Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009999.1

Orthogroup ID

OG0006424

Physical Location & Seq

Genomic Coordinates Forward (+)

2796 .. 4908

Gene Structure 2113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009999.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atgtcgagcgacgactccttcaacaccttcttctccgagaccggcgccggcaagcacgtcttacacgccatcttcatcgacctcgagcccaccgtcaaagcttctgaacaaacgatctcggccggactagacctgcatctcgtcgccgatctgtacagactacaagccaccggtcgcgccaaccaccggtgtcttcgtccccagatcaaagggggtggaagactgaagttttctgggtgcctagagcaatcgccggtgtcttcatccccagtcgatccgatctggtgcccagagcaatttctggggggcaataaaatcagacgctggaatctggtcaccaatccagtagccggatttgggatttcggtgaccggttgccagattcctgttactcggagagccggataccggattcctgtcaccgggtatccaccaaagaaaaaccacgcaaggtccatcaagcctggcttgggccagtccaccatcgtcattccctccccccgccgtacgtaccaggctggccatgctccatcaacccacgacgtgcatcaccacgacctgcaactccacaatccacgctgccacggccactcaccatccacggcccaaatcgccatgagcaactccgccaaaagccggtgccaccaaggaatacccatccccgatctagatcctcacatcccacaccgccatcaattcaactcatggcgccgtcggccaagaaccatcagcagggatcgatcgccggacctgtaccacacaactaccaccttgcaccaacccagccggaaaaccaacccgataaagccctgtgcgaaacctcccttgacggatccccaagagctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0015630 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04145 ko04210 ko04530 ko04540 ko05130 map04145 map04210 map04530 map04540 map05130

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

282

Amino Acids

31.28

Weight (kDa)

9.99

Isoelectric Point (pI)

60.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462581
rosa_laevigata	RLG00000017278
rosa_multiflora	Rmu_sc0000131.1_g000003 Rmu_sc0001878.1_g000009 Rmu_sc0002535.1_g000043 Rmu_sc0002882.1_g000002 Rmu_sc0003624.1_g000024 Rmu_sc0004368.1_g000020 Rmu_sc0006173.1_g000034 Rmu_sc0007069.1_g000001 Rmu_sc0008769.1_g000019 Rmu_sc0009999.1_g000001 Rmu_sc0011951.1_g000011 Rmu_sc0014067.1_g000007 Rmu_ssc0000278.1_g000011
rosa_roxburghii	Rroxscaffold_1G00029870 Rroxscaffold_1G00036950 Rroxscaffold_3G00245630
rosa_samantha	Rh3BG119300 Rh3DG121400 Rh5BG126400 Rh5BG245600 Rh5CG377300 Rh5CG481900 Rh5DG254300 Rh6DG193900 Rh7BG174200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	141, 567
AccB1I	GGYRCC	5 cut(s)	44, 237, 285, 639, 708
AccII	CGCG	1 cut(s)	177
AciI	CCGC	3 cut(s)	502, 627, 688
AclWI	GGATC	5 cut(s)	269, 665, 744, 827, 840
AcoI	YGGCCR	4 cut(s)	120, 520, 586, 716
AcuI	CTGAAG	1 cut(s)	245
AcyI	GRCGYC	2 cut(s)	45, 709
AdeI	CACNNNGTG	1 cut(s)	544
AfaI	GTAC	4 cut(s)	155, 508, 512, 755
AfiI	CCNNNNNNNGG	8 cut(s)	186, 350, 357, 408, 422, 470, 636, 732
AgeI	ACCGGT	3 cut(s)	170, 186, 371
AgsI	TTSAA	2 cut(s)	22, 700
AjiI	CACGTC	2 cut(s)	58, 544
AjnI	CCWGG	2 cut(s)	463, 513
AluBI	AGCT	2 cut(s)	101, 844
AluI	AGCT	2 cut(s)	101, 844
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	5 cut(s)	269, 665, 744, 827, 840
AlwNI	CAGNNNCTG	1 cut(s)	324
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	6 cut(s)	120, 472, 520, 586, 603, 716
ApeKI	GCWGC	1 cut(s)	579
AsiGI	ACCGGT	3 cut(s)	170, 186, 371
AspLEI	GCGC	3 cut(s)	47, 179, 711
AspS9I	GGNCC	4 cut(s)	453, 472, 604, 748
AsuC2I	CCSGG	1 cut(s)	424
AsuHPI	GGTGA	5 cut(s)	328, 379, 412, 542, 585
AvaI	CYCGRG	1 cut(s)	83
AvaII	GGWCC	2 cut(s)	453, 748
BaeGI	GKGCMC	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	522
BamHI	GGATCC	1 cut(s)	832
BanI	GGYRCC	5 cut(s)	44, 237, 285, 639, 708
BanII	GRGCYC	1 cut(s)	90
BbsI	GAAGAC	3 cut(s)	185, 226, 252
BbvI	GCAGC	1 cut(s)	566
BccI	CCATC	8 cut(s)	77, 464, 491, 538, 604, 665, 699, 734
BceAI	ACGGC	4 cut(s)	489, 601, 618, 696
BciT130I	CCWGG	2 cut(s)	465, 515
BciVI	GTATCC	2 cut(s)	398, 438
BcnI	CCSGG	1 cut(s)	424
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	3 cut(s)	128, 242, 668
BfmI	CTRYAG	1 cut(s)	845
BfoI	RGCGCY	2 cut(s)	48, 712
BfuAI	ACCTGC	2 cut(s)	141, 567
BfuI	GTATCC	2 cut(s)	398, 438
BisI	GCNGC	1 cut(s)	580
BlsI	GCNGC	1 cut(s)	581
Bme1390I	CCNGG	3 cut(s)	424, 465, 515
Bme18I	GGWCC	2 cut(s)	453, 748
BmeT110I	CYCGRG	1 cut(s)	83
BmgBI	CACGTC	2 cut(s)	58, 544
BmgT120I	GGNCC	4 cut(s)	453, 472, 604, 748
BmiI	GGNNCC	6 cut(s)	46, 239, 287, 641, 710, 834
BmrFI	CCNGG	3 cut(s)	424, 465, 515
BmrI	ACTGGG	1 cut(s)	263
BmsI	GCATC	2 cut(s)	145, 556
BmuI	ACTGGG	1 cut(s)	263
BpiI	GAAGAC	3 cut(s)	185, 226, 252
BpuMI	CCSGG	1 cut(s)	424
Bsa29I	ATCGAT	1 cut(s)	739
BsaAI	YACGTR	1 cut(s)	510
BsaBI	GATNNNNATC	1 cut(s)	669
BsaHI	GRCGYC	2 cut(s)	45, 709
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	3 cut(s)	583, 600, 646
BsaWI	WCCGGW	4 cut(s)	170, 186, 371, 408
Bsc4I	CCNNNNNNNGG	8 cut(s)	186, 350, 357, 408, 422, 470, 636, 732
Bse118I	RCCGGY	7 cut(s)	41, 47, 170, 186, 253, 371, 636
Bse1I	ACTGG	3 cut(s)	269, 344, 475
Bse8I	GATNNNNATC	1 cut(s)	669
BseBI	CCWGG	2 cut(s)	465, 515
BseCI	ATCGAT	1 cut(s)	739
BseDI	CCNNGG	3 cut(s)	583, 600, 646
BseGI	GGATG	4 cut(s)	263, 596, 657, 678
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	8 cut(s)	186, 350, 357, 408, 422, 470, 636, 732
BseNI	ACTGG	3 cut(s)	269, 344, 475
BseSI	GKGCMC	1 cut(s)	290
BseX3I	CGGCCG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	566
BseYI	CCCAGC	1 cut(s)	782
Bsh1236I	CGCG	1 cut(s)	177
Bsh1285I	CGRYCG	3 cut(s)	123, 175, 743
BshFI	GGCC	6 cut(s)	122, 474, 522, 588, 605, 718
BshNI	GGYRCC	5 cut(s)	44, 237, 285, 639, 708
BshTI	ACCGGT	3 cut(s)	170, 186, 371
BshVI	ATCGAT	1 cut(s)	739
BsiEI	CGRYCG	3 cut(s)	123, 175, 743
BsiHKCI	CYCGRG	1 cut(s)	83
BsiWI	CGTACG	1 cut(s)	506
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	8 cut(s)	186, 350, 357, 408, 422, 470, 636, 732
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	183
BsnI	GGCC	6 cut(s)	122, 474, 522, 588, 605, 718
Bso31I	GGTCTC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	83
Bsp1286I	GDGCHC	2 cut(s)	90, 290
Bsp1407I	TGTACA	1 cut(s)	153
BspACI	CCGC	3 cut(s)	502, 627, 688
BspANI	GGCC	6 cut(s)	122, 474, 522, 588, 605, 718
BspDI	ATCGAT	1 cut(s)	739
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	6 cut(s)	46, 239, 287, 641, 710, 834
BspMI	ACCTGC	2 cut(s)	141, 567
BspPI	GGATC	5 cut(s)	269, 665, 744, 827, 840
BspT107I	GGYRCC	5 cut(s)	44, 237, 285, 639, 708
BspTNI	GGTCTC	1 cut(s)	32
BsrFI	RCCGGY	7 cut(s)	41, 47, 170, 186, 253, 371, 636
BsrGI	TGTACA	1 cut(s)	153
BsrI	ACTGG	3 cut(s)	269, 344, 475
BssAI	RCCGGY	7 cut(s)	41, 47, 170, 186, 253, 371, 636
BssECI	CCNNGG	3 cut(s)	583, 600, 646
BssNI	GRCGYC	2 cut(s)	45, 709
BssT1I	CCWWGG	1 cut(s)	646
Bst2UI	CCWGG	2 cut(s)	465, 515
Bst4CI	ACNGT	1 cut(s)	94
BstACI	GRCGYC	2 cut(s)	45, 709
BstAUI	TGTACA	1 cut(s)	153
BstBAI	YACGTR	1 cut(s)	510
BstC8I	GCNNGC	3 cut(s)	49, 53, 520
BstDSI	CCRYGG	2 cut(s)	583, 600
BstEII	GGTNACC	2 cut(s)	334, 367
BstF5I	GGATG	4 cut(s)	263, 596, 657, 678
BstFNI	CGCG	1 cut(s)	177
BstH2I	RGCGCY	2 cut(s)	48, 712
BstHHI	GCGC	3 cut(s)	47, 179, 711
BstMAI	GTCTC	1 cut(s)	32
BstMCI	CGRYCG	3 cut(s)	123, 175, 743
BstMWI	GCNNNNNNNGC	4 cut(s)	524, 585, 611, 715
BstNI	CCWGG	2 cut(s)	465, 515
BstPI	GGTNACC	2 cut(s)	334, 367
BstSCI	CCNGG	3 cut(s)	422, 463, 513
BstSFI	CTRYAG	1 cut(s)	845
BstSLI	GKGCMC	1 cut(s)	290
BstSNI	TACGTA	1 cut(s)	510
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	566
BstV2I	GAAGAC	3 cut(s)	185, 226, 252
BstX2I	RGATCY	2 cut(s)	670, 832
BstYI	RGATCY	2 cut(s)	670, 832
BstZI	CGGCCG	1 cut(s)	120
Bsu15I	ATCGAT	1 cut(s)	739
BsuI	GTATCC	2 cut(s)	398, 438
BsuRI	GGCC	6 cut(s)	122, 474, 522, 588, 605, 718
BsuTUI	ATCGAT	1 cut(s)	739
BtgI	CCRYGG	2 cut(s)	583, 600
BtrI	CACGTC	2 cut(s)	58, 544
BtsCI	GGATG	4 cut(s)	263, 596, 657, 678
BveI	ACCTGC	2 cut(s)	141, 567
Cac8I	GCNNGC	3 cut(s)	49, 53, 520
CaiI	CAGNNNCTG	1 cut(s)	324
CfoI	GCGC	3 cut(s)	47, 179, 711
Cfr10I	RCCGGY	7 cut(s)	41, 47, 170, 186, 253, 371, 636
Cfr13I	GGNCC	4 cut(s)	453, 472, 604, 748
ClaI	ATCGAT	1 cut(s)	739
CseI	GACGC	1 cut(s)	330
Csp6I	GTAC	4 cut(s)	154, 507, 511, 754
CspAI	ACCGGT	3 cut(s)	170, 186, 371
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	3 cut(s)	524, 616, 705
CviQI	GTAC	4 cut(s)	154, 507, 511, 754
DinI	GGCGCC	2 cut(s)	46, 710
DraIII	CACNNNGTG	1 cut(s)	544
EaeI	YGGCCR	4 cut(s)	120, 520, 586, 716
EagI	CGGCCG	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	616
EclXI	CGGCCG	1 cut(s)	120
Eco105I	TACGTA	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	646
Eco24I	GRGCYC	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	32
Eco47I	GGWCC	2 cut(s)	453, 748
Eco52I	CGGCCG	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	245
Eco88I	CYCGRG	1 cut(s)	83
Eco91I	GGTNACC	2 cut(s)	334, 367
EcoO65I	GGTNACC	2 cut(s)	334, 367
EcoRII	CCWGG	2 cut(s)	463, 513
EcoT14I	CCWWGG	1 cut(s)	646
EcoT38I	GRGCYC	1 cut(s)	90
EgeI	GGCGCC	2 cut(s)	46, 710
EheI	GGCGCC	2 cut(s)	46, 710
ErhI	CCWWGG	1 cut(s)	646
FaeI	CATG	3 cut(s)	527, 619, 708
FaiI	YATR	3 cut(s)	525, 617, 706
FalI	AAGNNNNNCTT	4 cut(s)	44, 76, 452, 484
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	3 cut(s)	523, 615, 704
FauI	CCCGC	1 cut(s)	509
Fnu4HI	GCNGC	1 cut(s)	580
FokI	GGATG	4 cut(s)	250, 583, 644, 665
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	580
FspBI	CTAG	3 cut(s)	128, 242, 668
GlaI	GCGC	3 cut(s)	46, 178, 710
GluI	GCNGC	1 cut(s)	580
GsaI	CCCAGC	1 cut(s)	786
HaeII	RGCGCY	2 cut(s)	48, 712
HaeIII	GGCC	6 cut(s)	122, 474, 522, 588, 605, 718
HgaI	GACGC	1 cut(s)	330
HhaI	GCGC	3 cut(s)	47, 179, 711
Hin1I	GRCGYC	2 cut(s)	45, 709
Hin1II	CATG	3 cut(s)	527, 619, 708
Hin6I	GCGC	3 cut(s)	45, 177, 709
HinP1I	GCGC	3 cut(s)	45, 177, 709
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	4 cut(s)	14, 328, 382, 412
HphI	GGTGA	5 cut(s)	328, 379, 412, 542, 585
Hpy166II	GTNNAC	1 cut(s)	480
Hpy188I	TCNGA	5 cut(s)	37, 106, 279, 320, 396
Hpy188III	TCNNGA	1 cut(s)	668
Hpy8I	GTNNAC	1 cut(s)	480
Hpy99I	CGWCG	4 cut(s)	14, 146, 545, 717
HpyAV	CCTTC	2 cut(s)	28, 37
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	3 cut(s)	57, 509, 543
HpyCH4V	TGCA	4 cut(s)	136, 547, 562, 775
HpyF10VI	GCNNNNNNNGC	4 cut(s)	524, 585, 611, 715
HpySE526I	ACGT	3 cut(s)	57, 509, 543
Hsp92I	GRCGYC	2 cut(s)	45, 709
Hsp92II	CATG	3 cut(s)	527, 619, 708
HspAI	GCGC	3 cut(s)	45, 177, 709
KasI	GGCGCC	2 cut(s)	44, 708
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	532
Lsp1109I	GCAGC	1 cut(s)	566
LweI	GCATC	2 cut(s)	145, 556
MaeI	CTAG	3 cut(s)	128, 242, 668
MaeII	ACGT	3 cut(s)	57, 509, 543
MaeIII	GTNAC	4 cut(s)	334, 367, 388, 418
MboII	GAAGA	5 cut(s)	22, 64, 185, 231, 252
MflI	RGATCY	2 cut(s)	670, 832
MhlI	GDGCHC	2 cut(s)	90, 290
MlsI	TGGCCA	1 cut(s)	522
MluCI	AATT	2 cut(s)	296, 695
MluNI	TGGCCA	1 cut(s)	522
Mly113I	GGCGCC	2 cut(s)	45, 709
MlyI	GAGTC	1 cut(s)	8
MnlI	CCTC	4 cut(s)	92, 505, 684, 831
Mox20I	TGGCCA	1 cut(s)	522
MroNI	GCCGGC	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	522
Msp20I	TGGCCA	1 cut(s)	522
MspR9I	CCNGG	3 cut(s)	424, 465, 515
MvaI	CCWGG	2 cut(s)	465, 515
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	4 cut(s)	524, 585, 611, 715
NaeI	GCCGGC	1 cut(s)	49
NarI	GGCGCC	2 cut(s)	45, 709
NciI	CCSGG	1 cut(s)	424
NgoMIV	GCCGGC	1 cut(s)	47
NlaIII	CATG	3 cut(s)	527, 619, 708
NlaIV	GGNNCC	6 cut(s)	46, 239, 287, 641, 710, 834
NmeAIII	GCCGAG	1 cut(s)	98
NmuCI	GTSAC	3 cut(s)	334, 367, 418
PaeR7I	CTCGAG	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	49
PfeI	GAWTC	3 cut(s)	328, 382, 412
Pfl23II	CGTACG	1 cut(s)	506
PinAI	ACCGGT	3 cut(s)	170, 186, 371
PkrI	GCNGC	1 cut(s)	581
Ple19I	CGATCG	1 cut(s)	743
PleI	GAGTC	1 cut(s)	8
PluTI	GGCGCC	2 cut(s)	48, 712
PpsI	GAGTC	1 cut(s)	8
Ppu21I	YACGTR	1 cut(s)	510
Psp6I	CCWGG	2 cut(s)	463, 513
PspEI	GGTNACC	2 cut(s)	334, 367
PspFI	CCCAGC	1 cut(s)	782
PspGI	CCWGG	2 cut(s)	463, 513
PspLI	CGTACG	1 cut(s)	506
PspN4I	GGNNCC	6 cut(s)	46, 239, 287, 641, 710, 834
PspPI	GGNCC	4 cut(s)	453, 472, 604, 748
PspXI	VCTCGAGB	1 cut(s)	83
PstNI	CAGNNNCTG	1 cut(s)	324
PsuI	RGATCY	2 cut(s)	670, 832
PvuI	CGATCG	1 cut(s)	743
RsaI	GTAC	4 cut(s)	155, 508, 512, 755
RsaNI	GTAC	4 cut(s)	154, 507, 511, 754
SatI	GCNGC	1 cut(s)	580
Sau96I	GGNCC	4 cut(s)	453, 472, 604, 748
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	3 cut(s)	424, 465, 515
SduI	GDGCHC	2 cut(s)	90, 290
SfaNI	GCATC	2 cut(s)	145, 556
SfcI	CTRYAG	1 cut(s)	845
SfoI	GGCGCC	2 cut(s)	46, 710
Sfr274I	CTCGAG	1 cut(s)	83
SgrAI	CRCCGGYG	2 cut(s)	186, 253
SinI	GGWCC	2 cut(s)	453, 748
SlaI	CTCGAG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
SnaBI	TACGTA	1 cut(s)	510
Sse9I	AATT	2 cut(s)	296, 695
SsiI	CCGC	3 cut(s)	502, 627, 688
SspDI	GGCGCC	2 cut(s)	44, 708
SspMI	CTAG	3 cut(s)	128, 242, 668
StyD4I	CCNGG	3 cut(s)	422, 463, 513
StyI	CCWWGG	1 cut(s)	646
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	3 cut(s)	60, 512, 546
TaqI	TCGA	5 cut(s)	5, 78, 84, 273, 739
TasI	AATT	2 cut(s)	296, 695
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	3 cut(s)	328, 382, 412
TseFI	GTSAC	3 cut(s)	334, 367, 418
TseI	GCWGC	1 cut(s)	579
Tsp45I	GTSAC	3 cut(s)	334, 367, 418
TspDTI	ATGAA	2 cut(s)	64, 252
TspGWI	ACGGA	1 cut(s)	845
VpaK11BI	GGWCC	2 cut(s)	453, 748
XbaI	TCTAGA	1 cut(s)	667
XhoI	CTCGAG	1 cut(s)	83
XspI	CTAG	3 cut(s)	128, 242, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.