI	GAGGAG	4 cut(s)	96, 170, 434, 960
Bsh1236I	CGCG	4 cut(s)	548, 734, 840, 967
BshFI	GGCC	5 cut(s)	274, 347, 726, 888, 932
BshNI	GGYRCC	1 cut(s)	749
BsiHKAI	GWGCWC	1 cut(s)	742
BsiSI	CCGG	1 cut(s)	592
BslI	CCNNNNNNNGG	3 cut(s)	343, 528, 774
BsmAI	GTCTC	1 cut(s)	20
BsmI	GAATGC	3 cut(s)	99, 1086, 1135
BsnI	GGCC	5 cut(s)	274, 347, 726, 888, 932
Bso31I	GGTCTC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	742
Bsp143I	GATC	6 cut(s)	92, 331, 538, 712, 781, 835
BspANI	GGCC	5 cut(s)	274, 347, 726, 888, 932
BspCNI	CTCAG	2 cut(s)	261, 991
BspFNI	CGCG	4 cut(s)	548, 734, 840, 967
BspHI	TCATGA	1 cut(s)	1090
BspLI	GGNNCC	2 cut(s)	708, 751
BspMAI	CTGCAG	2 cut(s)	958, 1147
BspMI	ACCTGC	2 cut(s)	44, 947
BspPI	GGATC	1 cut(s)	546
BspQI	GCTCTTC	1 cut(s)	600
BspT107I	GGYRCC	1 cut(s)	749
BspTNI	GGTCTC	1 cut(s)	20
BsrBI	CCGCTC	1 cut(s)	610
BsrDI	GCAATG	1 cut(s)	275
BsrI	ACTGG	2 cut(s)	889, 1087
BssECI	CCNNGG	3 cut(s)	727, 756, 933
BssMI	GATC	6 cut(s)	92, 331, 538, 712, 781, 835
BssNI	GRCGYC	4 cut(s)	148, 171, 519, 750
BssT1I	CCWWGG	1 cut(s)	933
Bst2UI	CCWGG	4 cut(s)	338, 349, 1065, 1150
Bst6I	CTCTTC	3 cut(s)	201, 600, 629
BstACI	GRCGYC	4 cut(s)	148, 171, 519, 750
BstAPI	GCANNNNNTGC	2 cut(s)	490, 1139
BstDEI	CTNAG	3 cut(s)	269, 890, 999
BstF5I	GGATG	3 cut(s)	15, 605, 1030
BstFNI	CGCG	4 cut(s)	548, 734, 840, 967
BstH2I	RGCGCY	2 cut(s)	11, 753
BstHHI	GCGC	6 cut(s)	10, 548, 734, 752, 842, 1155
BstKTI	GATC	6 cut(s)	95, 334, 541, 715, 784, 838
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	6 cut(s)	92, 331, 538, 712, 781, 835
BstMWI	GCNNNNNNNGC	6 cut(s)	271, 490, 894, 929, 1012, 1139
BstNI	CCWGG	4 cut(s)	338, 349, 1065, 1150
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	5 cut(s)	336, 347, 591, 1063, 1148
BstSFI	CTRYAG	3 cut(s)	924, 954, 1143
BstUI	CGCG	4 cut(s)	548, 734, 840, 967
BstV2I	GAAGAC	1 cut(s)	639
BstX2I	RGATCY	2 cut(s)	331, 712
BstYI	RGATCY	2 cut(s)	331, 712
BsuRI	GGCC	5 cut(s)	274, 347, 726, 888, 932
BtgZI	GCGATG	2 cut(s)	58, 474
BtsCI	GGATG	3 cut(s)	15, 605, 1030
BtsI	GCAGTG	1 cut(s)	904
BtsIMutI	CAGTG	1 cut(s)	904
BveI	ACCTGC	2 cut(s)	44, 947
CciI	TCATGA	1 cut(s)	1090
CfoI	GCGC	6 cut(s)	10, 548, 734, 752, 842, 1155
Cfr13I	GGNCC	1 cut(s)	345
CseI	GACGC	3 cut(s)	156, 160, 527
CsiI	ACCWGGT	1 cut(s)	1063
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	3 cut(s)	446, 485, 1091
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	3 cut(s)	269, 890, 999
DinI	GGCGCC	1 cut(s)	751
DpnI	GATC	6 cut(s)	94, 333, 540, 714, 783, 837
DpnII	GATC	6 cut(s)	92, 331, 538, 712, 781, 835
DraIII	CACNNNGTG	1 cut(s)	1067
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
Eam1104I	CTCTTC	3 cut(s)	201, 600, 629
EarI	CTCTTC	3 cut(s)	201, 600, 629
EciI	GGCGGA	2 cut(s)	80, 164
Eco130I	CCWWGG	1 cut(s)	933
Eco147I	AGGCCT	1 cut(s)	932
Eco31I	GGTCTC	1 cut(s)	20
Eco57I	CTGAAG	2 cut(s)	635, 779
EcoRII	CCWGG	4 cut(s)	336, 347, 1063, 1148
EcoT14I	CCWWGG	1 cut(s)	933
EgeI	GGCGCC	1 cut(s)	751
EheI	GGCGCC	1 cut(s)	751
ErhI	CCWWGG	1 cut(s)	933
FaeI	CATG	3 cut(s)	449, 488, 1094
FaiI	YATR	9 cut(s)	447, 486, 910, 912, 914, 916, 926, 1012, 1092
FatI	CATG	3 cut(s)	445, 484, 1090
FauI	CCCGC	2 cut(s)	521, 603
FblI	GTMKAC	1 cut(s)	961
FokI	GGATG	3 cut(s)	2, 612, 1017
FspBI	CTAG	3 cut(s)	986, 1019, 1177
GlaI	GCGC	6 cut(s)	9, 547, 733, 751, 841, 1154
GsuI	CTGGAG	7 cut(s)	118, 320, 336, 665, 693, 796, 1118
HaeII	RGCGCY	2 cut(s)	11, 753
HaeIII	GGCC	5 cut(s)	274, 347, 726, 888, 932
HapII	CCGG	1 cut(s)	592
HgaI	GACGC	3 cut(s)	156, 160, 527
HhaI	GCGC	6 cut(s)	10, 548, 734, 752, 842, 1155
Hin1I	GRCGYC	4 cut(s)	148, 171, 519, 750
Hin1II	CATG	3 cut(s)	449, 488, 1094
Hin6I	GCGC	6 cut(s)	8, 546, 732, 750, 840, 1153
HinP1I	GCGC	6 cut(s)	8, 546, 732, 750, 840, 1153
HincII	GTYRAC	1 cut(s)	817
HindII	GTYRAC	1 cut(s)	817
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	5 cut(s)	84, 161, 318, 588, 787
HpaII	CCGG	1 cut(s)	592
HphI	GGTGA	2 cut(s)	485, 1053
Hpy166II	GTNNAC	3 cut(s)	517, 817, 962
Hpy188I	TCNGA	7 cut(s)	50, 92, 412, 599, 654, 786, 798
Hpy188III	TCNNGA	5 cut(s)	19, 285, 536, 710, 1091
Hpy8I	GTNNAC	3 cut(s)	517, 817, 962
Hpy99I	CGWCG	4 cut(s)	25, 150, 434, 443
HpyAV	CCTTC	4 cut(s)	166, 175, 396, 1096
HpyCH4IV	ACGT	3 cut(s)	198, 513, 819
HpyF10VI	GCNNNNNNNGC	6 cut(s)	271, 490, 894, 929, 1012, 1139
HpyF3I	CTNAG	3 cut(s)	269, 890, 999
HpySE526I	ACGT	3 cut(s)	198, 513, 819
Hsp92I	GRCGYC	4 cut(s)	148, 171, 519, 750
Hsp92II	CATG	3 cut(s)	449, 488, 1094
HspAI	GCGC	6 cut(s)	8, 546, 732, 750, 840, 1153
KasI	GGCGCC	1 cut(s)	749
Kzo9I	GATC	6 cut(s)	92, 331, 538, 712, 781, 835
LguI	GCTCTTC	1 cut(s)	600
LmnI	GCTCC	6 cut(s)	50, 421, 498, 646, 694, 712
LweI	GCATC	7 cut(s)	81, 126, 416, 865, 998, 1015, 1039
MabI	ACCWGGT	1 cut(s)	1063
MaeI	CTAG	3 cut(s)	986, 1019, 1177
MaeII	ACGT	3 cut(s)	198, 513, 819
MaeIII	GTNAC	2 cut(s)	473, 1054
MalI	GATC	6 cut(s)	94, 333, 540, 714, 783, 837
MbiI	CCGCTC	1 cut(s)	610
MboI	GATC	6 cut(s)	92, 331, 538, 712, 781, 835
MboII	GAAGA	4 cut(s)	218, 616, 617, 644
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	2 cut(s)	331, 712
MhlI	GDGCHC	1 cut(s)	742
MluCI	AATT	4 cut(s)	306, 323, 866, 879
Mly113I	GGCGCC	1 cut(s)	750
MlyI	GAGTC	4 cut(s)	93, 170, 327, 796
MmeI	TCCRAC	1 cut(s)	577
MslI	CAYNNNNRTG	2 cut(s)	227, 412
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	1 cut(s)	592
MspR9I	CCNGG	5 cut(s)	338, 349, 593, 1065, 1150
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	3 cut(s)	99, 1086, 1135
MvaI	CCWGG	4 cut(s)	338, 349, 1065, 1150
MvnI	CGCG	4 cut(s)	548, 734, 840, 967
MwoI	GCNNNNNNNGC	6 cut(s)	271, 490, 894, 929, 1012, 1139
NarI	GGCGCC	1 cut(s)	750
NciI	CCSGG	1 cut(s)	593
NdeII	GATC	6 cut(s)	92, 331, 538, 712, 781, 835
NlaIII	CATG	3 cut(s)	449, 488, 1094
NlaIV	GGNNCC	2 cut(s)	708, 751
NmeAIII	GCCGAG	2 cut(s)	708, 793
NmuCI	GTSAC	1 cut(s)	473
NspI	RCATGY	1 cut(s)	449
PagI	TCATGA	1 cut(s)	1090
PceI	AGGCCT	1 cut(s)	932
PciSI	GCTCTTC	1 cut(s)	600
PcsI	WCGNNNNNNNCGW	3 cut(s)	435, 438, 633
PctI	GAATGC	3 cut(s)	99, 1086, 1135
PfeI	GAWTC	1 cut(s)	588
PfoI	TCCNGGA	1 cut(s)	336
PleI	GAGTC	4 cut(s)	92, 169, 326, 795
PluTI	GGCGCC	1 cut(s)	753
PpsI	GAGTC	4 cut(s)	92, 169, 326, 795
Psp6I	CCWGG	4 cut(s)	336, 347, 1063, 1148
PspGI	CCWGG	4 cut(s)	336, 347, 1063, 1148
PspN4I	GGNNCC	2 cut(s)	708, 751
PspPI	GGNCC	1 cut(s)	345
PsrI	GAACNNNNNNTAC	2 cut(s)	1063, 1095
PstI	CTGCAG	2 cut(s)	958, 1147
PsuI	RGATCY	2 cut(s)	331, 712
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	2 cut(s)	227, 412
SapI	GCTCTTC	1 cut(s)	600
Sau3AI	GATC	6 cut(s)	92, 331, 538, 712, 781, 835
Sau96I	GGNCC	1 cut(s)	345
SchI	GAGTC	4 cut(s)	93, 170, 327, 796
ScrFI	CCNGG	5 cut(s)	338, 349, 593, 1065, 1150
SduI	GDGCHC	1 cut(s)	742
SexAI	ACCWGGT	1 cut(s)	1063
SfaNI	GCATC	7 cut(s)	81, 126, 416, 865, 998, 1015, 1039
SfcI	CTRYAG	3 cut(s)	924, 954, 1143
SfoI	GGCGCC	1 cut(s)	751
SmiMI	CAYNNNNRTG	2 cut(s)	227, 412
SmlI	CTYRAG	3 cut(s)	240, 497, 743
SmoI	CTYRAG	3 cut(s)	240, 497, 743
SpeI	ACTAGT	1 cut(s)	1018
Sse9I	AATT	4 cut(s)	306, 323, 866, 879
SseBI	AGGCCT	1 cut(s)	932
SspDI	GGCGCC	1 cut(s)	749
SspI	AATATT	1 cut(s)	1122
SspMI	CTAG	3 cut(s)	986, 1019, 1177
StuI	AGGCCT	1 cut(s)	932
StyD4I	CCNGG	5 cut(s)	336, 347, 591, 1063, 1148
StyI	CCWWGG	1 cut(s)	933
TaiI	ACGT	3 cut(s)	201, 516, 822
TaqI	TCGA	6 cut(s)	145, 159, 429, 441, 558, 627
TasI	AATT	4 cut(s)	306, 323, 866, 879
TauI	GCSGC	2 cut(s)	459, 897
TfiI	GAWTC	1 cut(s)	588
TscAI	CASTG	1 cut(s)	904
TseFI	GTSAC	1 cut(s)	473
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	4 cut(s)	34, 876, 1079, 1142
TspGWI	ACGGA	2 cut(s)	38, 492
TspRI	CASTG	1 cut(s)	904
XceI	RCATGY	1 cut(s)	449
XmiI	GTMKAC	1 cut(s)	961
XspI	CTAG	3 cut(s)	986, 1019, 1177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.