Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014067.1

Orthogroup ID

OG0006424

Physical Location & Seq

Genomic Coordinates Reverse (-)

10265 .. 10935

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014067.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atgggtctcacgcgcctcaagctccgcggctgccgggaaatcacggacctcggaatggcggcgttcgctcagaattctactggattgaagaagctctccatcgggtcgtgcttgttcggcgccaaggccatgaacgcgccggatttcggtcatcggtcgccggattttggttaccggtttccgaaatccggtcatcggtcgccggaatccggttaccgttcgccagagtccggtcgcaggagaccgcgccggccactggtcaccggagcacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

91

Amino Acids

9.97

Weight (kDa)

11.15

Isoelectric Point (pI)

66.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462581
rosa_laevigata	RLG00000017278
rosa_multiflora	Rmu_sc0000131.1_g000003 Rmu_sc0001878.1_g000009 Rmu_sc0002535.1_g000043 Rmu_sc0002882.1_g000002 Rmu_sc0003624.1_g000024 Rmu_sc0004368.1_g000020 Rmu_sc0006173.1_g000034 Rmu_sc0007069.1_g000001 Rmu_sc0008769.1_g000019 Rmu_sc0009999.1_g000001 Rmu_sc0011951.1_g000011 Rmu_sc0014067.1_g000007 Rmu_ssc0000278.1_g000011
rosa_roxburghii	Rroxscaffold_1G00029870 Rroxscaffold_1G00036950 Rroxscaffold_3G00245630
rosa_samantha	Rh3BG119300 Rh3DG121400 Rh5BG126400 Rh5BG245600 Rh5CG377300 Rh5CG481900 Rh5DG254300 Rh6DG193900 Rh7BG174200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccII	CGCG	4 cut(s)	13, 27, 137, 247
AciI	CCGC	4 cut(s)	25, 27, 59, 245
AcoI	YGGCCR	1 cut(s)	251
AcsI	RAATTY	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	120
AfiI	CCNNNNNNNGG	9 cut(s)	55, 146, 167, 188, 195, 209, 230, 237, 256
AgeI	ACCGGT	1 cut(s)	174
AgsI	TTSAA	1 cut(s)	88
AluBI	AGCT	2 cut(s)	22, 94
AluI	AGCT	2 cut(s)	22, 94
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	2 cut(s)	11, 235
AoxI	GGCC	2 cut(s)	126, 251
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	1 cut(s)	73
AsiGI	ACCGGT	1 cut(s)	174
AspLEI	GCGC	4 cut(s)	15, 122, 139, 249
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	107
BcnI	CCSGG	1 cut(s)	35
BcoDI	GTCTC	2 cut(s)	11, 235
BfoI	RGCGCY	1 cut(s)	123
BisI	GCNGC	3 cut(s)	28, 31, 60
BlsI	GCNGC	3 cut(s)	29, 32, 61
Bme1390I	CCNGG	1 cut(s)	35
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	35
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	2 cut(s)	11, 235
BsaJI	CCNNGG	3 cut(s)	25, 49, 123
BsaWI	WCCGGW	5 cut(s)	174, 188, 209, 230, 263
Bsc4I	CCNNNNNNNGG	9 cut(s)	55, 146, 167, 188, 195, 209, 230, 237, 256
Bse118I	RCCGGY	2 cut(s)	174, 249
Bse1I	ACTGG	2 cut(s)	85, 261
BseDI	CCNNGG	3 cut(s)	25, 49, 123
BseLI	CCNNNNNNNGG	9 cut(s)	55, 146, 167, 188, 195, 209, 230, 237, 256
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	2 cut(s)	85, 261
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	4 cut(s)	13, 27, 137, 247
Bsh1285I	CGRYCG	3 cut(s)	158, 200, 235
BshFI	GGCC	2 cut(s)	128, 253
BshNI	GGYRCC	1 cut(s)	119
BshTI	ACCGGT	1 cut(s)	174
BsiEI	CGRYCG	3 cut(s)	158, 200, 235
BsiHKAI	GWGCWC	1 cut(s)	271
BslI	CCNNNNNNNGG	9 cut(s)	55, 146, 167, 188, 195, 209, 230, 237, 256
BsmAI	GTCTC	2 cut(s)	11, 235
BsnI	GGCC	2 cut(s)	128, 253
Bso31I	GGTCTC	2 cut(s)	11, 235
Bsp1286I	GDGCHC	1 cut(s)	271
BspACI	CCGC	4 cut(s)	25, 27, 59, 245
BspANI	GGCC	2 cut(s)	128, 253
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	4 cut(s)	13, 27, 137, 247
BspLI	GGNNCC	1 cut(s)	121
BspT107I	GGYRCC	1 cut(s)	119
BspTNI	GGTCTC	2 cut(s)	11, 235
BsrFI	RCCGGY	2 cut(s)	174, 249
BsrI	ACTGG	2 cut(s)	85, 261
BssAI	RCCGGY	2 cut(s)	174, 249
BssECI	CCNNGG	3 cut(s)	25, 49, 123
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	218, 273
BstACI	GRCGYC	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	1 cut(s)	25
BstEII	GGTNACC	3 cut(s)	170, 212, 259
BstFNI	CGCG	4 cut(s)	13, 27, 137, 247
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	4 cut(s)	15, 122, 139, 249
BstMAI	GTCTC	2 cut(s)	11, 235
BstMCI	CGRYCG	3 cut(s)	158, 200, 235
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 65, 117, 134
BstPI	GGTNACC	3 cut(s)	170, 212, 259
BstSCI	CCNGG	1 cut(s)	33
BstUI	CGCG	4 cut(s)	13, 27, 137, 247
BstV1I	GCAGC	1 cut(s)	17
BsuRI	GGCC	2 cut(s)	128, 253
BtgI	CCRYGG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	254
Cac8I	GCNNGC	1 cut(s)	251
CfoI	GCGC	4 cut(s)	15, 122, 139, 249
Cfr10I	RCCGGY	2 cut(s)	174, 249
Cfr13I	GGNCC	1 cut(s)	46
Cfr42I	CCGCGG	1 cut(s)	28
CspAI	ACCGGT	1 cut(s)	174
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	5 cut(s)	22, 30, 94, 128, 253
CviKI_1	RGCY	5 cut(s)	22, 30, 94, 128, 253
DdeI	CTNAG	1 cut(s)	69
DinI	GGCGCC	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	123
Eco31I	GGTCTC	2 cut(s)	11, 235
Eco47I	GGWCC	1 cut(s)	46
Eco91I	GGTNACC	3 cut(s)	170, 212, 259
EcoO65I	GGTNACC	3 cut(s)	170, 212, 259
EcoRI	GAATTC	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	123
EgeI	GGCGCC	1 cut(s)	121
EheI	GGCGCC	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	1 cut(s)	133
FaiI	YATR	1 cut(s)	131
FatI	CATG	1 cut(s)	129
Fnu4HI	GCNGC	3 cut(s)	28, 31, 60
Fsp4HI	GCNGC	3 cut(s)	28, 31, 60
GlaI	GCGC	4 cut(s)	14, 121, 138, 248
GluI	GCNGC	3 cut(s)	28, 31, 60
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	128, 253
HhaI	GCGC	4 cut(s)	15, 122, 139, 249
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	133
Hin6I	GCGC	4 cut(s)	13, 120, 137, 247
HinP1I	GCGC	4 cut(s)	13, 120, 137, 247
HinfI	GANTC	2 cut(s)	206, 227
HphI	GGTGA	1 cut(s)	253
Hpy188I	TCNGA	3 cut(s)	53, 72, 183
HpyCH4III	ACNGT	2 cut(s)	218, 273
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 65, 117, 134
HpyF3I	CTNAG	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	133
HspAI	GCGC	4 cut(s)	13, 120, 137, 247
KasI	GGCGCC	1 cut(s)	119
KroI	GCCGGC	1 cut(s)	249
KroNI	GCCGGC	1 cut(s)	251
KspI	CCGCGG	1 cut(s)	28
LmnI	GCTCC	2 cut(s)	27, 266
Lsp1109I	GCAGC	1 cut(s)	17
MaeIII	GTNAC	3 cut(s)	170, 212, 259
MboII	GAAGA	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	1 cut(s)	73
Mly113I	GGCGCC	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	2 cut(s)	26, 59
MroNI	GCCGGC	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	35
MvnI	CGCG	4 cut(s)	13, 27, 137, 247
MwoI	GCNNNNNNNGC	4 cut(s)	19, 65, 117, 134
NaeI	GCCGGC	1 cut(s)	251
NarI	GGCGCC	1 cut(s)	120
NciI	CCSGG	1 cut(s)	35
NgoMIV	GCCGGC	1 cut(s)	249
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	259
PdiI	GCCGGC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	206
PinAI	ACCGGT	1 cut(s)	174
PkrI	GCNGC	3 cut(s)	29, 32, 61
PleI	GAGTC	1 cut(s)	235
PluTI	GGCGCC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	235
PspEI	GGTNACC	3 cut(s)	170, 212, 259
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	46
SacII	CCGCGG	1 cut(s)	28
SatI	GCNGC	3 cut(s)	28, 31, 60
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	3 cut(s)	24, 51, 96
SfoI	GGCGCC	1 cut(s)	121
Sfr303I	CCGCGG	1 cut(s)	28
SgrBI	CCGCGG	1 cut(s)	28
SinI	GGWCC	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	1 cut(s)	73
SsiI	CCGC	4 cut(s)	25, 27, 59, 245
SspDI	GGCGCC	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	2 cut(s)	218, 273
TaqII	GACCGA	3 cut(s)	137, 144, 186
TasI	AATT	1 cut(s)	73
TauI	GCSGC	2 cut(s)	30, 62
TfiI	GAWTC	1 cut(s)	206
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	30
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	146
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.