Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003624.1

Orthogroup ID

OG0006424

Physical Location & Seq

Genomic Coordinates Forward (+)

89147 .. 89777

Gene Structure 631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003624.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ctgccactgtctctccctcaacgcacaggcggatctacaacctgtcatcctttccctcttctctcggttcggcgccttcaccaaacgcacgcacttgaagctctcatctcgctgcggtgccggaatctcaagcacctgaagctccgcgcgtgcctcgagttgactgacgcaggcatgctggcatccgcgaagaactgcaatggtttgaagaagctctcatgtggatcatacaccttcggagccaaaggaatgaacgccgtgttagaaaattgcttggcgctggaagagttatcagtgaagcggctccgtggtatttgggtcggacggtgtcctgacgggtggaagtcaaaccgtgtgggaaatggaggtttgatttcagtggccaagagttgccctaaccttcaggaattggttcttatcgacgtgaacctaaccaaagcgagcttggacaagttggcaacgaattgccccaatctggagaggttggcattgtgcaggagcaataatatgtttattggtggcaataatatcattattgtggggcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

182

Amino Acids

19.72

Weight (kDa)

9.55

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462581
rosa_laevigata	RLG00000017278
rosa_multiflora	Rmu_sc0000131.1_g000003 Rmu_sc0001878.1_g000009 Rmu_sc0002535.1_g000043 Rmu_sc0002882.1_g000002 Rmu_sc0003624.1_g000024 Rmu_sc0004368.1_g000020 Rmu_sc0006173.1_g000034 Rmu_sc0007069.1_g000001 Rmu_sc0008769.1_g000019 Rmu_sc0009999.1_g000001 Rmu_sc0011951.1_g000011 Rmu_sc0014067.1_g000007 Rmu_ssc0000278.1_g000011
rosa_roxburghii	Rroxscaffold_1G00029870 Rroxscaffold_1G00036950 Rroxscaffold_3G00245630
rosa_samantha	Rh3BG119300 Rh3DG121400 Rh5BG126400 Rh5BG245600 Rh5CG377300 Rh5CG481900 Rh5DG254300 Rh6DG193900 Rh7BG174200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	72, 117
AccII	CGCG	3 cut(s)	147, 149, 188
AciI	CCGC	5 cut(s)	30, 115, 145, 186, 301
AclWI	GGATC	2 cut(s)	40, 232
AcoI	YGGCCR	1 cut(s)	381
AcuI	CTGAAG	2 cut(s)	158, 386
AcyI	GRCGYC	1 cut(s)	73
AfiI	CCNNNNNNNGG	1 cut(s)	475
AgsI	TTSAA	2 cut(s)	98, 208
AjiI	CACGTC	1 cut(s)	424
AluBI	AGCT	4 cut(s)	101, 142, 214, 444
AluI	AGCT	4 cut(s)	101, 142, 214, 444
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	2 cut(s)	40, 232
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	1 cut(s)	381
ApeKI	GCWGC	1 cut(s)	112
Asp700I	GAANNNNTTC	1 cut(s)	411
AspLEI	GCGC	3 cut(s)	75, 149, 280
AsuHPI	GGTGA	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	383
BanI	GGYRCC	2 cut(s)	72, 117
BbvI	GCAGC	1 cut(s)	99
BceAI	ACGGC	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	15
BfoI	RGCGCY	2 cut(s)	76, 281
BisI	GCNGC	2 cut(s)	113, 302
BlsI	GCNGC	2 cut(s)	114, 303
BmeT110I	CYCGRG	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	424
BmiI	GGNNCC	4 cut(s)	74, 119, 241, 305
BmsI	GCATC	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	497
BpuEI	CTTGAG	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	307
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse3DI	GCAATG	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	307
BseGI	GGATG	2 cut(s)	46, 182
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMI	GCAATG	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	99
BsgI	GTGCAG	1 cut(s)	514
Bsh1236I	CGCG	3 cut(s)	147, 149, 188
BshFI	GGCC	1 cut(s)	383
BshNI	GGYRCC	2 cut(s)	72, 117
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	1 cut(s)	15
BsnI	GGCC	1 cut(s)	383
BsoBI	CYCGRG	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	32, 224
BspACI	CCGC	5 cut(s)	30, 115, 145, 186, 301
BspANI	GGCC	1 cut(s)	383
BspFNI	CGCG	3 cut(s)	147, 149, 188
BspLI	GGNNCC	4 cut(s)	74, 119, 241, 305
BspPI	GGATC	2 cut(s)	40, 232
BspT107I	GGYRCC	2 cut(s)	72, 117
BsrDI	GCAATG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	2 cut(s)	32, 224
BssNI	GRCGYC	1 cut(s)	73
Bst4CI	ACNGT	3 cut(s)	9, 327, 353
Bst6I	CTCTTC	2 cut(s)	63, 279
BstACI	GRCGYC	1 cut(s)	73
BstC8I	GCNNGC	6 cut(s)	90, 151, 172, 176, 180, 442
BstDSI	CCRYGG	1 cut(s)	307
BstF5I	GGATG	2 cut(s)	46, 182
BstFNI	CGCG	3 cut(s)	147, 149, 188
BstH2I	RGCGCY	2 cut(s)	76, 281
BstHHI	GCGC	3 cut(s)	75, 149, 280
BstKTI	GATC	2 cut(s)	35, 227
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	2 cut(s)	32, 224
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 139
BstNSI	RCATGY	1 cut(s)	178
BstUI	CGCG	3 cut(s)	147, 149, 188
BstV1I	GCAGC	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	383
BtgI	CCRYGG	1 cut(s)	307
BtrI	CACGTC	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	46, 182
BtsIMutI	CAGTG	3 cut(s)	5, 300, 384
Cac8I	GCNNGC	6 cut(s)	90, 151, 172, 176, 180, 442
CfoI	GCGC	3 cut(s)	75, 149, 280
CseI	GACGC	1 cut(s)	176
CspCI	CAANNNNNGTGG	2 cut(s)	336, 371
CviAII	CATG	2 cut(s)	175, 219
CviJI	RGCY	7 cut(s)	101, 142, 214, 242, 304, 383, 444
CviKI_1	RGCY	7 cut(s)	101, 142, 214, 242, 304, 383, 444
DinI	GGCGCC	1 cut(s)	74
DpnI	GATC	2 cut(s)	34, 226
DpnII	GATC	2 cut(s)	32, 224
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	2 cut(s)	63, 279
EarI	CTCTTC	2 cut(s)	63, 279
EciI	GGCGGA	1 cut(s)	45
Eco57I	CTGAAG	2 cut(s)	158, 386
Eco88I	CYCGRG	1 cut(s)	155
EgeI	GGCGCC	1 cut(s)	74
EheI	GGCGCC	1 cut(s)	74
FaeI	CATG	2 cut(s)	178, 222
FaiI	YATR	4 cut(s)	176, 220, 229, 509
FatI	CATG	2 cut(s)	174, 218
Fnu4HI	GCNGC	2 cut(s)	113, 302
FokI	GGATG	2 cut(s)	33, 169
Fsp4HI	GCNGC	2 cut(s)	113, 302
GlaI	GCGC	3 cut(s)	74, 148, 279
GluI	GCNGC	2 cut(s)	113, 302
GsuI	CTGGAG	1 cut(s)	497
HaeII	RGCGCY	2 cut(s)	76, 281
HaeIII	GGCC	1 cut(s)	383
HapII	CCGG	1 cut(s)	121
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	3 cut(s)	75, 149, 280
Hin1I	GRCGYC	1 cut(s)	73
Hin1II	CATG	2 cut(s)	178, 222
Hin6I	GCGC	3 cut(s)	73, 147, 278
HinP1I	GCGC	3 cut(s)	73, 147, 278
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HinfI	GANTC	1 cut(s)	124
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	2 cut(s)	162, 427
Hpy188I	TCNGA	2 cut(s)	239, 323
Hpy188III	TCNNGA	3 cut(s)	332, 404, 476
Hpy8I	GTNNAC	2 cut(s)	162, 427
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	3 cut(s)	86, 244, 410
HpyCH4III	ACNGT	3 cut(s)	9, 327, 353
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	2 cut(s)	198, 495
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 139
HpySE526I	ACGT	1 cut(s)	423
Hsp92I	GRCGYC	1 cut(s)	73
Hsp92II	CATG	2 cut(s)	178, 222
HspAI	GCGC	3 cut(s)	73, 147, 278
KasI	GGCGCC	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	32, 224
LmnI	GCTCC	4 cut(s)	147, 239, 309, 498
Lsp1109I	GCAGC	1 cut(s)	99
LweI	GCATC	1 cut(s)	191
MaeII	ACGT	1 cut(s)	423
MalI	GATC	2 cut(s)	34, 226
MboI	GATC	2 cut(s)	32, 224
MboII	GAAGA	4 cut(s)	50, 202, 220, 296
MflI	RGATCY	1 cut(s)	32
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	3 cut(s)	268, 407, 463
MluNI	TGGCCA	1 cut(s)	383
Mly113I	GGCGCC	1 cut(s)	73
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	5 cut(s)	27, 66, 164, 359, 474
Mox20I	TGGCCA	1 cut(s)	383
MroXI	GAANNNNTTC	1 cut(s)	411
MscI	TGGCCA	1 cut(s)	383
MslI	CAYNNNNRTG	1 cut(s)	536
Msp20I	TGGCCA	1 cut(s)	383
MspI	CCGG	1 cut(s)	121
MvnI	CGCG	3 cut(s)	147, 149, 188
MwoI	GCNNNNNNNGC	2 cut(s)	98, 139
NarI	GGCGCC	1 cut(s)	73
NdeII	GATC	2 cut(s)	32, 224
NlaIII	CATG	2 cut(s)	178, 222
NlaIV	GGNNCC	4 cut(s)	74, 119, 241, 305
NspI	RCATGY	1 cut(s)	178
PaeI	GCATGC	1 cut(s)	178
PaeR7I	CTCGAG	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	124
PflFI	GACNNNGTC	1 cut(s)	327
PkrI	GCNGC	2 cut(s)	114, 303
PluTI	GGCGCC	1 cut(s)	76
PspN4I	GGNNCC	4 cut(s)	74, 119, 241, 305
PspXI	VCTCGAGB	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	32
PsyI	GACNNNGTC	1 cut(s)	327
RseI	CAYNNNNRTG	1 cut(s)	536
SatI	GCNGC	2 cut(s)	113, 302
Sau3AI	GATC	2 cut(s)	32, 224
SfaNI	GCATC	1 cut(s)	191
SfoI	GGCGCC	1 cut(s)	74
Sfr274I	CTCGAG	1 cut(s)	155
SlaI	CTCGAG	1 cut(s)	155
SmiMI	CAYNNNNRTG	1 cut(s)	536
SmlI	CTYRAG	2 cut(s)	128, 155
SmoI	CTYRAG	2 cut(s)	128, 155
SphI	GCATGC	1 cut(s)	178
Sse9I	AATT	3 cut(s)	268, 407, 463
SsiI	CCGC	5 cut(s)	30, 115, 145, 186, 301
SspDI	GGCGCC	1 cut(s)	72
TaaI	ACNGT	3 cut(s)	9, 327, 353
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	2 cut(s)	156, 420
TasI	AATT	3 cut(s)	268, 407, 463
TauI	GCSGC	1 cut(s)	304
TfiI	GAWTC	1 cut(s)	124
TscAI	CASTG	3 cut(s)	12, 300, 384
TseI	GCWGC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	266
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	3 cut(s)	12, 300, 384
Tth111I	GACNNNGTC	1 cut(s)	327
XceI	RCATGY	1 cut(s)	178
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XhoI	CTCGAG	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.