Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002535.1

Orthogroup ID

OG0006424

Physical Location & Seq

Genomic Coordinates Forward (+)

170659 .. 171505

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002535.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgcccatcgacaagaccgttggcagtggcgatgacgccttaaacaccttctccgagaccggcgccgacaagcaattcccacgcgccatcttcatcgacctcaagcccaccgtcaatcaccgatcaccgatcagaagctcgcaacccgctgcagtgcaggaacctcacccacctgaagcactgtgcttgttgcgagttgaccgacgcaggcatgctggcgtccatgaagaactgcaaggtttgaagaaactctcttgtggatcgtgcaccttcggagccaaggggatgaacgccgtgctggaaaattgctcggctctggaagagtatcgcaataaatttagacgccggaatccggtcactagtcctatagccggatttgggattccggtgaccggttgcaggagtcccgtcacgggtcgcgggagtccctggccggccactggtcaccgaagtccgacaaggtctccgatgacttctctcactaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

162

Amino Acids

17.59

Weight (kDa)

9.82

Isoelectric Point (pI)

78.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462581
rosa_laevigata	RLG00000017278
rosa_multiflora	Rmu_sc0000131.1_g000003 Rmu_sc0001878.1_g000009 Rmu_sc0002535.1_g000043 Rmu_sc0002882.1_g000002 Rmu_sc0003624.1_g000024 Rmu_sc0004368.1_g000020 Rmu_sc0006173.1_g000034 Rmu_sc0007069.1_g000001 Rmu_sc0008769.1_g000019 Rmu_sc0009999.1_g000001 Rmu_sc0011951.1_g000011 Rmu_sc0014067.1_g000007 Rmu_ssc0000278.1_g000011
rosa_roxburghii	Rroxscaffold_1G00029870 Rroxscaffold_1G00036950 Rroxscaffold_3G00245630
rosa_samantha	Rh3BG119300 Rh3DG121400 Rh5BG126400 Rh5BG245600 Rh5CG377300 Rh5CG481900 Rh5DG254300 Rh6DG193900 Rh7BG174200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	62
AccII	CGCG	2 cut(s)	84, 420
AciI	CCGC	2 cut(s)	147, 420
AclWI	GGATC	1 cut(s)	268
AcoI	YGGCCR	2 cut(s)	431, 435
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	195
AcyI	GRCGYC	4 cut(s)	36, 63, 219, 343
AdeI	CACNNNGTG	1 cut(s)	486
AfiI	CCNNNNNNNGG	7 cut(s)	352, 371, 378, 392, 399, 413, 440
AgeI	ACCGGT	1 cut(s)	392
AgsI	TTSAA	1 cut(s)	244
AhlI	ACTAGT	1 cut(s)	359
AjnI	CCWGG	1 cut(s)	428
AluBI	AGCT	1 cut(s)	138
AluI	AGCT	1 cut(s)	138
Alw21I	GWGCWC	1 cut(s)	269
Alw26I	GTCTC	2 cut(s)	50, 468
Alw44I	GTGCAC	1 cut(s)	265
AlwI	GGATC	1 cut(s)	268
AoxI	GGCC	2 cut(s)	431, 435
ApaLI	GTGCAC	1 cut(s)	265
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	335
AsiGI	ACCGGT	1 cut(s)	392
AspLEI	GCGC	2 cut(s)	65, 86
AsuHPI	GGTGA	5 cut(s)	110, 117, 158, 400, 437
BaeGI	GKGCMC	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	269
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	2 cut(s)	14, 95
BceAI	ACGGC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	430
BcoDI	GTCTC	2 cut(s)	50, 468
BcuI	ACTAGT	1 cut(s)	359
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	2 cut(s)	150, 366
BfoI	RGCGCY	1 cut(s)	66
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	430
BmiI	GGNNCC	3 cut(s)	64, 162, 277
BmrFI	CCNGG	1 cut(s)	430
BpuEI	CTTGAG	1 cut(s)	86
BsaHI	GRCGYC	4 cut(s)	36, 63, 219, 343
BsaI	GGTCTC	2 cut(s)	50, 468
BsaJI	CCNNGG	2 cut(s)	279, 428
BsaWI	WCCGGW	3 cut(s)	352, 385, 392
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 448, 478
Bsc4I	CCNNNNNNNGG	7 cut(s)	352, 371, 378, 392, 399, 413, 440
Bse118I	RCCGGY	3 cut(s)	59, 392, 433
Bse1I	ACTGG	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	430
BseDI	CCNNGG	2 cut(s)	279, 428
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	7 cut(s)	352, 371, 378, 392, 399, 413, 440
BseNI	ACTGG	1 cut(s)	445
BseSI	GKGCMC	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	136
BsgI	GTGCAG	1 cut(s)	176
Bsh1236I	CGCG	2 cut(s)	84, 420
BshFI	GGCC	2 cut(s)	433, 437
BshNI	GGYRCC	1 cut(s)	62
BshTI	ACCGGT	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	269
BsiSI	CCGG	7 cut(s)	60, 346, 353, 372, 386, 393, 434
BslFI	GGGAC	2 cut(s)	390, 411
BslI	CCNNNNNNNGG	7 cut(s)	352, 371, 378, 392, 399, 413, 440
BsmAI	GTCTC	2 cut(s)	50, 468
BsmFI	GGGAC	2 cut(s)	390, 411
BsnI	GGCC	2 cut(s)	433, 437
Bso31I	GGTCTC	2 cut(s)	50, 468
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp143I	GATC	3 cut(s)	122, 129, 260
BspACI	CCGC	2 cut(s)	147, 420
BspANI	GGCC	2 cut(s)	433, 437
BspFNI	CGCG	2 cut(s)	84, 420
BspLI	GGNNCC	3 cut(s)	64, 162, 277
BspMAI	CTGCAG	1 cut(s)	154
BspPI	GGATC	1 cut(s)	268
BspT107I	GGYRCC	1 cut(s)	62
BspTNI	GGTCTC	2 cut(s)	50, 468
BsrFI	RCCGGY	3 cut(s)	59, 392, 433
BsrI	ACTGG	1 cut(s)	445
BssAI	RCCGGY	3 cut(s)	59, 392, 433
BssECI	CCNNGG	2 cut(s)	279, 428
BssMI	GATC	3 cut(s)	122, 129, 260
BssNI	GRCGYC	4 cut(s)	36, 63, 219, 343
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	430
Bst4CI	ACNGT	3 cut(s)	19, 112, 183
Bst6I	CTCTTC	1 cut(s)	315
BstACI	GRCGYC	4 cut(s)	36, 63, 219, 343
BstC8I	GCNNGC	5 cut(s)	140, 209, 213, 217, 435
BstDEI	CTNAG	1 cut(s)	483
BstEII	GGTNACC	2 cut(s)	388, 443
BstF5I	GGATG	1 cut(s)	291
BstFNI	CGCG	2 cut(s)	84, 420
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	2 cut(s)	65, 86
BstKTI	GATC	3 cut(s)	125, 132, 263
BstMAI	GTCTC	2 cut(s)	50, 468
BstMBI	GATC	3 cut(s)	122, 129, 260
BstNI	CCWGG	1 cut(s)	430
BstNSI	RCATGY	1 cut(s)	215
BstPI	GGTNACC	2 cut(s)	388, 443
BstSCI	CCNGG	1 cut(s)	428
BstSFI	CTRYAG	2 cut(s)	150, 366
BstSLI	GKGCMC	1 cut(s)	269
BstUI	CGCG	2 cut(s)	84, 420
BstV1I	GCAGC	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	433, 437
BtgZI	GCGATG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	291
BtsI	GCAGTG	2 cut(s)	31, 159
BtsIMutI	CAGTG	4 cut(s)	31, 159, 179, 438
Cac8I	GCNNGC	5 cut(s)	140, 209, 213, 217, 435
CfoI	GCGC	2 cut(s)	65, 86
Cfr10I	RCCGGY	3 cut(s)	59, 392, 433
CseI	GACGC	4 cut(s)	44, 208, 213, 351
CspAI	ACCGGT	1 cut(s)	392
CviAII	CATG	2 cut(s)	212, 224
CviJI	RGCY	7 cut(s)	106, 138, 278, 314, 371, 433, 437
CviKI_1	RGCY	7 cut(s)	106, 138, 278, 314, 371, 433, 437
DdeI	CTNAG	1 cut(s)	483
DinI	GGCGCC	1 cut(s)	64
DpnI	GATC	3 cut(s)	124, 131, 262
DpnII	GATC	3 cut(s)	122, 129, 260
DraIII	CACNNNGTG	1 cut(s)	486
EaeI	YGGCCR	2 cut(s)	431, 435
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	279
Eco31I	GGTCTC	2 cut(s)	50, 468
Eco57I	CTGAAG	1 cut(s)	195
Eco91I	GGTNACC	2 cut(s)	388, 443
EcoO65I	GGTNACC	2 cut(s)	388, 443
EcoRII	CCWGG	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	279
EgeI	GGCGCC	1 cut(s)	64
EheI	GGCGCC	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	2 cut(s)	215, 227
FaiI	YATR	3 cut(s)	213, 225, 368
FaqI	GGGAC	2 cut(s)	390, 411
FatI	CATG	2 cut(s)	211, 223
FauI	CCCGC	2 cut(s)	154, 413
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	298
FseI	GGCCGGCC	1 cut(s)	437
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	2 cut(s)	64, 85
GluI	GCNGC	1 cut(s)	150
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	433, 437
HapII	CCGG	7 cut(s)	60, 346, 353, 372, 386, 393, 434
HgaI	GACGC	4 cut(s)	44, 208, 213, 351
HhaI	GCGC	2 cut(s)	65, 86
Hin1I	GRCGYC	4 cut(s)	36, 63, 219, 343
Hin1II	CATG	2 cut(s)	215, 227
Hin6I	GCGC	2 cut(s)	63, 84
HinP1I	GCGC	2 cut(s)	63, 84
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	4 cut(s)	349, 382, 403, 424
HpaII	CCGG	7 cut(s)	60, 346, 353, 372, 386, 393, 434
HphI	GGTGA	5 cut(s)	110, 117, 158, 400, 437
Hpy166II	GTNNAC	2 cut(s)	199, 267
Hpy188I	TCNGA	5 cut(s)	55, 134, 275, 456, 468
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	2 cut(s)	199, 267
Hpy99I	CGWCG	1 cut(s)	207
HpyAV	CCTTC	2 cut(s)	58, 280
HpyCH4III	ACNGT	3 cut(s)	19, 112, 183
HpyCH4V	TGCA	5 cut(s)	152, 157, 235, 267, 399
HpyF3I	CTNAG	1 cut(s)	483
Hsp92I	GRCGYC	4 cut(s)	36, 63, 219, 343
Hsp92II	CATG	2 cut(s)	215, 227
HspAI	GCGC	2 cut(s)	63, 84
KasI	GGCGCC	1 cut(s)	62
KroI	GCCGGC	1 cut(s)	433
KroNI	GCCGGC	1 cut(s)	435
Kzo9I	GATC	3 cut(s)	122, 129, 260
LmnI	GCTCC	1 cut(s)	275
Lsp1109I	GCAGC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	360
MaeIII	GTNAC	4 cut(s)	355, 388, 409, 443
MalI	GATC	3 cut(s)	124, 131, 262
MboI	GATC	3 cut(s)	122, 129, 260
MboII	GAAGA	4 cut(s)	82, 239, 256, 332
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	3 cut(s)	74, 304, 335
Mly113I	GGCGCC	1 cut(s)	63
MlyI	GAGTC	2 cut(s)	412, 433
MmeI	TCCRAC	1 cut(s)	479
MnlI	CCTC	2 cut(s)	110, 174
MroNI	GCCGGC	1 cut(s)	433
MseI	TTAA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	7 cut(s)	60, 346, 353, 372, 386, 393, 434
MspR9I	CCNGG	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	430
MvnI	CGCG	2 cut(s)	84, 420
NaeI	GCCGGC	1 cut(s)	435
NarI	GGCGCC	1 cut(s)	63
NdeII	GATC	3 cut(s)	122, 129, 260
NgoMIV	GCCGGC	1 cut(s)	433
NlaIII	CATG	2 cut(s)	215, 227
NlaIV	GGNNCC	3 cut(s)	64, 162, 277
NmeAIII	GCCGAG	1 cut(s)	290
NmuCI	GTSAC	4 cut(s)	355, 388, 409, 443
NspI	RCATGY	1 cut(s)	215
PaeI	GCATGC	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PdiI	GCCGGC	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	349, 382
PflFI	GACNNNGTC	1 cut(s)	460
PinAI	ACCGGT	1 cut(s)	392
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	2 cut(s)	411, 432
PluTI	GGCGCC	1 cut(s)	66
PpsI	GAGTC	2 cut(s)	411, 432
Psp6I	CCWGG	1 cut(s)	428
PspEI	GGTNACC	2 cut(s)	388, 443
PspGI	CCWGG	1 cut(s)	428
PspN4I	GGNNCC	3 cut(s)	64, 162, 277
PstI	CTGCAG	1 cut(s)	154
PsyI	GACNNNGTC	1 cut(s)	460
RigI	GGCCGGCC	1 cut(s)	437
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	3 cut(s)	122, 129, 260
SchI	GAGTC	2 cut(s)	412, 433
ScrFI	CCNGG	1 cut(s)	430
SduI	GDGCHC	1 cut(s)	269
SetI	ASST	8 cut(s)	50, 102, 140, 166, 175, 241, 272, 464
SfcI	CTRYAG	2 cut(s)	150, 366
SfoI	GGCGCC	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SpeI	ACTAGT	1 cut(s)	359
SphI	GCATGC	1 cut(s)	215
Sse9I	AATT	3 cut(s)	74, 304, 335
SsiI	CCGC	2 cut(s)	147, 420
SspDI	GGCGCC	1 cut(s)	62
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	428
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	3 cut(s)	19, 112, 183
TaqI	TCGA	2 cut(s)	9, 96
TaqII	GACCGA	1 cut(s)	216
TasI	AATT	3 cut(s)	74, 304, 335
TfiI	GAWTC	2 cut(s)	349, 382
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	4 cut(s)	31, 159, 186, 445
TseFI	GTSAC	4 cut(s)	355, 388, 409, 443
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	4 cut(s)	355, 388, 409, 443
TspDTI	ATGAA	3 cut(s)	82, 240, 302
TspRI	CASTG	4 cut(s)	31, 159, 186, 445
Tth111I	GACNNNGTC	1 cut(s)	460
VneI	GTGCAC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	335
XceI	RCATGY	1 cut(s)	215
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.