Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006424

Physical Location & Seq

Genomic Coordinates Forward (+)

48879783 .. 48880184

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG377300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAAGAAGCTCTTCGTCGGTTCTTGCATGTTTGGCCCTAAGGCCATGAATGTCGTGCTCGAGCACTGCATGACACTCGTGGATCTATCGGTGAAGTGGCTCAGAGGGATCCACAACGCGTTGGAGCAAATCGAAGCCGGGAAAACACCGTCGACGCTTAAATCGATCTGCCTGAAGGAGAATACTAAACGGTCAGTGCCTTCGATCCAAACCCGTGCTTTGAACGATCCAACTTCTTTAAGTTTGACTGCAATTGCTTCCGATTGCAAAAAATTGGCTCTTTGCAGCAGTGGAACAATTGAAGATATTGAATTCGCTTGTATTGCTGCCAAATGTGTAGCATTGAAGAAGTTGTGTAGAAAAATTGAGTGGAGGTGTGGAAAATTTGAATGGAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

133

Amino Acids

14.73

Weight (kDa)

9.23

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462581
rosa_laevigata	RLG00000017278
rosa_multiflora	Rmu_sc0000131.1_g000003 Rmu_sc0001878.1_g000009 Rmu_sc0002535.1_g000043 Rmu_sc0002882.1_g000002 Rmu_sc0003624.1_g000024 Rmu_sc0004368.1_g000020 Rmu_sc0006173.1_g000034 Rmu_sc0007069.1_g000001 Rmu_sc0008769.1_g000019 Rmu_sc0009999.1_g000001 Rmu_sc0011951.1_g000011 Rmu_sc0014067.1_g000007 Rmu_ssc0000278.1_g000011
rosa_roxburghii	Rroxscaffold_1G00029870 Rroxscaffold_1G00036950 Rroxscaffold_3G00245630
rosa_samantha	Rh3BG119300 Rh3DG121400 Rh5BG126400 Rh5BG245600 Rh5CG377300 Rh5CG481900 Rh5DG254300 Rh6DG193900 Rh7BG174200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	152
AccII	CGCG	1 cut(s)	119
AclWI	GGATC	5 cut(s)	90, 103, 116, 199, 221
AcsI	RAATTY	2 cut(s)	311, 383
AcuI	CTGAAG	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	5 cut(s)	223, 302, 311, 346, 389
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
Alw21I	GWGCWC	2 cut(s)	60, 66
AlwI	GGATC	5 cut(s)	90, 103, 116, 199, 221
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	2 cut(s)	34, 42
ApeKI	GCWGC	2 cut(s)	285, 326
ApoI	RAATTY	2 cut(s)	311, 383
Asp700I	GAANNNNTTC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	59
AxyI	CCTNAGG	1 cut(s)	39
BamHI	GGATCC	1 cut(s)	108
BauI	CACGAG	1 cut(s)	77
Bbv12I	GWGCWC	2 cut(s)	60, 66
BbvI	GCAGC	2 cut(s)	297, 313
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BcnI	CCSGG	1 cut(s)	139
BisI	GCNGC	2 cut(s)	286, 327
BlsI	GCNGC	2 cut(s)	287, 328
Bme1390I	CCNGG	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	139
Bsa29I	ATCGAT	1 cut(s)	164
Bse21I	CCTNAGG	1 cut(s)	39
BseCI	ATCGAT	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	297, 313
Bsh1236I	CGCG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	36, 44
BshVI	ATCGAT	1 cut(s)	164
BsiHKAI	GWGCWC	2 cut(s)	60, 66
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	138
BsnI	GGCC	2 cut(s)	36, 44
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	60, 66
Bsp143I	GATC	5 cut(s)	82, 108, 165, 204, 226
BspANI	GGCC	2 cut(s)	36, 44
BspCNI	CTCAG	1 cut(s)	114
BspDI	ATCGAT	1 cut(s)	164
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	110
BspPI	GGATC	5 cut(s)	90, 103, 116, 199, 221
BspQI	GCTCTTC	1 cut(s)	17
BssMI	GATC	5 cut(s)	82, 108, 165, 204, 226
BssSI	CACGAG	1 cut(s)	77
Bst2BI	CACGAG	1 cut(s)	77
Bst4CI	ACNGT	2 cut(s)	150, 192
Bst6I	CTCTTC	1 cut(s)	17
BstDEI	CTNAG	2 cut(s)	39, 101
BstFNI	CGCG	1 cut(s)	119
BstKTI	GATC	5 cut(s)	85, 111, 168, 207, 229
BstMBI	GATC	5 cut(s)	82, 108, 165, 204, 226
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 323
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	137
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	297, 313
BstX2I	RGATCY	2 cut(s)	82, 108
BstYI	RGATCY	2 cut(s)	82, 108
Bsu15I	ATCGAT	1 cut(s)	164
Bsu36I	CCTNAGG	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	36, 44
BsuTUI	ATCGAT	1 cut(s)	164
BtsI	GCAGTG	2 cut(s)	64, 295
BtsIMutI	CAGTG	3 cut(s)	64, 201, 295
Cfr13I	GGNCC	1 cut(s)	35
ClaI	ATCGAT	1 cut(s)	164
CseI	GACGC	1 cut(s)	163
CviAII	CATG	3 cut(s)	28, 46, 70
CviJI	RGCY	6 cut(s)	10, 36, 44, 100, 137, 278
CviKI_1	RGCY	6 cut(s)	10, 36, 44, 100, 137, 278
DdeI	CTNAG	2 cut(s)	39, 101
DpnI	GATC	5 cut(s)	84, 110, 167, 206, 228
DpnII	GATC	5 cut(s)	82, 108, 165, 204, 226
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	194
Eco81I	CCTNAGG	1 cut(s)	39
Eco88I	CYCGRG	1 cut(s)	59
EcoRI	GAATTC	1 cut(s)	311
FaeI	CATG	3 cut(s)	31, 49, 73
FaiI	YATR	3 cut(s)	29, 47, 71
FalI	AAGNNNNNCTT	1 cut(s)	28
FatI	CATG	3 cut(s)	27, 45, 69
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	2 cut(s)	286, 327
Fsp4HI	GCNGC	2 cut(s)	286, 327
GluI	GCNGC	2 cut(s)	286, 327
HaeIII	GGCC	2 cut(s)	36, 44
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	1 cut(s)	163
Hin1II	CATG	3 cut(s)	31, 49, 73
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	2 cut(s)	104, 262
Hpy8I	GTNNAC	1 cut(s)	153
Hpy99I	CGWCG	3 cut(s)	20, 154, 157
HpyAV	CCTTC	2 cut(s)	169, 210
HpyCH4III	ACNGT	2 cut(s)	150, 192
HpyCH4V	TGCA	5 cut(s)	27, 69, 251, 267, 285
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 323
HpyF3I	CTNAG	2 cut(s)	39, 101
Hsp92II	CATG	3 cut(s)	31, 49, 73
Kzo9I	GATC	5 cut(s)	82, 108, 165, 204, 226
LguI	GCTCTTC	1 cut(s)	17
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	2 cut(s)	151, 185
Lsp1109I	GCAGC	2 cut(s)	297, 313
MalI	GATC	5 cut(s)	84, 110, 167, 206, 228
MboI	GATC	5 cut(s)	82, 108, 165, 204, 226
MboII	GAAGA	4 cut(s)	4, 16, 314, 358
MfeI	CAATTG	2 cut(s)	252, 297
MflI	RGATCY	2 cut(s)	82, 108
MhlI	GDGCHC	2 cut(s)	60, 66
MluCI	AATT	7 cut(s)	252, 272, 297, 311, 363, 383, 397
MluI	ACGCGT	1 cut(s)	117
MmeI	TCCRAC	2 cut(s)	102, 254
MnlI	CCTC	2 cut(s)	98, 366
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	2 cut(s)	159, 239
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	139
MunI	CAATTG	2 cut(s)	252, 297
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	33, 323
NciI	CCSGG	1 cut(s)	139
NdeII	GATC	5 cut(s)	82, 108, 165, 204, 226
NlaIII	CATG	3 cut(s)	31, 49, 73
NlaIV	GGNNCC	1 cut(s)	110
NspI	RCATGY	1 cut(s)	31
PaeR7I	CTCGAG	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PdmI	GAANNNNTTC	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	287, 328
PspN4I	GGNNCC	1 cut(s)	110
PspPI	GGNCC	1 cut(s)	35
PspXI	VCTCGAGB	1 cut(s)	59
PsuI	RGATCY	2 cut(s)	82, 108
SalI	GTCGAC	1 cut(s)	151
SapI	GCTCTTC	1 cut(s)	17
SaqAI	TTAA	2 cut(s)	159, 239
SatI	GCNGC	2 cut(s)	286, 327
Sau3AI	GATC	5 cut(s)	82, 108, 165, 204, 226
Sau96I	GGNCC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	2 cut(s)	60, 66
SetI	ASST	2 cut(s)	12, 377
Sfr274I	CTCGAG	1 cut(s)	59
SgrDI	CGTCGACG	1 cut(s)	151
SlaI	CTCGAG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	7 cut(s)	252, 272, 297, 311, 363, 383, 397
StyD4I	CCNGG	1 cut(s)	137
TaaI	ACNGT	2 cut(s)	150, 192
TaqI	TCGA	5 cut(s)	60, 132, 152, 164, 203
TasI	AATT	7 cut(s)	252, 272, 297, 311, 363, 383, 397
Tru1I	TTAA	2 cut(s)	159, 239
Tru9I	TTAA	2 cut(s)	159, 239
TscAI	CASTG	3 cut(s)	71, 201, 295
TseI	GCWGC	2 cut(s)	285, 326
TspDTI	ATGAA	2 cut(s)	17, 62
TspRI	CASTG	3 cut(s)	71, 201, 295
XapI	RAATTY	2 cut(s)	311, 383
XceI	RCATGY	1 cut(s)	31
XhoI	CTCGAG	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.