Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006424

Physical Location & Seq

Genomic Coordinates Reverse (-)

38856461 .. 38862957

Gene Structure 6497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00029870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTCAAGAATTATTGATGAAGCTGTAGCTGGAACCTCACGCACTGAAGCTTCGCGCGTGCTACGAGTTGACCGACGCGGACATGATGGCGTCCGCGAAGAACTACAAGGTTTGAAGAAGCTCTCCTGTGGATCATGCACATTCGGAGCCAAGGGAATGAACGTCGTGCTGGAAAATTGCTCGGCGCTAGAAGAGTTATCGGTGAAGCGGCTCCGTGGTGGAGCCCACTGGGCTAGGCATTTCGCTTTGTCGCTCAAGACAATTTGCCCGAAAGAGCTTTACAATGGACAGTGTTTCCGGCAGAGTCACATCTATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

106

Amino Acids

11.76

Weight (kDa)

9.36

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462581
rosa_laevigata	RLG00000017278
rosa_multiflora	Rmu_sc0000131.1_g000003 Rmu_sc0001878.1_g000009 Rmu_sc0002535.1_g000043 Rmu_sc0002882.1_g000002 Rmu_sc0003624.1_g000024 Rmu_sc0004368.1_g000020 Rmu_sc0006173.1_g000034 Rmu_sc0007069.1_g000001 Rmu_sc0008769.1_g000019 Rmu_sc0009999.1_g000001 Rmu_sc0011951.1_g000011 Rmu_sc0014067.1_g000007 Rmu_ssc0000278.1_g000011
rosa_roxburghii	Rroxscaffold_1G00029870 Rroxscaffold_1G00036950 Rroxscaffold_3G00245630
rosa_samantha	Rh3BG119300 Rh3DG121400 Rh5BG126400 Rh5BG245600 Rh5CG377300 Rh5CG481900 Rh5DG254300 Rh6DG193900 Rh7BG174200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	55, 57, 78, 96
AciI	CCGC	3 cut(s)	78, 94, 208
AclWI	GGATC	1 cut(s)	139
AcuI	CTGAAG	1 cut(s)	66
AcyI	GRCGYC	1 cut(s)	90
AgsI	TTSAA	1 cut(s)	115
AluBI	AGCT	5 cut(s)	23, 29, 50, 121, 277
AluI	AGCT	5 cut(s)	23, 29, 50, 121, 277
AlwI	GGATC	1 cut(s)	139
AspLEI	GCGC	2 cut(s)	57, 187
AsuHPI	GGTGA	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	226
BccI	CCATC	1 cut(s)	80
BfaI	CTAG	2 cut(s)	188, 234
BfmI	CTRYAG	1 cut(s)	24
BfoI	RGCGCY	1 cut(s)	188
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	1 cut(s)	209
BlsI	GCNGC	1 cut(s)	210
BmiI	GGNNCC	4 cut(s)	34, 148, 212, 223
BmrI	ACTGGG	1 cut(s)	238
BmuI	ACTGGG	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	150, 214
Bse1I	ACTGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	150, 214
BseNI	ACTGG	1 cut(s)	233
Bsh1236I	CGCG	4 cut(s)	55, 57, 78, 96
BsiSI	CCGG	1 cut(s)	298
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	131
BspACI	CCGC	3 cut(s)	78, 94, 208
BspFNI	CGCG	4 cut(s)	55, 57, 78, 96
BspLI	GGNNCC	4 cut(s)	34, 148, 212, 223
BspPI	GGATC	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	150, 214
BssMI	GATC	1 cut(s)	131
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	291
Bst6I	CTCTTC	1 cut(s)	186
BstACI	GRCGYC	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	59
BstDSI	CCRYGG	1 cut(s)	214
BstFNI	CGCG	4 cut(s)	55, 57, 78, 96
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	2 cut(s)	57, 187
BstKTI	GATC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	24
BstUI	CGCG	4 cut(s)	55, 57, 78, 96
BtgI	CCRYGG	1 cut(s)	214
BtsIMutI	CAGTG	3 cut(s)	42, 226, 296
Cac8I	GCNNGC	1 cut(s)	59
CfoI	GCGC	2 cut(s)	57, 187
CseI	GACGC	2 cut(s)	79, 84
CviAII	CATG	2 cut(s)	83, 135
CviJI	RGCY	9 cut(s)	23, 29, 50, 121, 149, 211, 224, 233, 277
CviKI_1	RGCY	9 cut(s)	23, 29, 50, 121, 149, 211, 224, 233, 277
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	2 cut(s)	86, 138
FaiI	YATR	3 cut(s)	84, 136, 315
FatI	CATG	2 cut(s)	82, 134
Fnu4HI	GCNGC	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	1 cut(s)	209
FspBI	CTAG	2 cut(s)	188, 234
GlaI	GCGC	2 cut(s)	56, 186
GluI	GCNGC	1 cut(s)	209
HaeII	RGCGCY	1 cut(s)	188
HapII	CCGG	1 cut(s)	298
HgaI	GACGC	2 cut(s)	79, 84
HhaI	GCGC	2 cut(s)	57, 187
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	86, 138
Hin6I	GCGC	2 cut(s)	55, 185
HinP1I	GCGC	2 cut(s)	55, 185
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HindIII	AAGCTT	1 cut(s)	48
HinfI	GANTC	1 cut(s)	304
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	146
Hpy188III	TCNNGA	2 cut(s)	6, 256
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	2 cut(s)	78, 167
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	86, 138
HspAI	GCGC	2 cut(s)	55, 185
Kzo9I	GATC	1 cut(s)	131
LmnI	GCTCC	3 cut(s)	146, 216, 221
LpnPI	CCDG	5 cut(s)	15, 139, 155, 214, 311
MaeI	CTAG	2 cut(s)	188, 234
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MboII	GAAGA	3 cut(s)	110, 127, 203
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	3 cut(s)	9, 175, 261
MlyI	GAGTC	1 cut(s)	313
MnlI	CCTC	1 cut(s)	46
MslI	CAYNNNNRTG	1 cut(s)	312
MspI	CCGG	1 cut(s)	298
MvnI	CGCG	4 cut(s)	55, 57, 78, 96
MwoI	GCNNNNNNNGC	1 cut(s)	230
NdeII	GATC	1 cut(s)	131
NlaIII	CATG	2 cut(s)	86, 138
NlaIV	GGNNCC	4 cut(s)	34, 148, 212, 223
NmeAIII	GCCGAG	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	210
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
PspN4I	GGNNCC	4 cut(s)	34, 148, 212, 223
RseI	CAYNNNNRTG	1 cut(s)	312
SatI	GCNGC	1 cut(s)	209
Sau3AI	GATC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	313
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	8 cut(s)	25, 31, 38, 52, 112, 123, 165, 279
SfcI	CTRYAG	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	3 cut(s)	9, 175, 261
SsiI	CCGC	3 cut(s)	78, 94, 208
SspMI	CTAG	2 cut(s)	188, 234
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	291
TaiI	ACGT	1 cut(s)	165
TaqII	GACCGA	1 cut(s)	87
TasI	AATT	3 cut(s)	9, 175, 261
TauI	GCSGC	1 cut(s)	211
TscAI	CASTG	3 cut(s)	49, 233, 296
TseFI	GTSAC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	33, 173
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	3 cut(s)	49, 233, 296
XspI	CTAG	2 cut(s)	188, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.