Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004368.1

Orthogroup ID

OG0006424

Physical Location & Seq

Genomic Coordinates Reverse (-)

92497 .. 93320

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004368.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgggtctcacgcgcctcaagctccgcggctgccgggaaatcacggacctcggaatggcggcgttcgctcagaattctactggattgaagaagctctccatcgggtcgtgcttgttcggcgccaaggccatgaacgccgtgcttgagtactgcaaggcgctcgaggagctatcggtgaagcggctccgggggatccacgacgagtctgcaatgggtctcgggcctcacccattgaagtcggagaagggagatccgcaaccgtcgaagtcaatgatgggaggagaagaagaaccggattccggtcatcggtcgccggatttcggttaccggtttccggaatccggacatcggtcgccggaatccggtcacctgtcgccggagaccgcgccggccactggtcaccggtgcacagcaaggtggaaggtgacttctctctctaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

147

Amino Acids

15.88

Weight (kDa)

8.96

Isoelectric Point (pI)

56.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462581
rosa_laevigata	RLG00000017278
rosa_multiflora	Rmu_sc0000131.1_g000003 Rmu_sc0001878.1_g000009 Rmu_sc0002535.1_g000043 Rmu_sc0002882.1_g000002 Rmu_sc0003624.1_g000024 Rmu_sc0004368.1_g000020 Rmu_sc0006173.1_g000034 Rmu_sc0007069.1_g000001 Rmu_sc0008769.1_g000019 Rmu_sc0009999.1_g000001 Rmu_sc0011951.1_g000011 Rmu_sc0014067.1_g000007 Rmu_ssc0000278.1_g000011
rosa_roxburghii	Rroxscaffold_1G00029870 Rroxscaffold_1G00036950 Rroxscaffold_3G00245630
rosa_samantha	Rh3BG119300 Rh3DG121400 Rh5BG126400 Rh5BG245600 Rh5CG377300 Rh5CG481900 Rh5DG254300 Rh6DG193900 Rh7BG174200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccII	CGCG	3 cut(s)	13, 27, 386
AccIII	TCCGGA	2 cut(s)	334, 341
AciI	CCGC	6 cut(s)	25, 27, 59, 181, 254, 384
AclWI	GGATC	3 cut(s)	187, 200, 245
AcoI	YGGCCR	1 cut(s)	390
AcsI	RAATTY	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	149
AgeI	ACCGGT	2 cut(s)	327, 402
AgsI	TTSAA	2 cut(s)	88, 235
AluBI	AGCT	3 cut(s)	22, 94, 169
AluI	AGCT	3 cut(s)	22, 94, 169
Alw21I	GWGCWC	1 cut(s)	410
Alw26I	GTCTC	3 cut(s)	11, 221, 374
Alw44I	GTGCAC	1 cut(s)	406
AlwI	GGATC	3 cut(s)	187, 200, 245
Ama87I	CYCGRG	2 cut(s)	161, 218
Aor13HI	TCCGGA	2 cut(s)	334, 341
AoxI	GGCC	3 cut(s)	126, 221, 390
ApaLI	GTGCAC	1 cut(s)	406
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	1 cut(s)	73
AsiGI	ACCGGT	2 cut(s)	327, 402
AspLEI	GCGC	4 cut(s)	15, 122, 160, 388
AspS9I	GGNCC	2 cut(s)	46, 221
AsuC2I	CCSGG	2 cut(s)	35, 188
AsuHPI	GGTGA	5 cut(s)	187, 218, 359, 392, 436
AvaI	CYCGRG	2 cut(s)	161, 218
AvaII	GGWCC	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	410
BamHI	GGATCC	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	410
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	107, 268
BceAI	ACGGC	1 cut(s)	122
BcgI	CGANNNNNNTGC	4 cut(s)	142, 176, 188, 222
BcnI	CCSGG	2 cut(s)	35, 188
BcoDI	GTCTC	3 cut(s)	11, 221, 374
BfoI	RGCGCY	2 cut(s)	123, 161
BisI	GCNGC	4 cut(s)	28, 31, 60, 182
BlsI	GCNGC	4 cut(s)	29, 32, 61, 183
BmcAI	AGTACT	1 cut(s)	149
Bme1390I	CCNGG	2 cut(s)	35, 188
Bme18I	GGWCC	1 cut(s)	46
BmeT110I	CYCGRG	2 cut(s)	161, 218
BmgT120I	GGNCC	2 cut(s)	46, 221
BmiI	GGNNCC	3 cut(s)	121, 185, 194
BmrFI	CCNGG	2 cut(s)	35, 188
BoxI	GACNNNNGTC	1 cut(s)	349
BpuEI	CTTGAG	1 cut(s)	164
BpuMI	CCSGG	2 cut(s)	35, 188
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	3 cut(s)	11, 221, 374
BsaJI	CCNNGG	4 cut(s)	25, 49, 123, 187
BsaWI	WCCGGW	7 cut(s)	292, 299, 327, 334, 341, 362, 402
Bse118I	RCCGGY	3 cut(s)	327, 388, 402
Bse1I	ACTGG	2 cut(s)	85, 400
Bse3DI	GCAATG	1 cut(s)	216
BseAI	TCCGGA	2 cut(s)	334, 341
BseDI	CCNNGG	4 cut(s)	25, 49, 123, 187
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	2 cut(s)	85, 400
BseRI	GAGGAG	2 cut(s)	179, 294
BseSI	GKGCMC	1 cut(s)	410
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	3 cut(s)	13, 27, 386
Bsh1285I	CGRYCG	2 cut(s)	311, 353
BshFI	GGCC	3 cut(s)	128, 223, 392
BshNI	GGYRCC	1 cut(s)	119
BshTI	ACCGGT	2 cut(s)	327, 402
BsiEI	CGRYCG	2 cut(s)	311, 353
BsiHKAI	GWGCWC	1 cut(s)	410
BsiHKCI	CYCGRG	2 cut(s)	161, 218
BsmAI	GTCTC	3 cut(s)	11, 221, 374
BsnI	GGCC	3 cut(s)	128, 223, 392
Bso31I	GGTCTC	3 cut(s)	11, 221, 374
BsoBI	CYCGRG	2 cut(s)	161, 218
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp13I	TCCGGA	2 cut(s)	334, 341
Bsp143I	GATC	2 cut(s)	192, 250
BspACI	CCGC	6 cut(s)	25, 27, 59, 181, 254, 384
BspANI	GGCC	3 cut(s)	128, 223, 392
BspCNI	CTCAG	1 cut(s)	82
BspEI	TCCGGA	2 cut(s)	334, 341
BspFNI	CGCG	3 cut(s)	13, 27, 386
BspLI	GGNNCC	3 cut(s)	121, 185, 194
BspPI	GGATC	3 cut(s)	187, 200, 245
BspT107I	GGYRCC	1 cut(s)	119
BspTNI	GGTCTC	3 cut(s)	11, 221, 374
BsrDI	GCAATG	1 cut(s)	216
BsrFI	RCCGGY	3 cut(s)	327, 388, 402
BsrI	ACTGG	2 cut(s)	85, 400
BssAI	RCCGGY	3 cut(s)	327, 388, 402
BssECI	CCNNGG	4 cut(s)	25, 49, 123, 187
BssMI	GATC	2 cut(s)	192, 250
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	261
BstACI	GRCGYC	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	390
BstDEI	CTNAG	2 cut(s)	69, 438
BstDSI	CCRYGG	1 cut(s)	25
BstEII	GGTNACC	3 cut(s)	323, 365, 398
BstFNI	CGCG	3 cut(s)	13, 27, 386
BstH2I	RGCGCY	2 cut(s)	123, 161
BstHHI	GCGC	4 cut(s)	15, 122, 160, 388
BstKTI	GATC	2 cut(s)	195, 253
BstMAI	GTCTC	3 cut(s)	11, 221, 374
BstMBI	GATC	2 cut(s)	192, 250
BstMCI	CGRYCG	2 cut(s)	311, 353
BstMWI	GCNNNNNNNGC	5 cut(s)	19, 65, 117, 134, 166
BstPAI	GACNNNNGTC	1 cut(s)	349
BstPI	GGTNACC	3 cut(s)	323, 365, 398
BstSCI	CCNGG	2 cut(s)	33, 186
BstSLI	GKGCMC	1 cut(s)	410
BstUI	CGCG	3 cut(s)	13, 27, 386
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	2 cut(s)	192, 250
BstYI	RGATCY	2 cut(s)	192, 250
BsuRI	GGCC	3 cut(s)	128, 223, 392
BtgI	CCRYGG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	1 cut(s)	390
CfoI	GCGC	4 cut(s)	15, 122, 160, 388
Cfr10I	RCCGGY	3 cut(s)	327, 388, 402
Cfr13I	GGNCC	2 cut(s)	46, 221
Cfr42I	CCGCGG	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	148
CspAI	ACCGGT	2 cut(s)	327, 402
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	8 cut(s)	22, 30, 94, 128, 169, 184, 223, 392
CviKI_1	RGCY	8 cut(s)	22, 30, 94, 128, 169, 184, 223, 392
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	69, 438
DinI	GGCGCC	1 cut(s)	121
DpnI	GATC	2 cut(s)	194, 252
DpnII	GATC	2 cut(s)	192, 250
EaeI	YGGCCR	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	123
Eco31I	GGTCTC	3 cut(s)	11, 221, 374
Eco47I	GGWCC	1 cut(s)	46
Eco88I	CYCGRG	2 cut(s)	161, 218
Eco91I	GGTNACC	3 cut(s)	323, 365, 398
EcoO65I	GGTNACC	3 cut(s)	323, 365, 398
EcoRI	GAATTC	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	123
EgeI	GGCGCC	1 cut(s)	121
EheI	GGCGCC	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	1 cut(s)	133
FaiI	YATR	1 cut(s)	131
FatI	CATG	1 cut(s)	129
Fnu4HI	GCNGC	4 cut(s)	28, 31, 60, 182
Fsp4HI	GCNGC	4 cut(s)	28, 31, 60, 182
GlaI	GCGC	4 cut(s)	14, 121, 159, 387
GluI	GCNGC	4 cut(s)	28, 31, 60, 182
HaeII	RGCGCY	2 cut(s)	123, 161
HaeIII	GGCC	3 cut(s)	128, 223, 392
HhaI	GCGC	4 cut(s)	15, 122, 160, 388
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	133
Hin6I	GCGC	4 cut(s)	13, 120, 158, 386
HinP1I	GCGC	4 cut(s)	13, 120, 158, 386
HinfI	GANTC	4 cut(s)	203, 296, 338, 359
HphI	GGTGA	5 cut(s)	187, 218, 359, 392, 436
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	3 cut(s)	53, 72, 241
Hpy188III	TCNNGA	2 cut(s)	335, 342
Hpy8I	GTNNAC	1 cut(s)	408
Hpy99I	CGWCG	2 cut(s)	203, 265
HpyAV	CCTTC	2 cut(s)	238, 415
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4V	TGCA	3 cut(s)	153, 209, 408
HpyF10VI	GCNNNNNNNGC	5 cut(s)	19, 65, 117, 134, 166
HpyF3I	CTNAG	2 cut(s)	69, 438
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	133
HspAI	GCGC	4 cut(s)	13, 120, 158, 386
KasI	GGCGCC	1 cut(s)	119
Kpn2I	TCCGGA	2 cut(s)	334, 341
KroI	GCCGGC	1 cut(s)	388
KroNI	GCCGGC	1 cut(s)	390
KspI	CCGCGG	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	192, 250
LmnI	GCTCC	3 cut(s)	27, 166, 189
Lsp1109I	GCAGC	1 cut(s)	17
MaeIII	GTNAC	4 cut(s)	323, 365, 398, 424
MalI	GATC	2 cut(s)	194, 252
MboI	GATC	2 cut(s)	192, 250
MboII	GAAGA	3 cut(s)	100, 296, 299
MflI	RGATCY	2 cut(s)	192, 250
MhlI	GDGCHC	1 cut(s)	410
MluCI	AATT	1 cut(s)	73
Mly113I	GGCGCC	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	5 cut(s)	26, 59, 157, 234, 272
MroI	TCCGGA	2 cut(s)	334, 341
MroNI	GCCGGC	1 cut(s)	388
MspA1I	CMGCKG	1 cut(s)	27
MspR9I	CCNGG	2 cut(s)	35, 188
MvnI	CGCG	3 cut(s)	13, 27, 386
MwoI	GCNNNNNNNGC	5 cut(s)	19, 65, 117, 134, 166
NaeI	GCCGGC	1 cut(s)	390
NarI	GGCGCC	1 cut(s)	120
NciI	CCSGG	2 cut(s)	35, 188
NdeII	GATC	2 cut(s)	192, 250
NgoMIV	GCCGGC	1 cut(s)	388
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	3 cut(s)	121, 185, 194
NmuCI	GTSAC	3 cut(s)	365, 398, 424
PaeR7I	CTCGAG	1 cut(s)	161
PdiI	GCCGGC	1 cut(s)	390
PfeI	GAWTC	3 cut(s)	296, 338, 359
PinAI	ACCGGT	2 cut(s)	327, 402
PkrI	GCNGC	4 cut(s)	29, 32, 61, 183
PleI	GAGTC	1 cut(s)	211
PluTI	GGCGCC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	211
PshAI	GACNNNNGTC	1 cut(s)	349
PspEI	GGTNACC	3 cut(s)	323, 365, 398
PspN4I	GGNNCC	3 cut(s)	121, 185, 194
PspPI	GGNCC	2 cut(s)	46, 221
PspXI	VCTCGAGB	1 cut(s)	161
PsuI	RGATCY	2 cut(s)	192, 250
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SacII	CCGCGG	1 cut(s)	28
SatI	GCNGC	4 cut(s)	28, 31, 60, 182
Sau3AI	GATC	2 cut(s)	192, 250
Sau96I	GGNCC	2 cut(s)	46, 221
ScaI	AGTACT	1 cut(s)	149
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	35, 188
SduI	GDGCHC	1 cut(s)	410
SetI	ASST	7 cut(s)	24, 51, 96, 171, 372, 419, 426
SfoI	GGCGCC	1 cut(s)	121
Sfr274I	CTCGAG	1 cut(s)	161
Sfr303I	CCGCGG	1 cut(s)	28
SgrAI	CRCCGGYG	1 cut(s)	402
SgrBI	CCGCGG	1 cut(s)	28
SinI	GGWCC	1 cut(s)	46
SlaI	CTCGAG	1 cut(s)	161
SmlI	CTYRAG	3 cut(s)	17, 143, 161
SmoI	CTYRAG	3 cut(s)	17, 143, 161
Sse9I	AATT	1 cut(s)	73
SsiI	CCGC	6 cut(s)	25, 27, 59, 181, 254, 384
SspDI	GGCGCC	1 cut(s)	119
StyD4I	CCNGG	2 cut(s)	33, 186
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	162, 263
TaqII	GACCGA	2 cut(s)	297, 339
TasI	AATT	1 cut(s)	73
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	3 cut(s)	30, 62, 184
TfiI	GAWTC	3 cut(s)	296, 338, 359
TscAI	CASTG	1 cut(s)	400
TseFI	GTSAC	3 cut(s)	365, 398, 424
TseI	GCWGC	1 cut(s)	30
Tsp45I	GTSAC	3 cut(s)	365, 398, 424
TspDTI	ATGAA	1 cut(s)	146
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	400
VneI	GTGCAC	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	161
ZrmI	AGTACT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.