Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006424

Physical Location & Seq

Genomic Coordinates Reverse (-)

14881047 .. 14882375

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017278

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTTGGTTGTGGTTCCGAGTGGGGCAGTCGTCGTCGCTTTACTTCCTCGATCCTCGGGCACTCTATTACTCTCTGAGAGAGTCTCTGTTTTGCTGAGTCCCTCTATCCCAATCAGTTGCTTTCTCAACACCATGCAATCTAAGATTCGCTTCGCGCCGAATCTCCCTCAAAATGCAAACCCTAAGTTATATTATTACCAAAAAGAAAACCCTAGCTCTCATCCCGCTGCTGTGCTGGAACCTCACCCACCTGAAGCTCCGCGCGTGCCGCGAGTTGACTTACGCAGGCATGCTGGCATCCGCGAAGAACAACAAGGTTTAAAGAAGCTCTCTTGTGGATTGTGCACCTTCGGAGCCAAGGGAATGAAAGCCGTGCTGGAAAATTGCTCGGCGCTGGAAGAGTTATCAATGAAGCGGCTCTGTGGTTTTGGGCCAGAGCAATCACCGGTGTCTTCGTCCCTGGTCGATCTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

159

Amino Acids

17.12

Weight (kDa)

9.1

Isoelectric Point (pI)

63.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462581
rosa_laevigata	RLG00000017278
rosa_multiflora	Rmu_sc0000131.1_g000003 Rmu_sc0001878.1_g000009 Rmu_sc0002535.1_g000043 Rmu_sc0002882.1_g000002 Rmu_sc0003624.1_g000024 Rmu_sc0004368.1_g000020 Rmu_sc0006173.1_g000034 Rmu_sc0007069.1_g000001 Rmu_sc0008769.1_g000019 Rmu_sc0009999.1_g000001 Rmu_sc0011951.1_g000011 Rmu_sc0014067.1_g000007 Rmu_ssc0000278.1_g000011
rosa_roxburghii	Rroxscaffold_1G00029870 Rroxscaffold_1G00036950 Rroxscaffold_3G00245630
rosa_samantha	Rh3BG119300 Rh3DG121400 Rh5BG126400 Rh5BG245600 Rh5CG377300 Rh5CG481900 Rh5DG254300 Rh6DG193900 Rh7BG174200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	155, 262, 264, 271, 303
AciI	CCGC	5 cut(s)	225, 260, 269, 301, 415
AclWI	GGATC	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	273
AgeI	ACCGGT	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	459
AluBI	AGCT	3 cut(s)	216, 257, 328
AluI	AGCT	3 cut(s)	216, 257, 328
Alw21I	GWGCWC	1 cut(s)	347
Alw26I	GTCTC	1 cut(s)	88
Alw44I	GTGCAC	1 cut(s)	343
AlwI	GGATC	1 cut(s)	45
Ama87I	CYCGRG	1 cut(s)	55
AoxI	GGCC	1 cut(s)	431
ApaLI	GTGCAC	1 cut(s)	343
ApeKI	GCWGC	1 cut(s)	227
AsiGI	ACCGGT	1 cut(s)	445
AspLEI	GCGC	3 cut(s)	157, 264, 394
AspS9I	GGNCC	1 cut(s)	431
AsuHPI	GGTGA	2 cut(s)	236, 435
AvaI	CYCGRG	1 cut(s)	55
BaeGI	GKGCMC	2 cut(s)	62, 347
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	347
BbvI	GCAGC	1 cut(s)	214
BceAI	ACGGC	1 cut(s)	356
BciT130I	CCWGG	1 cut(s)	461
BcoDI	GTCTC	1 cut(s)	88
BfaI	CTAG	2 cut(s)	213, 475
BfoI	RGCGCY	1 cut(s)	395
BisI	GCNGC	3 cut(s)	228, 269, 416
BlsI	GCNGC	3 cut(s)	229, 270, 417
Bme1390I	CCNGG	1 cut(s)	461
BmeT110I	CYCGRG	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	3 cut(s)	15, 240, 355
BmrFI	CCNGG	1 cut(s)	461
BmsI	GCATC	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	444
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BsaJI	CCNNGG	3 cut(s)	54, 357, 459
BsaWI	WCCGGW	1 cut(s)	445
Bse118I	RCCGGY	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	461
BseDI	CCNNGG	3 cut(s)	54, 357, 459
BseGI	GGATG	2 cut(s)	220, 297
BseMII	CTCAG	2 cut(s)	66, 86
BseSI	GKGCMC	2 cut(s)	62, 347
BseXI	GCAGC	1 cut(s)	214
Bsh1236I	CGCG	5 cut(s)	155, 262, 264, 271, 303
BshFI	GGCC	1 cut(s)	433
BshTI	ACCGGT	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	347
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	446
BslFI	GGGAC	2 cut(s)	84, 442
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	2 cut(s)	84, 442
BsnI	GGCC	1 cut(s)	433
BsoBI	CYCGRG	1 cut(s)	55
Bsp1286I	GDGCHC	2 cut(s)	62, 347
Bsp143I	GATC	3 cut(s)	50, 466, 471
BspACI	CCGC	5 cut(s)	225, 260, 269, 301, 415
BspANI	GGCC	1 cut(s)	433
BspCNI	CTCAG	2 cut(s)	67, 87
BspFNI	CGCG	5 cut(s)	155, 262, 264, 271, 303
BspLI	GGNNCC	3 cut(s)	15, 240, 355
BspPI	GGATC	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	445
BssAI	RCCGGY	1 cut(s)	445
BssECI	CCNNGG	3 cut(s)	54, 357, 459
BssMI	GATC	3 cut(s)	50, 466, 471
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	461
Bst6I	CTCTTC	1 cut(s)	393
BstC8I	GCNNGC	4 cut(s)	266, 287, 291, 295
BstDEI	CTNAG	4 cut(s)	75, 95, 141, 183
BstF5I	GGATG	2 cut(s)	220, 297
BstFNI	CGCG	5 cut(s)	155, 262, 264, 271, 303
BstH2I	RGCGCY	1 cut(s)	395
BstHHI	GCGC	3 cut(s)	157, 264, 394
BstKTI	GATC	3 cut(s)	53, 469, 474
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	3 cut(s)	50, 466, 471
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstNI	CCWGG	1 cut(s)	461
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	459
BstSLI	GKGCMC	2 cut(s)	62, 347
BstUI	CGCG	5 cut(s)	155, 262, 264, 271, 303
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	433
BtsCI	GGATG	2 cut(s)	220, 297
Cac8I	GCNNGC	4 cut(s)	266, 287, 291, 295
CfoI	GCGC	3 cut(s)	157, 264, 394
Cfr10I	RCCGGY	1 cut(s)	445
Cfr13I	GGNCC	1 cut(s)	431
CspAI	ACCGGT	1 cut(s)	445
CviAII	CATG	2 cut(s)	133, 290
CviJI	RGCY	7 cut(s)	216, 257, 328, 356, 371, 418, 433
CviKI_1	RGCY	7 cut(s)	216, 257, 328, 356, 371, 418, 433
DdeI	CTNAG	4 cut(s)	75, 95, 141, 183
DpnI	GATC	3 cut(s)	52, 468, 473
DpnII	GATC	3 cut(s)	50, 466, 471
DraI	TTTAAA	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	2 cut(s)	136, 293
FaiI	YATR	3 cut(s)	134, 190, 291
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FaqI	GGGAC	2 cut(s)	84, 442
FatI	CATG	2 cut(s)	132, 289
FauI	CCCGC	1 cut(s)	232
Fnu4HI	GCNGC	3 cut(s)	228, 269, 416
FokI	GGATG	2 cut(s)	207, 284
Fsp4HI	GCNGC	3 cut(s)	228, 269, 416
FspBI	CTAG	2 cut(s)	213, 475
GlaI	GCGC	3 cut(s)	156, 263, 393
GluI	GCNGC	3 cut(s)	228, 269, 416
HaeII	RGCGCY	1 cut(s)	395
HaeIII	GGCC	1 cut(s)	433
HapII	CCGG	1 cut(s)	446
HhaI	GCGC	3 cut(s)	157, 264, 394
Hin1II	CATG	2 cut(s)	136, 293
Hin6I	GCGC	3 cut(s)	155, 262, 392
HinP1I	GCGC	3 cut(s)	155, 262, 392
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	4 cut(s)	81, 97, 145, 160
HpaII	CCGG	1 cut(s)	446
HphI	GGTGA	2 cut(s)	236, 435
Hpy166II	GTNNAC	2 cut(s)	277, 345
Hpy188I	TCNGA	4 cut(s)	18, 76, 353, 471
Hpy8I	GTNNAC	2 cut(s)	277, 345
Hpy99I	CGWCG	2 cut(s)	35, 38
HpyAV	CCTTC	1 cut(s)	358
HpyCH4V	TGCA	3 cut(s)	136, 176, 345
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HpyF3I	CTNAG	4 cut(s)	75, 95, 141, 183
Hsp92II	CATG	2 cut(s)	136, 293
HspAI	GCGC	3 cut(s)	155, 262, 392
Kzo9I	GATC	3 cut(s)	50, 466, 471
LmnI	GCTCC	2 cut(s)	262, 353
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	306
MaeI	CTAG	2 cut(s)	213, 475
MalI	GATC	3 cut(s)	52, 468, 473
MboI	GATC	3 cut(s)	50, 466, 471
MboII	GAAGA	3 cut(s)	317, 410, 444
MhlI	GDGCHC	2 cut(s)	62, 347
MluCI	AATT	1 cut(s)	382
MlyI	GAGTC	2 cut(s)	90, 106
MnlI	CCTC	5 cut(s)	57, 64, 112, 177, 252
MseI	TTAA	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	1 cut(s)	446
MspR9I	CCNGG	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	461
MvnI	CGCG	5 cut(s)	155, 262, 264, 271, 303
MwoI	GCNNNNNNNGC	1 cut(s)	268
NdeII	GATC	3 cut(s)	50, 466, 471
NlaIII	CATG	2 cut(s)	136, 293
NlaIV	GGNNCC	3 cut(s)	15, 240, 355
NmeAIII	GCCGAG	1 cut(s)	368
NspI	RCATGY	1 cut(s)	293
PaeI	GCATGC	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	145, 160
PinAI	ACCGGT	1 cut(s)	445
PkrI	GCNGC	3 cut(s)	229, 270, 417
PleI	GAGTC	2 cut(s)	89, 105
PpsI	GAGTC	2 cut(s)	89, 105
Psp6I	CCWGG	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	459
PspN4I	GGNNCC	3 cut(s)	15, 240, 355
PspPI	GGNCC	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	3 cut(s)	228, 269, 416
Sau3AI	GATC	3 cut(s)	50, 466, 471
Sau96I	GGNCC	1 cut(s)	431
SchI	GAGTC	2 cut(s)	90, 106
ScrFI	CCNGG	1 cut(s)	461
SduI	GDGCHC	2 cut(s)	62, 347
SetI	ASST	7 cut(s)	218, 244, 253, 259, 319, 330, 350
SfaNI	GCATC	1 cut(s)	306
SgrAI	CRCCGGYG	1 cut(s)	445
SphI	GCATGC	1 cut(s)	293
Sse9I	AATT	1 cut(s)	382
SsiI	CCGC	5 cut(s)	225, 260, 269, 301, 415
SspMI	CTAG	2 cut(s)	213, 475
StyD4I	CCNGG	1 cut(s)	459
StyI	CCWWGG	1 cut(s)	357
TaqI	TCGA	2 cut(s)	49, 465
TasI	AATT	1 cut(s)	382
TauI	GCSGC	2 cut(s)	271, 418
TfiI	GAWTC	2 cut(s)	145, 160
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	2 cut(s)	380, 425
VneI	GTGCAC	1 cut(s)	343
XceI	RCATGY	1 cut(s)	293
XspI	CTAG	2 cut(s)	213, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.