Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008769.1

Orthogroup ID

OG0006424

Physical Location & Seq

Genomic Coordinates Reverse (-)

79270 .. 80187

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008769.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atggcggcgttcgctcagaattctattggattgaagaagctctccgtcgggttgtgcttgttcggcgccaaggccatgaacgccgtgcttgagtactgcacggtgctcgaggagctatcggtgaagcggctccgggggatccacgacgcgtcggagcagatcggagccggcaaaacgtcgtcgacgctgaaatcgatctgcctgaaggagatactgaatggccagtgctttggaccgctgattgtaagctcgaaaaaccttaagactttgaaattgtttagatgtttgggagattgggatagggttttggaaatgcttggaaatgggaacaggggattgactgaaattcatcttgagaggattcaagtgactgatttggggctttcagcgattgccaaatgctcgaatttggaggtcttgcacattgttaaggccaaatggggaccggtcgctggattccggtcaccggtggtcggattccggtcgccggcgccctgccactggtcaccggaggccggcaaggtggaggatgacttttccctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

181

Amino Acids

19.61

Weight (kDa)

8.87

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462581
rosa_laevigata	RLG00000017278
rosa_multiflora	Rmu_sc0000131.1_g000003 Rmu_sc0001878.1_g000009 Rmu_sc0002535.1_g000043 Rmu_sc0002882.1_g000002 Rmu_sc0003624.1_g000024 Rmu_sc0004368.1_g000020 Rmu_sc0006173.1_g000034 Rmu_sc0007069.1_g000001 Rmu_sc0008769.1_g000019 Rmu_sc0009999.1_g000001 Rmu_sc0011951.1_g000011 Rmu_sc0014067.1_g000007 Rmu_ssc0000278.1_g000011
rosa_roxburghii	Rroxscaffold_1G00029870 Rroxscaffold_1G00036950 Rroxscaffold_3G00245630
rosa_samantha	Rh3BG119300 Rh3DG121400 Rh5BG126400 Rh5BG245600 Rh5CG377300 Rh5CG481900 Rh5DG254300 Rh6DG193900 Rh7BG174200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	65, 490
AccI	GTMKAC	1 cut(s)	182
AccII	CGCG	1 cut(s)	149
AciI	CCGC	3 cut(s)	5, 127, 236
AclWI	GGATC	2 cut(s)	133, 146
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	3 cut(s)	19, 345, 406
AcuI	CTGAAG	1 cut(s)	224
AcyI	GRCGYC	2 cut(s)	66, 491
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	6 cut(s)	452, 466, 473, 487, 501, 515
AflII	CTTAAG	1 cut(s)	260
AflIII	ACRYGT	1 cut(s)	147
AgeI	ACCGGT	2 cut(s)	445, 466
AgsI	TTSAA	3 cut(s)	34, 271, 365
AluBI	AGCT	3 cut(s)	40, 115, 249
AluI	AGCT	3 cut(s)	40, 115, 249
Alw21I	GWGCWC	1 cut(s)	108
AlwI	GGATC	2 cut(s)	133, 146
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	4 cut(s)	72, 220, 432, 513
ApoI	RAATTY	3 cut(s)	19, 345, 406
AsiGI	ACCGGT	2 cut(s)	445, 466
AspLEI	GCGC	2 cut(s)	68, 493
AspS9I	GGNCC	2 cut(s)	233, 443
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	3 cut(s)	133, 456, 498
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	2 cut(s)	233, 443
BalI	TGGCCA	1 cut(s)	222
BamHI	GGATCC	1 cut(s)	138
BanI	GGYRCC	2 cut(s)	65, 490
Bbv12I	GWGCWC	1 cut(s)	108
BceAI	ACGGC	1 cut(s)	68
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BcnI	CCSGG	1 cut(s)	134
BfoI	RGCGCY	2 cut(s)	69, 494
BfrI	CTTAAG	1 cut(s)	260
BisI	GCNGC	2 cut(s)	6, 128
BlsI	GCNGC	2 cut(s)	7, 129
BmcAI	AGTACT	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	2 cut(s)	233, 443
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	233, 443
BmiI	GGNNCC	6 cut(s)	67, 131, 140, 166, 444, 492
BmrFI	CCNGG	1 cut(s)	134
BpuEI	CTTGAG	2 cut(s)	110, 374
BpuMI	CCSGG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	194
BsaHI	GRCGYC	2 cut(s)	66, 491
BsaJI	CCNNGG	2 cut(s)	69, 133
BsaWI	WCCGGW	5 cut(s)	445, 459, 466, 480, 508
Bsc4I	CCNNNNNNNGG	6 cut(s)	452, 466, 473, 487, 501, 515
Bse118I	RCCGGY	5 cut(s)	167, 445, 466, 487, 515
Bse1I	ACTGG	2 cut(s)	223, 506
BseCI	ATCGAT	1 cut(s)	194
BseDI	CCNNGG	2 cut(s)	69, 133
BseGI	GGATG	1 cut(s)	535
BseLI	CCNNNNNNNGG	6 cut(s)	452, 466, 473, 487, 501, 515
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	2 cut(s)	223, 506
BseRI	GAGGAG	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	82
Bsh1236I	CGCG	1 cut(s)	149
Bsh1285I	CGRYCG	2 cut(s)	450, 485
BshFI	GGCC	4 cut(s)	74, 222, 434, 515
BshNI	GGYRCC	2 cut(s)	65, 490
BshTI	ACCGGT	2 cut(s)	445, 466
BshVI	ATCGAT	1 cut(s)	194
BsiEI	CGRYCG	2 cut(s)	450, 485
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	9 cut(s)	133, 168, 446, 460, 467, 481, 488, 509, 516
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	6 cut(s)	452, 466, 473, 487, 501, 515
BsmFI	GGGAC	1 cut(s)	456
BsnI	GGCC	4 cut(s)	74, 222, 434, 515
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	138, 159, 195
BspACI	CCGC	3 cut(s)	5, 127, 236
BspANI	GGCC	4 cut(s)	74, 222, 434, 515
BspCNI	CTCAG	1 cut(s)	28
BspDI	ATCGAT	1 cut(s)	194
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	6 cut(s)	67, 131, 140, 166, 444, 492
BspPI	GGATC	2 cut(s)	133, 146
BspT107I	GGYRCC	2 cut(s)	65, 490
BspTI	CTTAAG	1 cut(s)	260
BsrFI	RCCGGY	5 cut(s)	167, 445, 466, 487, 515
BsrI	ACTGG	2 cut(s)	223, 506
BssAI	RCCGGY	5 cut(s)	167, 445, 466, 487, 515
BssECI	CCNNGG	2 cut(s)	69, 133
BssMI	GATC	3 cut(s)	138, 159, 195
BssNI	GRCGYC	2 cut(s)	66, 491
BssT1I	CCWWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	103
BstACI	GRCGYC	2 cut(s)	66, 491
BstAFI	CTTAAG	1 cut(s)	260
BstC8I	GCNNGC	3 cut(s)	169, 489, 517
BstDEI	CTNAG	1 cut(s)	15
BstEII	GGTNACC	2 cut(s)	462, 504
BstF5I	GGATG	1 cut(s)	535
BstFNI	CGCG	1 cut(s)	149
BstH2I	RGCGCY	2 cut(s)	69, 494
BstHHI	GCGC	2 cut(s)	68, 493
BstKTI	GATC	3 cut(s)	141, 162, 198
BstMBI	GATC	3 cut(s)	138, 159, 195
BstMCI	CGRYCG	2 cut(s)	450, 485
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 63, 80, 112
BstPI	GGTNACC	2 cut(s)	462, 504
BstSCI	CCNGG	1 cut(s)	132
BstUI	CGCG	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	138
BstXI	CCANNNNNNTGG	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	138
Bsu15I	ATCGAT	1 cut(s)	194
BsuRI	GGCC	4 cut(s)	74, 222, 434, 515
BsuTUI	ATCGAT	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	535
BtsIMutI	CAGTG	2 cut(s)	230, 499
Cac8I	GCNNGC	3 cut(s)	169, 489, 517
CfoI	GCGC	2 cut(s)	68, 493
Cfr10I	RCCGGY	5 cut(s)	167, 445, 466, 487, 515
Cfr13I	GGNCC	2 cut(s)	233, 443
ClaI	ATCGAT	1 cut(s)	194
CseI	GACGC	3 cut(s)	138, 155, 193
Csp6I	GTAC	1 cut(s)	94
CspAI	ACCGGT	2 cut(s)	445, 466
CviAII	CATG	1 cut(s)	76
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	15
DinI	GGCGCC	2 cut(s)	67, 492
DpnI	GATC	3 cut(s)	140, 161, 197
DpnII	GATC	3 cut(s)	138, 159, 195
EaeI	YGGCCR	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	69
Eco47I	GGWCC	2 cut(s)	233, 443
Eco57I	CTGAAG	1 cut(s)	224
Eco88I	CYCGRG	1 cut(s)	107
Eco91I	GGTNACC	2 cut(s)	462, 504
EcoO65I	GGTNACC	2 cut(s)	462, 504
EcoRI	GAATTC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	69
EgeI	GGCGCC	2 cut(s)	67, 492
EheI	GGCGCC	2 cut(s)	67, 492
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	1 cut(s)	79
FaiI	YATR	1 cut(s)	77
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	182
Fnu4HI	GCNGC	2 cut(s)	6, 128
FokI	GGATG	1 cut(s)	542
Fsp4HI	GCNGC	2 cut(s)	6, 128
GlaI	GCGC	2 cut(s)	67, 492
GluI	GCNGC	2 cut(s)	6, 128
HaeII	RGCGCY	2 cut(s)	69, 494
HaeIII	GGCC	4 cut(s)	74, 222, 434, 515
HapII	CCGG	9 cut(s)	133, 168, 446, 460, 467, 481, 488, 509, 516
HgaI	GACGC	3 cut(s)	138, 155, 193
HhaI	GCGC	2 cut(s)	68, 493
Hin1I	GRCGYC	2 cut(s)	66, 491
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	2 cut(s)	66, 491
HinP1I	GCGC	2 cut(s)	66, 491
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	3 cut(s)	361, 456, 477
HpaII	CCGG	9 cut(s)	133, 168, 446, 460, 467, 481, 488, 509, 516
HphI	GGTGA	3 cut(s)	133, 456, 498
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	5 cut(s)	18, 154, 164, 476, 545
Hpy188III	TCNNGA	1 cut(s)	353
Hpy8I	GTNNAC	1 cut(s)	183
Hpy99I	CGWCG	6 cut(s)	50, 149, 154, 181, 184, 187
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	2 cut(s)	99, 421
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 63, 80, 112
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	176
Hsp92I	GRCGYC	2 cut(s)	66, 491
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	2 cut(s)	66, 491
KasI	GGCGCC	2 cut(s)	65, 490
KroI	GCCGGC	3 cut(s)	167, 487, 515
KroNI	GCCGGC	3 cut(s)	169, 489, 517
Kzo9I	GATC	3 cut(s)	138, 159, 195
LmnI	GCTCC	4 cut(s)	112, 135, 154, 164
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	3 cut(s)	367, 462, 504
MalI	GATC	3 cut(s)	140, 161, 197
MboI	GATC	3 cut(s)	138, 159, 195
MboII	GAAGA	1 cut(s)	46
MflI	RGATCY	1 cut(s)	138
MhlI	GDGCHC	1 cut(s)	108
MlsI	TGGCCA	1 cut(s)	222
MluCI	AATT	4 cut(s)	19, 272, 345, 406
MluI	ACGCGT	1 cut(s)	147
MluNI	TGGCCA	1 cut(s)	222
Mly113I	GGCGCC	2 cut(s)	66, 491
MmeI	TCCRAC	2 cut(s)	132, 454
MnlI	CCTC	5 cut(s)	103, 351, 406, 505, 520
Mox20I	TGGCCA	1 cut(s)	222
MreI	CGCCGGCG	1 cut(s)	487
MroNI	GCCGGC	3 cut(s)	167, 487, 515
MscI	TGGCCA	1 cut(s)	222
MseI	TTAA	2 cut(s)	261, 429
Msp20I	TGGCCA	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	238
MspCI	CTTAAG	1 cut(s)	260
MspI	CCGG	9 cut(s)	133, 168, 446, 460, 467, 481, 488, 509, 516
MspR9I	CCNGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	4 cut(s)	11, 63, 80, 112
NaeI	GCCGGC	3 cut(s)	169, 489, 517
NarI	GGCGCC	2 cut(s)	66, 491
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	3 cut(s)	138, 159, 195
NgoMIV	GCCGGC	3 cut(s)	167, 487, 515
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	6 cut(s)	67, 131, 140, 166, 444, 492
NmuCI	GTSAC	3 cut(s)	367, 462, 504
PaeR7I	CTCGAG	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PdiI	GCCGGC	3 cut(s)	169, 489, 517
PfeI	GAWTC	3 cut(s)	361, 456, 477
PinAI	ACCGGT	2 cut(s)	445, 466
PkrI	GCNGC	2 cut(s)	7, 129
PluTI	GGCGCC	2 cut(s)	69, 494
PspEI	GGTNACC	2 cut(s)	462, 504
PspN4I	GGNNCC	6 cut(s)	67, 131, 140, 166, 444, 492
PspPI	GGNCC	2 cut(s)	233, 443
PspXI	VCTCGAGB	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	138
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SalI	GTCGAC	1 cut(s)	181
SaqAI	TTAA	2 cut(s)	261, 429
SatI	GCNGC	2 cut(s)	6, 128
Sau3AI	GATC	3 cut(s)	138, 159, 195
Sau96I	GGNCC	2 cut(s)	233, 443
ScaI	AGTACT	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	7 cut(s)	42, 117, 179, 251, 261, 417, 525
SfoI	GGCGCC	2 cut(s)	67, 492
Sfr274I	CTCGAG	1 cut(s)	107
SgrAI	CRCCGGYG	2 cut(s)	466, 487
SgrDI	CGTCGACG	1 cut(s)	181
SinI	GGWCC	2 cut(s)	233, 443
SlaI	CTCGAG	1 cut(s)	107
SmlI	CTYRAG	4 cut(s)	89, 107, 260, 353
SmoI	CTYRAG	4 cut(s)	89, 107, 260, 353
Sse9I	AATT	4 cut(s)	19, 272, 345, 406
SsiI	CCGC	3 cut(s)	5, 127, 236
SspDI	GGCGCC	2 cut(s)	65, 490
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	5 cut(s)	108, 182, 194, 251, 404
TasI	AATT	4 cut(s)	19, 272, 345, 406
TatI	WGTACW	1 cut(s)	93
TauI	GCSGC	2 cut(s)	8, 130
TfiI	GAWTC	3 cut(s)	361, 456, 477
Tru1I	TTAA	2 cut(s)	261, 429
Tru9I	TTAA	2 cut(s)	261, 429
TscAI	CASTG	2 cut(s)	230, 506
TseFI	GTSAC	3 cut(s)	367, 462, 504
Tsp45I	GTSAC	3 cut(s)	367, 462, 504
TspDTI	ATGAA	2 cut(s)	92, 338
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	2 cut(s)	230, 506
Vha464I	CTTAAG	1 cut(s)	260
VpaK11BI	GGWCC	2 cut(s)	233, 443
XapI	RAATTY	3 cut(s)	19, 345, 406
XhoI	CTCGAG	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	182
ZrmI	AGTACT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.