Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000368.1

Orthogroup ID

OG0008161

Physical Location & Seq

Genomic Coordinates Forward (+)

277055 .. 277919

Gene Structure 865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000368.1_g000057.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ctgaacggcaccagaggcaccgtcgtattcaaaatcgaaacgcgcctggaagtcgaagccgtggttggggtggttagtgaccgtgagcagcagctcgaccaggccgtcaagcatgtagtcggctgtgatgacgatggcggtgacggagagcatggtctgctccttgagggcgagggtgatgtggacgccatcggtgggggcttggatcagggcgcggagggtttcgatgaggtggtggagggttttggggagggagtctgggtcggatgtgaagagcgagtcgaagaactcttcgaggaagacaatgagctagagcttgagagggaattcgcgtctgttgagacaagagagggcttggtcgatgatgcttgggtatgcggaggtccaccggtggcggcgttctctcaggttcacacctcactacaattcaatgcttcgcaatctttgtctaaggaagccattgctgggatcttcgacgactccctcgacaaacccaccaaaccacacgccatcgccgtctctgtggtcgggttctgcgtgttctgctgcagacatctccggctccagttccccttcaccatgtccaaagcctgcaacgtctactgcgccaatctcaaaagctgcctcttcctctccatcgctctcttccccaaattaaggttctggagattgatttgggggaaaaggatcagggaagtgaagggacgaaattaccccccaaaagttaacggagttagcgtttttactgttggcaggtatgaaaattgggtcggggccaaaacttcaggtaccattatgacatttttcaaagtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008506 GO:0008515 GO:0008643 GO:0009669 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015154 GO:0015157 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_2

Protein Analysis

271

Amino Acids

29.76

Weight (kDa)

4.81

Isoelectric Point (pI)

24.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008161)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g19010
rosa_laevigata	RLG00000010207 RLG00000028896 RLG00000030957
rosa_multiflora	Rmu_sc0000918.1_g000026 Rmu_ssc0000368.1_g000057
rosa_samantha	Rh2BG530700 Rh2CG303600 Rh2DG339700 Rh2DG362700 Rh2DG539700 Rh3BG250000 Rh4DG034400 Rh4DG254100 Rh5BG047900 Rh5BG259600 Rh5CG093100 Rh6BG417800 Rh6CG294300 Rh6CG374600 Rh6DG286300 Rh7AG414300 Rh7BG210000 Rh7DG409900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	744
Acc65I	GGTACC	1 cut(s)	788
AccB1I	GGYRCC	3 cut(s)	8, 17, 788
AccI	GTMKAC	1 cut(s)	600
AccII	CGCG	3 cut(s)	43, 215, 332
AciI	CCGC	4 cut(s)	138, 215, 378, 395
AclWI	GGATC	3 cut(s)	213, 476, 695
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	1 cut(s)	768
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	1 cut(s)	790
AfiI	CCNNNNNNNGG	4 cut(s)	66, 195, 465, 657
AgeI	ACCGGT	1 cut(s)	388
AgsI	TTSAA	3 cut(s)	31, 430, 808
AjnI	CCWGG	2 cut(s)	45, 99
AjuI	GAANNNNNNNTTGG	4 cut(s)	48, 80, 644, 676
AluBI	AGCT	4 cut(s)	94, 310, 316, 621
AluI	AGCT	4 cut(s)	94, 310, 316, 621
Alw26I	GTCTC	2 cut(s)	335, 523
AlwI	GGATC	3 cut(s)	213, 476, 695
AoxI	GGCC	2 cut(s)	102, 774
ApeKI	GCWGC	4 cut(s)	88, 91, 546, 621
ApoI	RAATTY	1 cut(s)	326
AsiGI	ACCGGT	1 cut(s)	388
Asp718I	GGTACC	1 cut(s)	788
AspLEI	GCGC	3 cut(s)	45, 215, 608
AspS9I	GGNCC	2 cut(s)	383, 774
AsuHPI	GGTGA	3 cut(s)	152, 188, 568
AvaII	GGWCC	1 cut(s)	383
BanI	GGYRCC	3 cut(s)	8, 17, 788
BbsI	GAAGAC	1 cut(s)	306
BbvI	GCAGC	4 cut(s)	100, 103, 533, 608
BccI	CCATC	4 cut(s)	128, 197, 518, 644
BceAI	ACGGC	4 cut(s)	22, 44, 89, 500
BciT130I	CCWGG	2 cut(s)	47, 101
BcoDI	GTCTC	2 cut(s)	335, 523
BfaI	CTAG	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	547
BfuAI	ACCTGC	1 cut(s)	744
BisI	GCNGC	5 cut(s)	89, 92, 396, 547, 622
BlsI	GCNGC	5 cut(s)	90, 93, 397, 548, 623
Bme1390I	CCNGG	2 cut(s)	47, 101
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	2 cut(s)	383, 774
BmiI	GGNNCC	5 cut(s)	10, 19, 563, 775, 790
BmrFI	CCNGG	2 cut(s)	47, 101
BmsI	GCATC	1 cut(s)	355
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	2 cut(s)	548, 685
BpuEI	CTTGAG	2 cut(s)	185, 338
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	60
BsaWI	WCCGGW	1 cut(s)	388
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 723, 753
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 195, 465, 657
Bse118I	RCCGGY	1 cut(s)	388
Bse1I	ACTGG	1 cut(s)	565
Bse3DI	GCAATG	1 cut(s)	459
BseBI	CCWGG	2 cut(s)	47, 101
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	272
BseLI	CCNNNNNNNGG	4 cut(s)	66, 195, 465, 657
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	1 cut(s)	565
BseXI	GCAGC	4 cut(s)	100, 103, 533, 608
BseYI	CCCAGC	1 cut(s)	464
Bsh1236I	CGCG	3 cut(s)	43, 215, 332
BshFI	GGCC	2 cut(s)	104, 776
BshNI	GGYRCC	3 cut(s)	8, 17, 788
BshTI	ACCGGT	1 cut(s)	388
BsiSI	CCGG	2 cut(s)	389, 559
BslFI	GGGAC	1 cut(s)	717
BslI	CCNNNNNNNGG	4 cut(s)	66, 195, 465, 657
BsmAI	GTCTC	2 cut(s)	335, 523
BsmBI	CGTCTC	1 cut(s)	523
BsmFI	GGGAC	1 cut(s)	717
BsnI	GGCC	2 cut(s)	104, 776
Bsp143I	GATC	3 cut(s)	205, 468, 687
BspACI	CCGC	4 cut(s)	138, 215, 378, 395
BspANI	GGCC	2 cut(s)	104, 776
BspCNI	CTCAG	1 cut(s)	418
BspFNI	CGCG	3 cut(s)	43, 215, 332
BspLI	GGNNCC	5 cut(s)	10, 19, 563, 775, 790
BspMAI	CTGCAG	1 cut(s)	551
BspMI	ACCTGC	1 cut(s)	744
BspPI	GGATC	3 cut(s)	213, 476, 695
BspQI	GCTCTTC	1 cut(s)	267
BspT107I	GGYRCC	3 cut(s)	8, 17, 788
BsrDI	GCAATG	1 cut(s)	459
BsrFI	RCCGGY	1 cut(s)	388
BsrI	ACTGG	1 cut(s)	565
BssAI	RCCGGY	1 cut(s)	388
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	3 cut(s)	205, 468, 687
BssNI	GRCGYC	1 cut(s)	186
Bst2UI	CCWGG	2 cut(s)	47, 101
Bst4CI	ACNGT	3 cut(s)	22, 83, 748
Bst6I	CTCTTC	4 cut(s)	267, 296, 632, 650
BstACI	GRCGYC	1 cut(s)	186
BstAPI	GCANNNNNTGC	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	592
BstDEI	CTNAG	2 cut(s)	405, 450
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	272
BstFNI	CGCG	3 cut(s)	43, 215, 332
BstHHI	GCGC	3 cut(s)	45, 215, 608
BstKTI	GATC	3 cut(s)	208, 471, 690
BstMAI	GTCTC	2 cut(s)	335, 523
BstMBI	GATC	3 cut(s)	205, 468, 687
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 157, 543
BstNI	CCWGG	2 cut(s)	47, 101
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	45, 99
BstSFI	CTRYAG	1 cut(s)	547
BstUI	CGCG	3 cut(s)	43, 215, 332
BstV1I	GCAGC	4 cut(s)	100, 103, 533, 608
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	468
BstYI	RGATCY	1 cut(s)	468
BsuRI	GGCC	2 cut(s)	104, 776
BtgI	CCRYGG	1 cut(s)	60
BtgZI	GCGATG	2 cut(s)	496, 622
BtsCI	GGATG	1 cut(s)	272
BveI	ACCTGC	1 cut(s)	744
Cac8I	GCNNGC	1 cut(s)	592
CfoI	GCGC	3 cut(s)	45, 215, 608
Cfr10I	RCCGGY	1 cut(s)	388
Cfr13I	GGNCC	2 cut(s)	383, 774
CseI	GACGC	2 cut(s)	194, 321
Csp6I	GTAC	1 cut(s)	789
CspAI	ACCGGT	1 cut(s)	388
CviAII	CATG	3 cut(s)	113, 152, 580
CviQI	GTAC	1 cut(s)	789
DdeI	CTNAG	2 cut(s)	405, 450
DpnI	GATC	3 cut(s)	207, 470, 689
DpnII	GATC	3 cut(s)	205, 468, 687
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
Eam1104I	CTCTTC	4 cut(s)	267, 296, 632, 650
EarI	CTCTTC	4 cut(s)	267, 296, 632, 650
Eco47I	GGWCC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	768
EcoRI	GAATTC	1 cut(s)	326
EcoRII	CCWGG	2 cut(s)	45, 99
Esp3I	CGTCTC	1 cut(s)	523
FaeI	CATG	3 cut(s)	116, 155, 583
FaiI	YATR	7 cut(s)	114, 153, 376, 581, 759, 797, 814
FaqI	GGGAC	1 cut(s)	717
FatI	CATG	3 cut(s)	112, 151, 579
FblI	GTMKAC	1 cut(s)	600
Fnu4HI	GCNGC	5 cut(s)	89, 92, 396, 547, 622
FokI	GGATG	1 cut(s)	279
Fsp4HI	GCNGC	5 cut(s)	89, 92, 396, 547, 622
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	3 cut(s)	44, 214, 607
GluI	GCNGC	5 cut(s)	89, 92, 396, 547, 622
GsaI	CCCAGC	1 cut(s)	468
GsuI	CTGGAG	2 cut(s)	548, 685
HaeIII	GGCC	2 cut(s)	104, 776
HapII	CCGG	2 cut(s)	389, 559
HgaI	GACGC	2 cut(s)	194, 321
HhaI	GCGC	3 cut(s)	45, 215, 608
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	3 cut(s)	116, 155, 583
Hin6I	GCGC	3 cut(s)	43, 213, 606
HinP1I	GCGC	3 cut(s)	43, 213, 606
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HinfI	GANTC	3 cut(s)	255, 279, 479
HpaI	GTTAAC	1 cut(s)	727
HpaII	CCGG	2 cut(s)	389, 559
HphI	GGTGA	3 cut(s)	152, 188, 568
Hpy166II	GTNNAC	5 cut(s)	184, 386, 412, 601, 727
Hpy188I	TCNGA	1 cut(s)	266
Hpy188III	TCNNGA	1 cut(s)	664
Hpy8I	GTNNAC	5 cut(s)	184, 386, 412, 601, 727
Hpy99I	CGWCG	2 cut(s)	26, 479
HpyAV	CCTTC	2 cut(s)	583, 694
HpyCH4III	ACNGT	3 cut(s)	22, 83, 748
HpyCH4IV	ACGT	1 cut(s)	597
HpyCH4V	TGCA	2 cut(s)	549, 594
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 157, 543
HpyF3I	CTNAG	2 cut(s)	405, 450
HpySE526I	ACGT	1 cut(s)	597
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	3 cut(s)	116, 155, 583
HspAI	GCGC	3 cut(s)	43, 213, 606
KpnI	GGTACC	1 cut(s)	792
KspAI	GTTAAC	1 cut(s)	727
Kzo9I	GATC	3 cut(s)	205, 468, 687
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	2 cut(s)	165, 567
Lsp1109I	GCAGC	4 cut(s)	100, 103, 533, 608
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	597
MaeIII	GTNAC	2 cut(s)	77, 140
MalI	GATC	3 cut(s)	207, 470, 689
MboI	GATC	3 cut(s)	205, 468, 687
MboII	GAAGA	7 cut(s)	283, 284, 296, 311, 463, 619, 637
MflI	RGATCY	1 cut(s)	468
MluCI	AATT	5 cut(s)	326, 425, 653, 709, 763
MlyI	GAGTC	3 cut(s)	264, 288, 473
MmeI	TCCRAC	1 cut(s)	244
MseI	TTAA	2 cut(s)	656, 726
MspI	CCGG	2 cut(s)	389, 559
MspR9I	CCNGG	2 cut(s)	47, 101
MvaI	CCWGG	2 cut(s)	47, 101
MvnI	CGCG	3 cut(s)	43, 215, 332
MwoI	GCNNNNNNNGC	3 cut(s)	15, 157, 543
NdeII	GATC	3 cut(s)	205, 468, 687
NlaIII	CATG	3 cut(s)	116, 155, 583
NlaIV	GGNNCC	5 cut(s)	10, 19, 563, 775, 790
NmuCI	GTSAC	2 cut(s)	77, 140
NspI	RCATGY	1 cut(s)	116
PciSI	GCTCTTC	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	5 cut(s)	102, 483, 513, 534, 735
PinAI	ACCGGT	1 cut(s)	388
PkrI	GCNGC	5 cut(s)	90, 93, 397, 548, 623
PleI	GAGTC	3 cut(s)	263, 287, 473
PpsI	GAGTC	3 cut(s)	263, 287, 473
Psp6I	CCWGG	2 cut(s)	45, 99
PspFI	CCCAGC	1 cut(s)	464
PspGI	CCWGG	2 cut(s)	45, 99
PspN4I	GGNNCC	5 cut(s)	10, 19, 563, 775, 790
PspPI	GGNCC	2 cut(s)	383, 774
PstI	CTGCAG	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	468
RsaI	GTAC	1 cut(s)	790
RsaNI	GTAC	1 cut(s)	789
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	656, 726
SatI	GCNGC	5 cut(s)	89, 92, 396, 547, 622
Sau3AI	GATC	3 cut(s)	205, 468, 687
Sau96I	GGNCC	2 cut(s)	383, 774
SchI	GAGTC	3 cut(s)	264, 288, 473
ScrFI	CCNGG	2 cut(s)	47, 101
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	1 cut(s)	547
SgrAI	CRCCGGYG	1 cut(s)	388
SinI	GGWCC	1 cut(s)	383
SmlI	CTYRAG	2 cut(s)	164, 317
SmoI	CTYRAG	2 cut(s)	164, 317
Sse9I	AATT	5 cut(s)	326, 425, 653, 709, 763
SsiI	CCGC	4 cut(s)	138, 215, 378, 395
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	2 cut(s)	45, 99
TaaI	ACNGT	3 cut(s)	22, 83, 748
TaiI	ACGT	1 cut(s)	600
TaqI	TCGA	9 cut(s)	36, 54, 96, 225, 282, 294, 360, 474, 486
TasI	AATT	5 cut(s)	326, 425, 653, 709, 763
TauI	GCSGC	1 cut(s)	398
Tru1I	TTAA	2 cut(s)	656, 726
Tru9I	TTAA	2 cut(s)	656, 726
TseFI	GTSAC	2 cut(s)	77, 140
TseI	GCWGC	4 cut(s)	88, 91, 546, 621
Tsp45I	GTSAC	2 cut(s)	77, 140
TspDTI	ATGAA	1 cut(s)	774
TspGWI	ACGGA	2 cut(s)	159, 744
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	1 cut(s)	326
XceI	RCATGY	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	600
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.